View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12774_low_1 (Length: 365)
Name: NF12774_low_1
Description: NF12774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12774_low_1 |
 | |
|
| [»] scaffold0067 (1 HSPs) |
| | |
|
| [»] scaffold0043 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 17)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 27999894 - 28000229
Alignment:
| Q |
1 |
ataaaagaaaaatgatttgtttctattttctttaattttatacacgcaaactaacagattatttaacttatatttttatttggattacataattacagga |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27999894 |
ataaaagaaaaatgatttgtttgtattttcttgaattttatacacgcaaactaacagattatttaacttatatttttatttggattacataattacagga |
27999993 |
T |
|
| Q |
101 |
atcagattcatactgtcttcccatatgggaacgtgttcaatgtctttcaataccatcacatatcttgtgcaatattaaagagattatactgatgaatatt |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
27999994 |
atcagattcatactgtctacccatatgggaacgtgctcaatgtctttcaataccatcacatatcttgtgcaatattaaagagattacactgaataatatt |
28000093 |
T |
|
| Q |
201 |
tcgaagatgaaatcagtattcatcctatccattgcttcaagaatgttgttggagactttgacaatcagtaagtgtgatgagttgaagcacatcataatag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||||||||| | |||||||| |||||||||||||| |||||||| || ||||||| |
|
|
| T |
28000094 |
tcgaagatgaaatcagtattcatcctatctattgctccaagaatgttgttggaatcattgacaattagtaagtgtgatgaattgaagcatattataatag |
28000193 |
T |
|
| Q |
301 |
acatgggagatcatgacaacaatggtggcaataact |
336 |
Q |
| |
|
|| | | |||||| |||||| ||||| |||||||| |
|
|
| T |
28000194 |
acgttgatgatcataacaacactggtgccaataact |
28000229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 56 - 348
Target Start/End: Original strand, 28080798 - 28081087
Alignment:
| Q |
56 |
agattatttaacttatatttttatttggattacataattacaggaatcagattcatactgtcttcccatatgggaacgtgttcaatgtctttcaatacca |
155 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| | ||||| ||| |||||||||||||| ||||| ||||||||||||| |
|
|
| T |
28080798 |
agattatttaacttatatttttattttgattacataattacaggaatcaaagtcatatccccttaacatatgggaacgtgctcaatttctttcaatacca |
28080897 |
T |
|
| Q |
156 |
tcacatatcttgtgcaatattaaagagattatactgatgaatatttcgaagatgaaatcagtattcatcctatccattgcttcaagaatgttgttggaga |
255 |
Q |
| |
|
||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28080898 |
tcaaatatcttgtggaatattaaagagattacactgatgaatatttcgaagatgaaatcagtattcatcctatccattgctccaagaatgttgttggaga |
28080997 |
T |
|
| Q |
256 |
ctttgacaatcagtaagtgtgatgagttgaagcacatcataatagacatgggagatcatgacaacaatggtggcaataactggggcactgtct |
348 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||| ||| ||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
28080998 |
ctttgacaatcagtaagtgtgatgaattgaagcacattataatagacacaggatatcat---aacactggtggcaataactggggcactgtct |
28081087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 7 - 348
Target Start/End: Original strand, 11409821 - 11410171
Alignment:
| Q |
7 |
gaaaaatgatttgtttctattttctttaattttatacacgcaaactaacagattatttaacttatatttttatttggattacataattacaggaatcaga |
106 |
Q |
| |
|
||||| |||||||||| |||||||| |||||||||||| || ||||| | |||||||||||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
11409821 |
gaaaagtgatttgtttgcattttcttgaattttatacactcatactaagatattatttaacttatatttttatttggattacatagttacaggaatcaaa |
11409920 |
T |
|
| Q |
107 |
ttcata----ctgtcttcc-----catatgggaacgtgttcaatgtctttcaataccatcacatatcttgtgcaatattaaagagattatactgatgaat |
197 |
Q |
| |
|
|||||| ||| || | |||||||||||||| ||||||||||| || ||||||| ||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
11409921 |
ttcatattccctggattacataagcatatgggaacgtgctcaatgtcttttaagaccatcagatatcttgtgcaatattaaagagattacactgaggaat |
11410020 |
T |
|
| Q |
198 |
atttcgaagatgaaatcagtattcatcctatccattgcttcaagaatgttgttggagactttgacaatcagtaagtgtgatgagttgaagcacatcataa |
297 |
Q |
| |
|
|||| |||||||| ||| |||||||||||||| |||||| ||| |||||||||||| ||||||||||| || || |||||||| || |||||||| || | |
