View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12773_low_23 (Length: 225)
Name: NF12773_low_23
Description: NF12773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12773_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 1e-98; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 4346824 - 4346631
Alignment:
| Q |
19 |
aaagccttctccactattgctttcttcttttttgtctttgattagaatcatctgtggactctacttgaggagaaatcctcttggaagaacattcattttc |
118 |
Q |
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| T |
4346824 |
aaagccttctccactattgctttcttcttttttgtctttgattagaatcatctgtggactctacttgaggagaaatcctcttggaagagcattcattttc |
4346725 |
T |
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| Q |
119 |
atcaccaccaacaataacattcatatctggtgcattacaatggtctattttttcgtcaattggttcatcatatatgagataaactgctggcttc |
212 |
Q |
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| T |
4346724 |
atcaccaccaacaataacattcatatctggtgcatcacaatggtctattttttcgtcaattggttcatcatatatgagataaactgctgtcttc |
4346631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 26 - 212
Target Start/End: Complemental strand, 4363006 - 4362820
Alignment:
| Q |
26 |
tctccactattgctttcttcttttttgtctttgattagaatcatctgtggactctacttgaggagaaatcctcttggaagaacattcattttcatcacca |
125 |
Q |
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| T |
4363006 |
tctccaccagtgttttcttcttttttgtctttgattagaatcatctgtggactctacttgaggagaaacaatcttggaagagcattcattttcatcacca |
4362907 |
T |
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| Q |
126 |
ccaacaataacattcatatctggtgcattacaatggtctattttttcgtcaattggttcatcatatatgagataaactgctggcttc |
212 |
Q |
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| T |
4362906 |
ccaacaataacattcgtatcttgggaatcacagtggtccatttttccgtcaattggttcatcatatatgagataaactgctgtcttc |
4362820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 39 - 215
Target Start/End: Original strand, 4122501 - 4122674
Alignment:
| Q |
39 |
tttcttcttttttgtctttgattagaatcatctgtggactctacttgaggagaaatcctcttggaagaacattcattttcatcaccaccaacaataacat |
138 |
Q |
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| T |
4122501 |
tttcttcttttttgtctttgtttagtatcatctatgtgctctacttgcagagagaccctcttggcagcgcattcattttcagcaccaccaac---aacat |
4122597 |
T |
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| Q |
139 |
tcatatctggtgcattacaatggtctattttttcgtcaattggttcatcatatatgagataaactgctggcttcatc |
215 |
Q |
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| T |
4122598 |
tcttatttggtgcatggcattgctctattttttcaccgattggttcatcatatatgagataaactgatgtcttcatc |
4122674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 39 - 215
Target Start/End: Original strand, 4319153 - 4319332
Alignment:
| Q |
39 |
tttcttcttttttgtctttgattagaatcatctgtggactctacttgaggagaaatcctcttggaagaacattcattttcatcacc---accaacaataa |
135 |
Q |
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| T |
4319153 |
tttcttcttttctgtttttgttcaaaatcatctgtaggctctacttggcgagagatcctcatggcagcacattcattttcatcaccgatatcaacaagaa |
4319252 |
T |
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| Q |
136 |
cattcatatctggtgcattacaatggtctattttttcgtcaattggttcatcatatatgagataaactgctggcttcatc |
215 |
Q |
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| T |
4319253 |
cattcttatctggtgtatgacattgctccaatatttcgacgactggttcatcatatatgagataaactgctgtcttcatc |
4319332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 176
Target Start/End: Complemental strand, 4337337 - 4337197
Alignment:
| Q |
39 |
tttcttcttttttgtctttgattagaatcatctgtggactctacttgaggagaaatcctcttggaagaacattcattttcatcaccac---caacaataa |
135 |
Q |
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| T |
4337337 |
tttcttcttttctgtttttgttttaaatcatctgcaggctctacttgaagagagatcctcttggcagcacattcatttttatcaccactctcaacgagaa |
4337238 |
T |
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| Q |
136 |
cattcatatctggtgcattacaatggtctattttttcgtca |
176 |
Q |
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| T |
4337237 |
cattctcatctggtgcatgacattgctcaaatttttcgtca |
4337197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 4132608 - 4132648
Alignment:
| Q |
175 |
caattggttcatcatatatgagataaactgctggcttcatc |
215 |
Q |
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| T |
4132608 |
caattggttcatcatatatgagataaactgctgtcttcatc |
4132648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 126
Target Start/End: Original strand, 4132482 - 4132571
Alignment:
| Q |
37 |
gctttcttcttttttgtctttgattagaatcatctgtggactctacttgaggagaaatcctcttggaagaacattcattttcatcaccac |
126 |
Q |
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| T |
4132482 |
gctttcttcttctctgtttttgtttaaaatgacctgcgggctctacttgaagagtgaacctcttggcagcacattcattttcatcaccac |
4132571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 204
Target Start/End: Original strand, 5065369 - 5065468
Alignment:
| Q |
108 |
cattcattttcatcacc---accaacaataacattcatatctggtgcattacaatggtctattttttcgtcaattggttcatcatatatgagataaactg |
204 |
Q |
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| T |
5065369 |
cattcattttcatcaccgctactaacaataacattcttatcttgtgcatgacactcctcccccttttcagcaattggttcatcatatatgagataaactg |
5065468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 5126619 - 5126656
Alignment:
| Q |
175 |
caattggttcatcatatatgagataaactgctggcttc |
212 |
Q |
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| T |
5126619 |
caattggttcatcatatatgagataaacagctgtcttc |
5126656 |
T |
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