View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12773_low_26 (Length: 204)

Name: NF12773_low_26
Description: NF12773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12773_low_26
NF12773_low_26
[»] chr1 (20 HSPs)
chr1 (1-138)||(34945340-34945475)
chr1 (165-204)||(43196102-43196141)
chr1 (166-204)||(2257707-2257745)
chr1 (166-204)||(7203857-7203895)
chr1 (166-204)||(9445128-9445166)
chr1 (166-204)||(18541064-18541102)
chr1 (166-204)||(39815366-39815404)
chr1 (166-204)||(49189221-49189259)
chr1 (167-204)||(1156500-1156537)
chr1 (175-204)||(21441665-21441694)
chr1 (175-204)||(21728247-21728276)
chr1 (175-204)||(24611873-24611902)
chr1 (175-204)||(27810260-27810289)
chr1 (176-204)||(5368054-5368082)
chr1 (176-204)||(33422232-33422260)
chr1 (176-204)||(39010844-39010872)
chr1 (176-204)||(50017436-50017464)
chr1 (176-204)||(50141948-50141976)
chr1 (176-204)||(50226892-50226920)
chr1 (176-204)||(52417561-52417589)
[»] chr8 (18 HSPs)
chr8 (165-204)||(11114682-11114721)
chr8 (166-204)||(29509286-29509324)
chr8 (169-204)||(34970230-34970265)
chr8 (166-204)||(8888272-8888310)
chr8 (166-204)||(42131016-42131054)
chr8 (166-204)||(43587661-43587699)
chr8 (175-204)||(9550420-9550449)
chr8 (175-204)||(12659081-12659110)
chr8 (167-204)||(24116061-24116098)
chr8 (166-203)||(35937526-35937563)
chr8 (176-204)||(6105449-6105477)
chr8 (176-204)||(11879503-11879531)
chr8 (176-204)||(11896919-11896947)
chr8 (176-204)||(35633982-35634010)
chr8 (176-204)||(35967419-35967447)
chr8 (176-204)||(37210062-37210090)
chr8 (176-204)||(40102053-40102081)
chr8 (176-204)||(45101426-45101454)
[»] chr4 (27 HSPs)
chr4 (165-204)||(48722088-48722127)
chr4 (165-204)||(49768882-49768921)
chr4 (166-204)||(29513709-29513747)
chr4 (166-204)||(51224851-51224889)
chr4 (166-204)||(56025276-56025314)
chr4 (169-204)||(49424833-49424868)
chr4 (166-204)||(1562549-1562587)
chr4 (166-204)||(6239400-6239438)
chr4 (166-204)||(36081819-36081857)
chr4 (166-204)||(45286128-45286166)
chr4 (166-204)||(47998614-47998652)
chr4 (175-204)||(12241087-12241116)
chr4 (167-204)||(31048909-31048946)
chr4 (175-204)||(33820349-33820378)
chr4 (175-204)||(39881043-39881072)
chr4 (167-204)||(53763824-53763861)
chr4 (175-204)||(55595978-55596007)
chr4 (176-204)||(2812606-2812634)
chr4 (176-204)||(17363260-17363288)
chr4 (176-204)||(25523211-25523239)
chr4 (176-204)||(31275176-31275204)
chr4 (165-204)||(37514144-37514184)
chr4 (176-204)||(45274295-45274323)
chr4 (176-204)||(46794514-46794542)
chr4 (168-204)||(46844254-46844290)
chr4 (176-204)||(46911928-46911956)
chr4 (176-204)||(53583141-53583169)
[»] chr3 (18 HSPs)
chr3 (165-204)||(30805616-30805655)
chr3 (166-204)||(41877708-41877746)
chr3 (166-204)||(7949811-7949849)
chr3 (166-204)||(11335315-11335353)
chr3 (166-204)||(40478300-40478338)
chr3 (166-204)||(47056539-47056577)
chr3 (175-204)||(32008062-32008091)
chr3 (175-204)||(47988498-47988527)
chr3 (175-204)||(47997785-47997814)
chr3 (175-204)||(48007072-48007101)
chr3 (175-204)||(48649609-48649638)
chr3 (176-204)||(622473-622501)
chr3 (176-204)||(6126484-6126512)
chr3 (176-204)||(8066385-8066413)
chr3 (176-204)||(26279914-26279942)
chr3 (176-204)||(37303087-37303115)
chr3 (176-204)||(43900770-43900798)
chr3 (176-204)||(44334814-44334842)
[»] chr6 (9 HSPs)
chr6 (166-204)||(25924877-25924915)
chr6 (166-204)||(28965853-28965891)
chr6 (175-204)||(14094940-14094969)
chr6 (175-204)||(17835641-17835670)
chr6 (176-204)||(8395372-8395400)
chr6 (176-204)||(9954578-9954606)
chr6 (176-204)||(19789089-19789117)
chr6 (176-204)||(21506366-21506394)
chr6 (176-204)||(29383587-29383615)
[»] chr7 (9 HSPs)
chr7 (168-204)||(1790013-1790049)
chr7 (166-204)||(16645692-16645730)
chr7 (166-204)||(17620053-17620091)
chr7 (166-204)||(19426600-19426638)
chr7 (166-204)||(42060676-42060714)
chr7 (175-204)||(9055296-9055325)
chr7 (176-204)||(5378657-5378685)
chr7 (176-204)||(28824533-28824561)
chr7 (176-204)||(29609877-29609905)
[»] chr2 (11 HSPs)
chr2 (168-204)||(6851672-6851708)
chr2 (165-204)||(5606593-5606632)
chr2 (166-204)||(30413739-30413777)
chr2 (166-204)||(31635823-31635861)
chr2 (175-204)||(14797663-14797692)
chr2 (175-204)||(41868382-41868411)
chr2 (176-204)||(7086137-7086165)
chr2 (176-204)||(7498004-7498032)
chr2 (168-204)||(27540037-27540073)
chr2 (176-204)||(42665825-42665853)
chr2 (176-204)||(43650562-43650590)
[»] scaffold0172 (1 HSPs)
scaffold0172 (166-204)||(16995-17033)
[»] chr5 (8 HSPs)
chr5 (166-204)||(31708390-31708428)
chr5 (175-204)||(6046342-6046371)
chr5 (176-204)||(21023328-21023356)
chr5 (168-204)||(31006081-31006117)
chr5 (176-204)||(34381042-34381070)
chr5 (176-204)||(39595302-39595330)
