View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12773_low_8 (Length: 374)

Name: NF12773_low_8
Description: NF12773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12773_low_8
NF12773_low_8
[»] chr7 (6 HSPs)
chr7 (81-369)||(5684044-5684332)
chr7 (81-369)||(5709094-5709382)
chr7 (322-369)||(17473877-17473924)
chr7 (322-369)||(17509360-17509407)
chr7 (322-369)||(17543807-17543854)
chr7 (322-369)||(17579290-17579337)
[»] chr2 (4 HSPs)
chr2 (313-369)||(12704598-12704654)
chr2 (323-363)||(22597054-22597094)
chr2 (318-369)||(12891249-12891300)
chr2 (323-360)||(9978832-9978869)
[»] chr5 (3 HSPs)
chr5 (322-369)||(17699473-17699520)
chr5 (318-363)||(3079444-3079489)
chr5 (313-369)||(7771957-7772013)
[»] chr4 (8 HSPs)
chr4 (323-356)||(24611963-24611996)
chr4 (318-369)||(478162-478213)
chr4 (322-369)||(22757014-22757061)
chr4 (322-369)||(39837514-39837561)
chr4 (313-363)||(7083975-7084025)
chr4 (320-350)||(40199789-40199819)
chr4 (324-369)||(20887922-20887967)
chr4 (313-369)||(25658075-25658131)
[»] chr1 (1 HSPs)
chr1 (323-363)||(20411484-20411524)
[»] chr3 (3 HSPs)
chr3 (318-369)||(13702143-13702194)
chr3 (322-369)||(35174624-35174671)
chr3 (322-368)||(14585379-14585425)


Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 81 - 369
Target Start/End: Original strand, 5684044 - 5684332
Alignment:
Q  81 tctgtctaatgatatttttgaccaatcatccacttaatcaacctcactcacacgggcaatacagggataaagtactccactaaactatatttttggttcc 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5684044 tctgtctaatgatatttttgaccaatcatccacttaatcaacctcactcacacgggcaatacagggataaagtactccactaagctatatttttggttcc 5684143  T
Q  181 aattcttaattttatttaagattttaatatagtggaatatgcatttggatgaccatttttattcattataatttcatccgtgtatggttctattaatttt 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5684144 aattcttaattttatttaagattttaatatagtggaatatgcatttggatgaccatttttattcattataatttcatccgtgtatggttctattaatttt 5684243  T
Q  281 ctccttgagtgagtgaagttgtattcattaaactttgttcccctctctcttctctccttcttaaaccttagtcgtcaccctttgcttct 369  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||| |||| ||||| |||||    
T  5684244 ctccttgagtgactgaagttgtattcattaaactttcttcccctctctcttctctcctttttaaaccctagttgtcatccttttcttct 5684332  T

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Target: chr7; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 81 - 369
Target Start/End: Original strand, 5709094 - 5709382
Alignment:
Q  81 tctgtctaatgatatttttgaccaatcatccacttaatcaacctcactcacacgggcaatacagggataaagtactccactaaactatatttttggttcc 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5709094 tctgtctaatgatatttttgaccaatcatccacttaatcaacctcactcacacgggcaatacagggataaagtactccactaagctatatttttggttcc 5709193  T
Q  181 aattcttaattttatttaagattttaatatagtggaatatgcatttggatgaccatttttattcattataatttcatccgtgtatggttctattaatttt 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5709194 aattcttaattttatttaagattttaatatagtggaatatgcatttggatgaccatttttattcattataatttcatccgtgtatggttctattaatttt 5709293  T
Q  281 ctccttgagtgagtgaagttgtattcattaaactttgttcccctctctcttctctccttcttaaaccttagtcgtcaccctttgcttct 369  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||| |||| ||||| |||||    
T  5709294 ctccttgagtgactgaagttgtattcattaaactttcttcccctctctcttctctcctttttaaaccctagttgtcatccttttcttct 5709382  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 322 - 369
Target Start/End: Complemental strand, 17473924 - 17473877
Alignment:
Q  322 cctctctcttctctccttcttaaaccttagtcgtcaccctttgcttct 369  Q
    |||||||||||||||||||| ||||| |||| |||||||||| |||||    