|
|
| T |
11410021 |
attttgaagatgagatcggtattcatcctatctattgctccaaaaatgttgttggaaactttgacaattaggaactgtgatgaattaaagcacattatta |
11410120 |
T |
|
| Q |
298 |
tagacatgggagatcatgacaacaatggtggcaataactggggcactgtct |
348 |
Q |
| |
|
|||||| ||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
11410121 |
tagacaccggagatcatgacaactctggtgccaataactggggcactgtct |
11410171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 122 - 336
Target Start/End: Original strand, 27910978 - 27911192
Alignment:
| Q |
122 |
catatgggaacgtgttcaatgtctttcaataccatcacatatcttgtgcaatattaaagagattatactgatgaatatttcgaagatgaaatcagtattc |
221 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
27910978 |
catatgggaacgtgttcaatgtctttcaagacaatcacatatcttatgcaatattaaagagattacactgaagaatatttcgaagatgaaatcagtattc |
27911077 |
T |
|
| Q |
222 |
atcctatccattgcttcaagaatgttgttggagactttgacaatcagtaagtgtgatgagttgaagcacatcataatagacatgggagatcatgacaaca |
321 |
Q |
| |
|
|||||||| |||||| || ||||||||||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||| | ||||||||||||| |
|
|
| T |
27911078 |
atcctatcgattgctccaggaatgttgttggagactttgacaattagtaagtgtgacgaattgaagcacattataatagacattgatgatcatgacaaca |
27911177 |
T |
|
| Q |
322 |
atggtggcaataact |
336 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
27911178 |
ctggtggcaataact |
27911192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 83 - 348
Target Start/End: Original strand, 28178979 - 28179244
Alignment:
| Q |
83 |
gattacataattacaggaatcagattcatactgtcttcccatatgggaacgtgttcaatgtctttcaataccatcacatatcttgtgcaatattaaagag |
182 |
Q |
| |
|
||||| |||||| ||||||||| ||||||| |||| |||||||||| ||| |||||||||||||| || ||||||||||||||||||||||||| || |
|
|
| T |
28178979 |
gattatataattgcaggaatcaaattcatatcctcttaacatatgggaaagtgctcaatgtctttcaagacaatcacatatcttgtgcaatattaaaaag |
28179078 |
T |
|
| Q |
183 |
attatactgatgaatatttcgaagatgaaatcagtattcatcctatccattgcttcaagaatgttgttggagactttgacaatcagtaagtgtgatgagt |
282 |
Q |
| |
|
|||| ||| ||| ||||| ||||||||||||||||| ||||| || |||||| ||| ||||||||||||| | ||||||||| ||||||| |||| | |
|
|
| T |
28179079 |
attacactctggaaaatttcaaagatgaaatcagtatttatcctgtctattgctccaacaatgttgttggagtcattgacaatctataagtgtaatgaat |
28179178 |
T |
|
| Q |
283 |
tgaagcacatcataatagacatgggagatcatgacaacaatggtggcaataactggggcactgtct |
348 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
28179179 |
tgaagcacattataatagacatgggagatcatgacaacactggtggcaataactggggcactgtct |
28179244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 155 - 348
Target Start/End: Original strand, 28049158 - 28049351
Alignment:
| Q |
155 |
atcacatatcttgtgcaatattaaagagattatactgatgaatatttcgaagatgaaatcagtattcatcctatccattgcttcaagaatgttgttggag |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
28049158 |
atcacatatcttgtgcaatattaaagagattacactgaagaatatttcgaagatgaaatcagtattcatcctatctattgcttctagaatgttgttggag |
28049257 |
T |
|
| Q |
255 |
actttgacaatcagtaagtgtgatgagttgaagcacatcataatagacatgggagatcatgacaacaatggtggcaataactggggcactgtct |
348 |
Q |
| |
|
|| |||| ||| || ||||||||||| ||||||||||| ||||||||||| | ||||||||||||| ||||| || ||||| ||||||||||| |
|
|
| T |
28049258 |
accttgagaattagcaagtgtgatgaattgaagcacataataatagacattgatgatcatgacaacactggtgccattaactcgggcactgtct |
28049351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 50 - 348
Target Start/End: Complemental strand, 27463262 - 27462967
Alignment:
| Q |
50 |
actaacagattatttaacttatatttttatttggattacataattacaggaatcagattcatactgtcttcccatatgggaacgtgttcaatgtctttca |
149 |
Q |
| |
|
||||| |||||||||||||| |||||| ||||||||||||||||| ||||||||| |||| || || ||| |||||||||||||| ||||||||||||| |
|
|
| T |
27463262 |
actaagagattatttaacttctattttcatttggattacataattgcaggaatcaaattcctattgccttaacatatgggaacgtgctcaatgtctttca |
27463163 |
T |
|
| Q |
150 |