chr5 (176-204)||(40223798-40223826)
chr5 (168-204)||(41192609-41192645)
[»] scaffold0060 (1 HSPs)
scaffold0060 (176-204)||(6847-6875)


Alignment Details
Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 34945340 - 34945475
Alignment:
Q  1 catgagagagtgtgtgtttaacattaaaaaggagagaagggagtgtacataaggatgaggatacaactaccacaaaatatagtactagattattttcaat 100  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||| ||||||||  ||||||||||||||||||||||    
T  34945340 catgagagagtgtgtgtttaacattaaaaaggagaaaaaggagtgtacataagggtgaggatacaaccaccacaaa--atagtactagattattttcaat 34945437  T
Q  101 ggcgaaggattcactccgatgctttggtataaaagaaa 138  Q
    || ||||||||||||||  || ||||||||||||||||    
T  34945438 ggtgaaggattcactccagtggtttggtataaaagaaa 34945475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 43196141 - 43196102
Alignment:
Q  165 tccattttgcaacaactttttgacaactttctctctcata 204  Q
    |||||||||| ||||||||||||||| |||||||||||||    
T  43196141 tccattttgctacaactttttgacaattttctctctcata 43196102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 2257745 - 2257707
Alignment:
Q  166 ccattttgcaacaactttttgacaactttctctctcata 204  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  2257745 ccattttgctacaactttttaacaactttctctctcata 2257707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 7203895 - 7203857
Alignment:
Q  166 ccattttgcaacaactttttgacaactttctctctcata 204  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  7203895 ccattttgcaacaatttttagacaactttctctctcata 7203857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 9445128 - 9445166
Alignment:
Q  166 ccattttgcaacaactttttgacaactttctctctcata 204  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  9445128 ccattttgtaacaactttttgacaactttctctttcata 9445166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 18541102 - 18541064
Alignment:
Q  166 ccattttgcaacaactttttgacaactttctctctcata 204  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  18541102 ccattttctaacaactttttgacaactttctctctcata 18541064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 39815366 - 39815404
Alignment:
Q  166 ccattttgcaacaactttttgacaactttctctctcata 204  Q
    ||||||||| ||||||||| |||||||||||||||||||    
T  39815366 ccattttgctacaacttttggacaactttctctctcata 39815404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 49189259 - 49189221
Alignment:
Q  166 ccattttgcaacaactttttgacaactttctctctcata 204  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  49189259 ccattttgctacaactttttgacaactttctttctcata 49189221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 1156500 - 1156537
Alignment:
Q  167 cattttgcaacaactttttgacaactttctctctcata 204  Q
    |||||||||| || ||||||||||||||||||||||||    
T  1156500 cattttgcaataattttttgacaactttctctctcata 1156537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 204
Target Start/End: Original strand, 21441665 - 21441694
Alignment:
Q  175 aacaactttttgacaactttctctctcata 204  Q
    ||||||||||||||||||||||||||||||    
T  21441665 aacaactttttgacaactttctctctcata 21441694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 204
Target Start/End: Complemental strand, 21728276 - 21728247
Alignment:
Q  175 aacaactttttgacaactttctctctcata 204  Q
    ||||||||||||||||||||||||||||||    
T  21728276 aacaactttttgacaactttctctctcata 21728247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 204
Target Start/End: Original strand, 24611873 - 24611902
Alignment:
Q  175 aacaactttttgacaactttctctctcata 204  Q
    ||||||||||||||||||||||||||||||    
T  24611873 aacaactttttgacaactttctctctcata 24611902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 204
Target Start/End: Complemental strand, 27810289 - 27810260
Alignment:
Q  175 aacaactttttgacaactttctctctcata 204  Q
    ||||||||||||||||||||||||||||||    
T  27810289 aacaactttttgacaactttctctctcata 27810260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 5368082 - 5368054
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  5368082 acaactttttgacaactttctctctcata 5368054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 33422260 - 33422232
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  33422260 acaactttttgacaactttctctctcata 33422232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 39010844 - 39010872
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  39010844 acaactttttgacaactttctctctcata 39010872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 50017464 - 50017436
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  50017464 acaactttttgacaactttctctctcata 50017436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 50141976 - 50141948
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  50141976 acaactttttgacaactttctctctcata 50141948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 50226920 - 50226892