T  17473924 cctctctcttctctccttctcaaaccctagttgtcacccttttcttct 17473877  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 322 - 369
Target Start/End: Complemental strand, 17509407 - 17509360
Alignment:
Q  322 cctctctcttctctccttcttaaaccttagtcgtcaccctttgcttct 369  Q
    |||||||||||||||||||| ||||| |||| |||||||||| |||||    
T  17509407 cctctctcttctctccttctcaaaccctagttgtcacccttttcttct 17509360  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 322 - 369
Target Start/End: Original strand, 17543807 - 17543854
Alignment:
Q  322 cctctctcttctctccttcttaaaccttagtcgtcaccctttgcttct 369  Q
    |||||||||||||||||||| ||||| |||| |||||||||| |||||    
T  17543807 cctctctcttctctccttctcaaaccctagttgtcacccttttcttct 17543854  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 322 - 369
Target Start/End: Original strand, 17579290 - 17579337
Alignment:
Q  322 cctctctcttctctccttcttaaaccttagtcgtcaccctttgcttct 369  Q
    |||||||||||||||||||| ||||| |||| |||||||||| |||||    
T  17579290 cctctctcttctctccttctcaaaccctagttgtcacccttttcttct 17579337  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 313 - 369
Target Start/End: Original strand, 12704598 - 12704654
Alignment:
Q  313 ctttgttcccctctctcttctctccttcttaaaccttagtcgtcaccctttgcttct 369  Q
    |||| |||| ||||||||||||||||||| ||||| ||||||||||||||| |||||    
T  12704598 ctttcttcctctctctcttctctccttctcaaaccctagtcgtcacccttttcttct 12704654  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 363
Target Start/End: Original strand, 22597054 - 22597094
Alignment:
Q  323 ctctctcttctctccttcttaaaccttagtcgtcacccttt 363  Q
    ||||||||||||||||||| ||||| |||||||||||||||    
T  22597054 ctctctcttctctccttctcaaaccctagtcgtcacccttt 22597094  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 318 - 369
Target Start/End: Complemental strand, 12891300 - 12891249
Alignment:
Q  318 ttcccctctctcttctctccttcttaaaccttagtcgtcaccctttgcttct 369  Q
    |||| ||||||||||||||||||| ||||| |||||||||||| || |||||    
T  12891300 ttcctctctctcttctctccttctcaaaccctagtcgtcacccctttcttct 12891249  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 360
Target Start/End: Complemental strand, 9978869 - 9978832
Alignment:
Q  323 ctctctcttctctccttcttaaaccttagtcgtcaccc 360  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  9978869 ctctctcttctctctttctcaaaccttagtcgtcaccc 9978832  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 322 - 369
Target Start/End: Original strand, 17699473 - 17699520
Alignment:
Q  322 cctctctcttctctccttcttaaaccttagtcgtcaccctttgcttct 369  Q
    |||||||||||||||||||| ||||| ||||||||||||||| |||||    
T  17699473 cctctctcttctctccttctcaaaccctagtcgtcacccttttcttct 17699520  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 363
Target Start/End: Complemental strand, 3079489 - 3079444
Alignment:
Q  318 ttcccctctctcttctctccttcttaaaccttagtcgtcacccttt 363  Q
    |||| ||||||||||||||||||| ||| | |||||||||||||||    
T  3079489 ttcctctctctcttctctccttctcaaatcctagtcgtcacccttt 3079444  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 369
Target Start/End: Complemental strand, 7772013 - 7771957
Alignment:
Q  313 ctttgttcccctctctcttctctccttcttaaaccttagtcgtcaccctttgcttct 369  Q
    |||| |||| |||||||||||||||||| |||||| |||  |||||||||| |||||    
T  7772013 ctttcttcctctctctcttctctccttcctaaaccctagctgtcacccttttcttct 7771957  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 323 - 356
Target Start/End: Complemental strand, 24611996 - 24611963
Alignment:
Q  323 ctctctcttctctccttcttaaaccttagtcgtc 356  Q
    ||||||||||||||||||||||||||||||||||    
T  24611996 ctctctcttctctccttcttaaaccttagtcgtc 24611963  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 318 - 369
