View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12773_low_7 (Length: 390)
Name: NF12773_low_7
Description: NF12773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12773_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 11 - 380
Target Start/End: Complemental strand, 46451572 - 46451203
Alignment:
| Q |
11 |
caaaggaacttccacgtagtaattgatgttgctgaaagccatagaaaggggttgaaatgggagaaccattcctttttgcttaaaatgctttcctgagaag |
110 |
Q |
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| T |
46451572 |
caaaggaacttccacgtagtaattgatattgctgaaagccatagaaaggggttgaaatgggagaaccattcctttttgcttaaaatgctttcctgagaag |
46451473 |
T |
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| Q |
111 |
ataagacagttggataaaatgttatgtctggtctatacacatacagtcatgtaaaaaataaatgtataatctgaaatttatattgacaaaccacttgatg |
210 |
Q |
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| T |
46451472 |
ataagacagttggataaaatgttatgtctggtctatacacatacagtcatgtaaaaaataaatgtataatctgaaatttatattgacaaaccacttgatg |
46451373 |
T |
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| Q |
211 |
cggaatgctgcaagtactctctcagctcaataacaacattttcaccatttcttctcttttctctttcttgcagctcaccctttgagacaacgggttgttg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46451372 |
cggaatgctgcaagtactctctcagctcaataacaacattttcaccatttcttctcttttctctttcttgcagctcaccctttgagacaacgggttgttg |
46451273 |
T |
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| Q |
311 |
ttttcccagagctgaagcaaatattgagagagcaagatattatgaaatctgtctctctaacaaagttatt |
380 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46451272 |
ttttcccagagctgaagcaaatattaagagagcaagatattatgaaatctgtctctctaacaaagttatt |
46451203 |
T |
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