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  50226920 acaactttttgacaactttctctctcata 50226892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 52417561 - 52417589
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  52417561 acaactttttgacaactttctctctcata 52417589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 11114721 - 11114682
Alignment:
Q  165 tccattttgcaacaactttttgacaactttctctctcata 204  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  11114721 tccattttgcaataactttttgacaactttctctctcata 11114682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 29509286 - 29509324
Alignment:
Q  166 ccattttgcaacaactttttgacaactttctctctcata 204  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  29509286 ccattttgctacaactttttgacaactttctctctcata 29509324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 169 - 204
Target Start/End: Original strand, 34970230 - 34970265
Alignment:
Q  169 ttttgcaacaactttttgacaactttctctctcata 204  Q
    ||||| ||||||||||||||||||||||||||||||    
T  34970230 ttttgtaacaactttttgacaactttctctctcata 34970265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 8888272 - 8888310
Alignment:
Q  166 ccattttgcaacaactttttgacaactttctctctcata 204  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  8888272 ccattttgcaacaactttcagacaactttctctctcata 8888310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 42131016 - 42131054
Alignment:
Q  166 ccattttgcaacaactttttgacaactttctctctcata 204  Q
    ||||| ||||||||||||| |||||||||||||||||||    
T  42131016 ccattctgcaacaacttttggacaactttctctctcata 42131054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 43587661 - 43587699
Alignment:
Q  166 ccattttgcaacaactttttgacaactttctctctcata 204  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  43587661 ccattttgctacaactttttgacaattttctctctcata 43587699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 204
Target Start/End: Complemental strand, 9550449 - 9550420
Alignment:
Q  175 aacaactttttgacaactttctctctcata 204  Q
    ||||||||||||||||||||||||||||||    
T  9550449 aacaactttttgacaactttctctctcata 9550420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 204
Target Start/End: Original strand, 12659081 - 12659110
Alignment:
Q  175 aacaactttttgacaactttctctctcata 204  Q
    ||||||||||||||||||||||||||||||    
T  12659081 aacaactttttgacaactttctctctcata 12659110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 24116061 - 24116098
Alignment:
Q  167 cattttgcaacaactttttgacaactttctctctcata 204  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  24116061 cattttgcaacaattttttgacaactttctttctcata 24116098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 203
Target Start/End: Complemental strand, 35937563 - 35937526
Alignment:
Q  166 ccattttgcaacaactttttgacaactttctctctcat 203  Q
    |||||||| |||||||||| ||||||||||||||||||    
T  35937563 ccattttgtaacaacttttggacaactttctctctcat 35937526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 6105477 - 6105449
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  6105477 acaactttttgacaactttctctctcata 6105449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 11879531 - 11879503
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  11879531 acaactttttgacaactttctctctcata 11879503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 11896947 - 11896919
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  11896947 acaactttttgacaactttctctctcata 11896919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 35634010 - 35633982
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  35634010 acaactttttgacaactttctctctcata 35633982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 35967447 - 35967419
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  35967447 acaactttttgacaactttctctctcata 35967419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 37210090 - 37210062
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  37210090 acaactttttgacaactttctctctcata 37210062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 40102053 - 40102081
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  40102053 acaactttttgacaactttctctctcata 40102081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 45101426 - 45101454
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  45101426 acaactttttgacaactttctctctcata 45101454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 48722088 - 48722127
Alignment:
Q  165 tccattttgcaacaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  48722088 tccattttgcaacaactttttgacaattttctctctcata 48722127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 49768921 - 49768882
Alignment:
