View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12773_low_3 (Length: 487)
Name: NF12773_low_3
Description: NF12773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12773_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 13 - 475
Target Start/End: Complemental strand, 3187387 - 3186925
Alignment:
| Q |
13 |
gaatccctgataaaaagggggaaaatctagaaatgatagtacatattgcaatgaaatgtataatggaaggtagttgtaaattacttgtgcgaagattacc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
3187387 |
gaatccctgataaaaagggggaaaatctagaaatgatagtacatattgcaatgcaatgtataatagaaggtagttgtaaatcacttgtgcgaagattacc |
3187288 |
T |
|
| Q |
113 |
aagtagctactagttgttatgttctattttccaaataaagaatcaatctcaaggcaccaagtagctacatgtcttgtttgtggagataaatagataatgg |
212 |
Q |
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| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3187287 |
atgtagctactagttgttaagttctattttccaaataaagaatcaatctcaaggcaccaagtagctacatgtcttgtttgtggagataaatagataatgg |
3187188 |
T |
|
| Q |
213 |
aacatagtagtgctgtttgttttataatgtttaatgttctttaacttctcatggaaatgggagatgtacaaataaatggttaaattatggcttatgctat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3187187 |
aacatagtagtgctgtttgttttataatgtttaatgttctttaacttctcatggaaatgggagatgtacaaataaatggttaaattatggcttatgctat |
3187088 |
T |
|
| Q |
313 |
tctaactatcattgttgtctcaggtggcttatgcttttctaactatttatggcttatgcttttctaaataaatggttcaattttgttatgtttttcgaat |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3187087 |
tctaactatcattgttgtctcaggtggcttatgcttttctaactatttatggcttatgcttttctaaataaatggttcaattttgttatgttttttgaat |
3186988 |
T |
|
| Q |
413 |
aattgttgtctctcatgttggtaaatatattttgcatacctactctttctgatcttgttgttg |
475 |
Q |
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| T |
3186987 |
aattgttgtctctcatgttggtaaatatattttgcatacctactctttctgatcttgttgttg |
3186925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 469
Target Start/End: Complemental strand, 20697944 - 20697915
Alignment:
| Q |
440 |
tattttgcatacctactctttctgatcttg |
469 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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|
| T |
20697944 |
tattttgcatacctactctttctgatcttg |
20697915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 229 - 475
Target Start/End: Complemental strand, 52801095 - 52800840
Alignment:
| Q |
229 |
ttgttttataatgtttaatgttctttaacttctcatggaaatgggagatgtacaaataaatggttaaattatggcttatgctattctaactatcattgtt |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
52801095 |
ttgttttataatgtttaatgttctttaacttctcatggaaatggaagatgtacaaataaatggttaaattatggcctatgctattctaactatcattgtt |
52800996 |
T |
|
| Q |
329 |
gtctcaggtggcttatgcttttctaactatttatggcttatgcttttctaaataaatggttcaattttgttatgtttttcgaataattgttgtctctcat |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52800995 |
gtctcaggtggcttatgcttttctaactatttatggcttatgcttttctaaataaatggttcaattttgttatgtttttcgaataattgttgtctctcat |
52800896 |
T |
|
| Q |
429 |
gttggtaaatatatt---------ttgcatacctactctttctgatcttgttgttg |
475 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
52800895 |
gttggtaaatatattttgcttattttgcatacctactctttctgatcttgttgttg |
52800840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 243
Target Start/End: Complemental strand, 52801344 - 52801114
Alignment:
| Q |
13 |
gaatccctgataaaaagggggaaaatctagaaatgatagtacatattgcaatgaaatgtataatggaaggtagttgtaaattacttgtgcgaagattacc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||| |
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| T |
52801344 |
gaatccctgataaaaagggggaaaatctagaaatgatagtacatattgcaatgaaatgtataatagaaggtagtcgtaaatcacttgtgcgaagattacc |
52801245 |
T |
|
| Q |
113 |
aagtagctactagttgttatgttctattttccaaataaagaatcaatctcaaggcaccaagtagctacatgtcttgtttgtggagataaatagataatgg |
212 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52801244 |
aagtagctactagttgttaagttctattttccaaataaagaatcaatctcaaggcaccaagtagctacatgtcttgtttgtggagataaatagacaatgg |
52801145 |
T |
|
| Q |
213 |
aacatagtagtgctgtttgttttataatgtt |
243 |
Q |
| |
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|||||||||| |||||||||||||||||||| |
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| T |
52801144 |
aacatagtagcgctgtttgttttataatgtt |
52801114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 18886384 - 18886617
Alignment:
| Q |
17 |
ccctgataaaaagggggaaaatctagaaatgatagtacatattgcaatgaaatgtataatggaaggtagttgtaaattacttgtgcgaagattaccaagt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||| |||||||||||||||||||||| |
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| T |
18886384 |
ccctgataaaaagggggaaaatctagaaatgatagtacatattgcaataaaatgtataatagaaggtagttataaatcacttgtgcgaagattaccaagt |
18886483 |
T |
|
| Q |
117 |
agctactagttgttatgttctattttccaaataaagaatcaatctcaaggcaccaagtagctacatgtcttgtttgtggagataaatagataatggaaca |
216 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| | || ||||||||| |
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| T |
18886484 |
agctactagttgttaagttctattttccaaataaagaatcaatctcaaggcaacaagcagctacatgtcttgtttgtggagatagacggacaatggaaca |
18886583 |
T |
|
| Q |
217 |
tagtagtgctgtttgttttataatgtttaatgtt |
250 |
Q |
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||||||||||||||||||||| |||||||||||| |
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| T |
18886584 |
tagtagtgctgtttgttttattatgtttaatgtt |
18886617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 229 - 324
Target Start/End: Original strand, 18886901 - 18886997
Alignment:
| Q |
229 |
ttgttttataatgtttaatgttctttaacttctcatggaaatgggagatgtacaaat-aaatggttaaattatggcttatgctattctaactatcat |
324 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||| || ||||||||| |||||| ||||||||| ||||||||||||||| ||||||||||||| |
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| T |
18886901 |
ttgttttataatgtttagtgttctttaaattctcatgcaagtgggagatgcacaaataaaatggttatattatggcttatgcttttctaactatcat |
18886997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 25 - 169
Target Start/End: Original strand, 3917386 - 3917531
Alignment:
| Q |
25 |
aaaagggggaaaatctagaaatga-tagtacatattgcaatgaaatgtataatggaaggtagttgtaaattacttgtgcgaagattaccaagtagctact |
123 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
3917386 |
aaaagggggaaaatctagaaatgaatagtacatattgcaatgaaatgtataatagaaggtagttgtaaatcacttgtgcgaagattaccaaggagctact |
3917485 |
T |
|
| Q |
124 |
agttgttatgttctattttccaaataaagaatcaatctcaaggcac |
169 |
Q |
| |
|
|||||| | |||||||||||| |||||||||||||||||||||||| |
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|
| T |
3917486 |
agttgtcaagttctattttccgaataaagaatcaatctcaaggcac |
3917531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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