View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12773_low_5 (Length: 439)
Name: NF12773_low_5
Description: NF12773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12773_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 149 - 435
Target Start/End: Complemental strand, 48904531 - 48904242
Alignment:
| Q |
149 |
tggtcataacactctttatgtattaaataagggatttctgattaccgttggtgctgctgatttatttccaatttatttgtggtaaaccttttttcccatc |
248 |
Q |
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| T |
48904531 |
tggtcataacactatttatgtattaaataagggatttctgattaccgttggtgctgctgatttatttccaatttatttgtggtaaaccttttttcccatc |
48904432 |
T |
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| Q |
249 |
accagattttattccattgagtttccttgctaagatttttaaggagctaaatggtgtttatgtcaggggacaatctacaatcttaagaagatgacacaaa |
348 |
Q |
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| T |
48904431 |
accagattttattccattgagttttcttgctaagatttttaaggagctaaatggtgtttatgtcaggggacaatctacaatcttaagaagatgacacaaa |
48904332 |
T |
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| Q |
349 |
caaaaatgtt---agagttaatataagtaaacattttgttctaagcaagaatcatgtcttgtttgattccttaagctattcatctctctc |
435 |
Q |
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| T |
48904331 |
caaaaatgttaaaagagttaatataagtaaacattttgttctaagcaagaatcatgtcttgtttgattccttaagctattcatttctctc |
48904242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 48904661 - 48904565
Alignment:
| Q |
19 |
tctcttttattgggtgaatttattgagtgaagttcatgtgattttcaccacttacaatcatttcaaaatctgagatttacatgagtttctcccaata |
115 |
Q |
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| T |
48904661 |
tctcttttattgggtgaatttattgagtgaagttcatgtgattttcaccacttacaatcatttcaaaatctgagatttacatgagtttctcccaata |
48904565 |
T |
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