Q  165 tccattttgcaacaactttttgacaactttctctctcata 204  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  49768921 tccattttgcaacaattttttgacaactttctctctcata 49768882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 29513747 - 29513709
Alignment:
Q  166 ccattttgcaacaactttttgacaactttctctctcata 204  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  29513747 ccattttgctacaactttttgacaactttctctctcata 29513709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 51224889 - 51224851
Alignment:
Q  166 ccattttgcaacaactttttgacaactttctctctcata 204  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  51224889 ccattttgctacaactttttgacaactttctctctcata 51224851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 56025276 - 56025314
Alignment:
Q  166 ccattttgcaacaactttttgacaactttctctctcata 204  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  56025276 ccattttgctacaactttttgacaactttctctctcata 56025314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 169 - 204
Target Start/End: Complemental strand, 49424868 - 49424833
Alignment:
Q  169 ttttgcaacaactttttgacaactttctctctcata 204  Q
    ||||| ||||||||||||||||||||||||||||||    
T  49424868 ttttgtaacaactttttgacaactttctctctcata 49424833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 1562587 - 1562549
Alignment:
Q  166 ccattttgcaacaactttttgacaactttctctctcata 204  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  1562587 ccattttctaacaactttttgacaactttctctctcata 1562549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 6239400 - 6239438
Alignment:
Q  166 ccattttgcaacaactttttgacaactttctctctcata 204  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  6239400 ccattttgcaataattttttgacaactttctctctcata 6239438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 36081819 - 36081857
Alignment:
Q  166 ccattttgcaacaactttttgacaactttctctctcata 204  Q
    ||||||||| ||||||||| |||||||||||||||||||    
T  36081819 ccattttgctacaacttttggacaactttctctctcata 36081857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 45286166 - 45286128
Alignment:
Q  166 ccattttgcaacaactttttgacaactttctctctcata 204  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  45286166 ccattttgcaacaactttcagacaactttctctctcata 45286128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 47998614 - 47998652
Alignment:
Q  166 ccattttgcaacaactttttgacaactttctctctcata 204  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  47998614 ccattttgtaacaactttttgacaactttttctctcata 47998652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 204
Target Start/End: Original strand, 12241087 - 12241116
Alignment:
Q  175 aacaactttttgacaactttctctctcata 204  Q
    ||||||||||||||||||||||||||||||    
T  12241087 aacaactttttgacaactttctctctcata 12241116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 31048909 - 31048946
Alignment:
Q  167 cattttgcaacaactttttgacaactttctctctcata 204  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  31048909 cattttgctgcaactttttgacaactttctctctcata 31048946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 204
Target Start/End: Complemental strand, 33820378 - 33820349
Alignment:
Q  175 aacaactttttgacaactttctctctcata 204  Q
    ||||||||||||||||||||||||||||||    
T  33820378 aacaactttttgacaactttctctctcata 33820349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 204
Target Start/End: Complemental strand, 39881072 - 39881043
Alignment:
Q  175 aacaactttttgacaactttctctctcata 204  Q
    ||||||||||||||||||||||||||||||    
T  39881072 aacaactttttgacaactttctctctcata 39881043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 204
Target Start/End: Complemental strand, 53763861 - 53763824
Alignment:
Q  167 cattttgcaacaactttttgacaactttctctctcata 204  Q
    |||||||| ||||||||| |||||||||||||||||||    
T  53763861 cattttgctacaacttttggacaactttctctctcata 53763824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 204
Target Start/End: Original strand, 55595978 - 55596007
Alignment:
Q  175 aacaactttttgacaactttctctctcata 204  Q
    ||||||||||||||||||||||||||||||    
T  55595978 aacaactttttgacaactttctctctcata 55596007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 2812634 - 2812606
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  2812634 acaactttttgacaactttctctctcata 2812606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 17363260 - 17363288
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  17363260 acaactttttgacaactttctctctcata 17363288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 25523239 - 25523211
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  25523239 acaactttttgacaactttctctctcata 25523211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 31275176 - 31275204
