View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12773_low_9 (Length: 348)
Name: NF12773_low_9
Description: NF12773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12773_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 8 - 333
Target Start/End: Original strand, 497401 - 497733
Alignment:
| Q |
8 |
tgacatgtcattgatatttgttgaacataatattataagacataacatgaactaatcttaaacataaataagtcacatggatattattatgaatgtaagt |
107 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
497401 |
tgacatgtcattgatatttgttgaacaaaatattataagacataacatgaaccaatcttaaacataaataggtcacatggatattattatgaatgtaagt |
497500 |
T |
|
| Q |
108 |
ggatcgataaaggaccaaaatgaagtgggaattttttgaaaaatgaaagacgatatttttaaaagaaatgatatatgtacaacaattttatcataattat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
497501 |
ggatcgataaaggaccaaaatgaagtggaaattttttgaaaaatggaagacgttatttttaaaagaaatgatatatgtacaacaactttatcataattat |
497600 |
T |
|
| Q |
208 |
tggacaactctcgtactcgtgttcttcctcattctc-------tttcttttgagaaattaatcgcgagtgctatttgtcctgatagaatttcgtgaaccg |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||| || |
|
|
| T |
497601 |
tggacaactctcgtactcgtgttcttactcattctctttcttttttcttttgagaaattattcacgagtgctatttgtcctgatagaatttcgtgaaacg |
497700 |
T |
|
| Q |
301 |
tccacaaagtgaaatcaaccaattgaaattgtt |
333 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
|
|
| T |
497701 |
tccacaaagtgaaatcagccaattgaaattgtt |
497733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 6912627 - 6912681
Alignment:
| Q |
160 |
atatttttaaaagaaatgatatatgtacaacaattttatcataattattggacaa |
214 |
Q |
| |
|
|||||||||||||||||| ||| |||||||| |||||||||||||| |||||||| |
|
|
| T |
6912627 |
atatttttaaaagaaatgttatttgtacaaccattttatcataatttttggacaa |
6912681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 203
Target Start/End: Original strand, 18880786 - 18880818
Alignment:
| Q |
171 |
agaaatgatatatgtacaacaattttatcataa |
203 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
|
|
| T |
18880786 |
agaaatgatatatgtacaacaattttatgataa |
18880818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 216
Target Start/End: Original strand, 8805233 - 8805276
Alignment:
| Q |
173 |
aaatgatatatgtacaacaattttatcataattattggacaact |
216 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||| |||||||||| |
|
|
| T |
8805233 |
aaatgatatatgtacaactattttatgataatttttggacaact |
8805276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University