Target Start/End: Complemental strand, 478213 - 478162
Alignment:
Q  318 ttcccctctctcttctctccttcttaaaccttagtcgtcaccctttgcttct 369  Q
    |||||||||||||||||||||||| ||||| ||| |||||||| || |||||    
T  478213 ttcccctctctcttctctccttctcaaaccctagccgtcacccctttcttct 478162  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 322 - 369
Target Start/End: Original strand, 22757014 - 22757061
Alignment:
Q  322 cctctctcttctctccttcttaaaccttagtcgtcaccctttgcttct 369  Q
    |||||||||||||||||||| ||||| ||| ||||||||||| |||||    
T  22757014 cctctctcttctctccttctcaaaccctagccgtcacccttttcttct 22757061  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 322 - 369
Target Start/End: Original strand, 39837514 - 39837561
Alignment:
Q  322 cctctctcttctctccttcttaaaccttagtcgtcaccctttgcttct 369  Q
    |||||||||||||||||||| ||||  ||||||||||||||| |||||    
T  39837514 cctctctcttctctccttctcaaacactagtcgtcacccttttcttct 39837561  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 363
Target Start/End: Complemental strand, 7084025 - 7083975
Alignment:
Q  313 ctttgttcccctctctcttctctccttcttaaaccttagtcgtcacccttt 363  Q
    |||| |||| ||||||||| ||||||||| ||||| |||||||||||||||    
T  7084025 ctttcttcctctctctcttttctccttctcaaaccctagtcgtcacccttt 7083975  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 320 - 350
Target Start/End: Complemental strand, 40199819 - 40199789
Alignment:
Q  320 cccctctctcttctctccttcttaaacctta 350  Q
    |||||||||||||||||||||||||||||||    
T  40199819 cccctctctcttctctccttcttaaacctta 40199789  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 369
Target Start/End: Complemental strand, 20887967 - 20887922
Alignment:
Q  324 tctctcttctctccttcttaaaccttagtcgtcaccctttgcttct 369  Q
    |||||||||||||||||| ||||| ||| ||||||||||| |||||    
T  20887967 tctctcttctctccttctaaaaccctagccgtcacccttttcttct 20887922  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 369
Target Start/End: Original strand, 25658075 - 25658131
Alignment:
Q  313 ctttgttcccctctctcttctctccttcttaaaccttagtcgtcaccctttgcttct 369  Q
    |||| |||| |||| |||||||||||||| ||||| ||| ||||||||||| |||||    
T  25658075 ctttcttcctctctatcttctctccttctcaaaccctagccgtcacccttttcttct 25658131  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 363
Target Start/End: Original strand, 20411484 - 20411524
Alignment:
Q  323 ctctctcttctctccttcttaaaccttagtcgtcacccttt 363  Q
    ||||||||||||||||||| ||||||||| |||||||||||    
T  20411484 ctctctcttctctccttctcaaaccttagacgtcacccttt 20411524  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 318 - 369
Target Start/End: Complemental strand, 13702194 - 13702143
Alignment:
Q  318 ttcccctctctcttctctccttcttaaaccttagtcgtcaccctttgcttct 369  Q
    |||||||||||||||||||||||| ||||| ||| |||||||| || |||||    
T  13702194 ttcccctctctcttctctccttctcaaaccatagccgtcacccctttcttct 13702143  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 322 - 369
Target Start/End: Original strand, 35174624 - 35174671
Alignment:
Q  322 cctctctcttctctccttcttaaaccttagtcgtcaccctttgcttct 369  Q
    |||||||||| ||||||||| ||||| ||||||||||||||| |||||    
T  35174624 cctctctcttttctccttctcaaaccctagtcgtcacccttttcttct 35174671  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 368
Target Start/End: Original strand, 14585379 - 14585425
Alignment:
Q  322 cctctctcttctctccttcttaaaccttagtcgtcaccctttgcttc 368  Q
    |||||||||||||||||||| ||||| |||||||| |||||| ||||    
T  14585379 cctctctcttctctccttctcaaaccctagtcgtcgcccttttcttc 14585425  T

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