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  31275176 acaactttttgacaactttctctctcata 31275204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 37514184 - 37514144
Alignment:
Q  165 tccattttgcaacaactttt-tgacaactttctctctcata 204  Q
    ||||||||| |||||||||| ||||||||||||||||||||    
T  37514184 tccattttgtaacaacttttgtgacaactttctctctcata 37514144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 45274295 - 45274323
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  45274295 acaactttttgacaactttctctctcata 45274323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 46794542 - 46794514
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  46794542 acaactttttgacaactttctctctcata 46794514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 46844290 - 46844254
Alignment:
Q  168 attttgcaacaactttttgacaactttctctctcata 204  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  46844290 attttgtaacaattttttgacaactttctctctcata 46844254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 46911928 - 46911956
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  46911928 acaactttttgacaactttctctctcata 46911956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 53583169 - 53583141
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  53583169 acaactttttgacaactttctctctcata 53583141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 30805655 - 30805616
Alignment:
Q  165 tccattttgcaacaactttttgacaactttctctctcata 204  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  30805655 tccattttgcaacaactttttgacaacttcctctctcata 30805616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 41877708 - 41877746
Alignment:
Q  166 ccattttgcaacaactttttgacaactttctctctcata 204  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  41877708 ccattttgctacaactttttgacaactttctctctcata 41877746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 7949811 - 7949849
Alignment:
Q  166 ccattttgcaacaactttttgacaactttctctctcata 204  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  7949811 ccattttgctacaactttttgacaactttctttctcata 7949849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 11335353 - 11335315
Alignment:
Q  166 ccattttgcaacaactttttgacaactttctctctcata 204  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  11335353 ccattttctaacaactttttgacaactttctctctcata 11335315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 40478338 - 40478300
Alignment:
Q  166 ccattttgcaacaactttttgacaactttctctctcata 204  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  40478338 ccattttgctacaactttttgacaactttctatctcata 40478300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 47056577 - 47056539
Alignment:
Q  166 ccattttgcaacaactttttgacaactttctctctcata 204  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  47056577 ccattttgcaacaatttttggacaactttctctctcata 47056539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 204
Target Start/End: Original strand, 32008062 - 32008091
Alignment:
Q  175 aacaactttttgacaactttctctctcata 204  Q
    ||||||||||||||||||||||||||||||    
T  32008062 aacaactttttgacaactttctctctcata 32008091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 204
Target Start/End: Complemental strand, 47988527 - 47988498
Alignment:
Q  175 aacaactttttgacaactttctctctcata 204  Q
    ||||||||||||||||||||||||||||||    
T  47988527 aacaactttttgacaactttctctctcata 47988498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 204
Target Start/End: Complemental strand, 47997814 - 47997785
Alignment:
Q  175 aacaactttttgacaactttctctctcata 204  Q
    ||||||||||||||||||||||||||||||    
T  47997814 aacaactttttgacaactttctctctcata 47997785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 204
Target Start/End: Complemental strand, 48007101 - 48007072
Alignment:
Q  175 aacaactttttgacaactttctctctcata 204  Q
    ||||||||||||||||||||||||||||||    
T  48007101 aacaactttttgacaactttctctctcata 48007072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 204
Target Start/End: Original strand, 48649609 - 48649638
Alignment:
Q  175 aacaactttttgacaactttctctctcata 204  Q
    ||||||||||||||||||||||||||||||    
T  48649609 aacaactttttgacaactttctctctcata 48649638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 622501 - 622473
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  622501 acaactttttgacaactttctctctcata 622473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 6126484 - 6126512
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  6126484 acaactttttgacaactttctctctcata 6126512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 8066385 - 8066413
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  8066385 acaactttttgacaactttctctctcata 8066413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 26279914 - 26279942
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  26279914 acaactttttgacaactttctctctcata 26279942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 37303115 - 37303087
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  37303115 acaactttttgacaactttctctctcata 37303087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 43900798 - 43900770
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  43900798 acaactttttgacaactttctctctcata 43900770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 44334842 - 44334814
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  44334842 acaactttttgacaactttctctctcata 44334814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 25924915 - 25924877
Alignment:
Q  166 ccattttgcaacaactttttgacaactttctctctcata 204  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  25924915 ccattttgctacaactttttgacaactttctctctcata 25924877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 28965891 - 28965853
Alignment:
Q  166 ccattttgcaacaactttttgacaactttctctctcata 204  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  28965891 ccattttgttacaactttttgacaactttctctctcata 28965853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 204
Target Start/End: Original strand, 14094940 - 14094969
Alignment:
Q  175 aacaactttttgacaactttctctctcata 204  Q
    ||||||||||||||||||||||||||||||    
T  14094940 aacaactttttgacaactttctctctcata 14094969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 204
Target Start/End: Original strand, 17835641 - 17835670
Alignment:
Q  175 aacaactttttgacaactttctctctcata 204  Q
    ||||||||||||||||||||||||||||||    
T  17835641 aacaactttttgacaactttctctctcata 17835670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 8395372 - 8395400
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  8395372 acaactttttgacaactttctctctcata 8395400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 9954578 - 9954606
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  9954578 acaactttttgacaactttctctctcata 9954606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 19789117 - 19789089
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  19789117 acaactttttgacaactttctctctcata 19789089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 21506366 - 21506394
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  21506366 acaactttttgacaactttctctctcata 21506394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 29383587 - 29383615
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  29383587 acaactttttgacaactttctctctcata 29383615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 1790013 - 1790049
Alignment:
Q  168 attttgcaacaactttttgacaactttctctctcata 204  Q
    ||||||| |||||||||||||||||||||||||||||    
T  1790013 attttgcgacaactttttgacaactttctctctcata 1790049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 16645730 - 16645692
Alignment:
Q  166 ccattttgcaacaactttttgacaactttctctctcata 204  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  16645730 ccattttgctacaattttttgacaactttctctctcata 16645692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 17620091 - 17620053
Alignment:
Q  166 ccattttgcaacaactttttgacaactttctctctcata 204  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  17620091 ccattttgctacaattttttgacaactttctctctcata 17620053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 19426600 - 19426638
Alignment:
Q  166 ccattttgcaacaactttttgacaactttctctctcata 204  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  19426600 ccattttgtgacaactttttgacaactttctctctcata 19426638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 42060676 - 42060714
Alignment:
Q  166 ccattttgcaacaactttttgacaactttctctctcata 204  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  42060676 ccattttgctataactttttgacaactttctctctcata 42060714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 204
Target Start/End: Original strand, 9055296 - 9055325
Alignment:
Q  175 aacaactttttgacaactttctctctcata 204  Q
    ||||||||||||||||||||||||||||||    
T  9055296 aacaactttttgacaactttctctctcata 9055325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 5378657 - 5378685
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  5378657 acaactttttgacaactttctctctcata 5378685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 28824533 - 28824561
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  28824533 acaactttttgacaactttctctctcata 28824561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 29609905 - 29609877
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  29609905 acaactttttgacaactttctctctcata 29609877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 6851708 - 6851672
Alignment:
Q  168 attttgcaacaactttttgacaactttctctctcata 204  Q
    ||||||| |||||||||||||||||||||||||||||    
T  6851708 attttgctacaactttttgacaactttctctctcata 6851672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 5606593 - 5606632
Alignment:
Q  165 tccattttgcaacaactttttgacaactttctctctcata 204  Q
    ||||||||||||||||||||||| || |||||||||||||    
T  5606593 tccattttgcaacaactttttgataattttctctctcata 5606632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 30413777 - 30413739
Alignment:
Q  166 ccattttgcaacaactttttgacaactttctctctcata 204  Q
    ||||||||| ||||||||||||||||||| |||||||||    
T  30413777 ccattttgctacaactttttgacaactttatctctcata 30413739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 31635861 - 31635823
Alignment:
Q  166 ccattttgcaacaactttttgacaactttctctctcata 204  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  31635861 ccattttctaacaactttttgacaactttctctctcata 31635823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 204
Target Start/End: Complemental strand, 14797692 - 14797663
Alignment:
Q  175 aacaactttttgacaactttctctctcata 204  Q
    ||||||||||||||||||||||||||||||    
T  14797692 aacaactttttgacaactttctctctcata 14797663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 204
Target Start/End: Complemental strand, 41868411 - 41868382
Alignment:
Q  175 aacaactttttgacaactttctctctcata 204  Q
    ||||||||||||||||||||||||||||||    
T  41868411 aacaactttttgacaactttctctctcata 41868382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 7086165 - 7086137
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  7086165 acaactttttgacaactttctctctcata 7086137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 7498032 - 7498004
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  7498032 acaactttttgacaactttctctctcata 7498004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 27540037 - 27540073
Alignment:
Q  168 attttgcaacaactttttgacaactttctctctcata 204  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  27540037 attttgctacaactttttgacaactttttctctcata 27540073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 42665853 - 42665825
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  42665853 acaactttttgacaactttctctctcata 42665825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 43650590 - 43650562
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  43650590 acaactttttgacaactttctctctcata 43650562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 16995 - 17033
Alignment:
Q  166 ccattttgcaacaactttttgacaactttctctctcata 204  Q
    ||||||| | |||||||||||||||||||||||||||||    
T  16995 ccattttactacaactttttgacaactttctctctcata 17033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 31708390 - 31708428
Alignment:
Q  166 ccattttgcaacaactttttgacaactttctctctcata 204  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  31708390 ccattttataacaactttttgacaactttctctctcata 31708428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 204
Target Start/End: Original strand, 6046342 - 6046371
Alignment:
Q  175 aacaactttttgacaactttctctctcata 204  Q
    ||||||||||||||||||||||||||||||    
T  6046342 aacaactttttgacaactttctctctcata 6046371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 21023328 - 21023356
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  21023328 acaactttttgacaactttctctctcata 21023356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 31006081 - 31006117
Alignment:
Q  168 attttgcaacaactttttgacaactttctctctcata 204  Q
    ||||||| | |||||||||||||||||||||||||||    
T  31006081 attttgctaaaactttttgacaactttctctctcata 31006117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 34381042 - 34381070
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  34381042 acaactttttgacaactttctctctcata 34381070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 39595302 - 39595330
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  39595302 acaactttttgacaactttctctctcata 39595330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 40223826 - 40223798
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  40223826 acaactttttgacaactttctctctcata 40223798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 41192609 - 41192645
Alignment:
Q  168 attttgcaacaactttttgacaactttctctctcata 204  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  41192609 attttgctacaattttttgacaactttctctctcata 41192645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 6847 - 6875
Alignment:
Q  176 acaactttttgacaactttctctctcata 204  Q
    |||||||||||||||||||||||||||||    
T  6847 acaactttttgacaactttctctctcata 6875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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