ataccatcacatatcttgtgcaatattaaagagattatactgatgaatatttcgaagatgaaatcagtattcatcctatccattgcttcaagaatgttgt |
249 |
Q |
| |
|
| || |||||||||| ||| ||||||||||||||||| ||| ||||||| ||||||||||| ||||| |||||||| | |||| |||||||||||| |
|
|
| T |
27463162 |
agacaatcacatatcctgtacaatattaaagagattaggctgggatatatttcaaagatgaaatctgtatttatcctatctactgctccaagaatgttgt |
27463063 |
T |
|
| Q |
250 |
tggagactttgacaatcagtaagtgtgatgagttgaagcacatcataatagacatgggagatcatgacaacaatggtggcaataactggggcactgtct |
348 |
Q |
| |
|
|||||||||| || || || |||||||| ||||||||||| ||| |||||| ||||| ||| ||| |||||||||||||| ||||| ||||| |
|
|
| T |
27463062 |
tggagactttatgtattagcaactgtgatgaattgaagcacataatagtagacacaggagaaaatg---acagtggtggcaataacttgggcaatgtct |
27462967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 91 - 325
Target Start/End: Original strand, 27972747 - 27972981
Alignment:
| Q |
91 |
aattacaggaatcagattcatactgtcttcccatatgggaacgtgttcaatgtctttcaataccatcacatatcttgtgcaatattaaagagattatact |
190 |
Q |
| |
|
|||| ||||||||| ||||||| | ||| |||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||| | | |
|
|
| T |
27972747 |
aattgcaggaatcaaattcatattcccttaacatatgggaacgtgctcaatgtctttcaagacaatcacatatcttgtgcaatattaaagagattaaatt |
27972846 |
T |
|
| Q |
191 |
gatgaatatttcgaagatgaaatcagtattcatcctatccattgcttcaagaatgttgttggagactttgacaatcagtaagtgtgatgagttgaagcac |
290 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||| || | || |||||||| || ||| || |
|
|
| T |
27972847 |
gagagatatttcgaagatgaaatccgtattcatcctatctattgctccaagaatgttgttggagactttatggattatcaattgtgatgaattaaagtac |
27972946 |
T |
|
| Q |
291 |
atcataatagacatgggagatcatgacaacaatgg |
325 |
Q |
| |
|
|| |||||||||| | ||||||||||||||||| |
|
|
| T |
27972947 |
ataataatagacactgatgatcatgacaacaatgg |
27972981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 75 - 348
Target Start/End: Complemental strand, 28512421 - 28512142
Alignment:
| Q |
75 |
tttatttggattacataattacaggaatcagattcatactgtcttcccatatgggaacgtgttcaatgtctttcaataccatcacatatcttgtgcaata |
174 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||| ||| |||||||||||||| |||||||||||||| || ||||||||||||||||||| |
|
|
| T |
28512421 |
tttatttggattacataattgcaggaatcaaattcatatccccttaacatatgggaacgtgctcaatgtctttcaagacaatcacatatcttgtgcaatg |
28512322 |
T |
|
| Q |
175 |
ttaaagagattatactgatgaatatttcgaagatgaaatcagtattcatcctatccattgcttcaagaatgttgttggagactttgacaatcagtaagtg |
274 |
Q |
| |
|
||| |||||||| | ||| ||| | || ||||||||||| |||| | |||||| | |||| |||||||||| ||||| ||||||| || | || || |
|
|
| T |
28512321 |
ttacagagattacattgagcaatgtctcaaagatgaaatcgttatttaacctatctactgctccaagaatgttattggaaactttgaatatttggaactg |
28512222 |
T |
|
| Q |
275 |
tgatgagttgaagcacatcat---aatagacatgggagatcat---gacaacaatggtggcaataactggggcactgtct |
348 |
Q |
| |
|
| |||| | || |||||| || ||||||||| ||||||||| ||||||| || ||||||||||||||||||||||| |
|
|
| T |
28512221 |
taatgaatggaggcacattataacaatagacattggagatcatcacgacaacactgatggcaataactggggcactgtct |
28512142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 75 - 348
Target Start/End: Complemental strand, 28471375 - 28471096
Alignment:
| Q |
75 |
tttatttggattacataattacaggaatcagattcatactgtcttcccatatgggaacgtgttcaatgtctttcaataccatcacatatcttgtgcaata |
174 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||| ||| |||||||||||||| |||||||||||||| || ||||||||||||||||||| |
|
|
| T |
28471375 |
tttatttggattacataattgcaggaatcaaattcatatccccttaacatatgggaacgtgctcaatgtctttcaagacaatcacatatcttgtgcaatg |
28471276 |
T |
|
| Q |
175 |
ttaaagagattatactgatgaatatttcgaagatgaaatcagtattcatcctatccattgcttcaagaatgttgttggagactttgacaatcagtaagtg |
274 |
Q |
| |
|
||| |||||||| | ||| ||| | || ||||||||||| |||| | |||||| | |||| |||||||||| ||||| ||||||| || | || || |
|
|
| T |
28471275 |
ttacagagattacattgagcaatgtctcaaagatgaaatcgttatttaacctatctactgctccaagaatgttattggaaactttgaatatttggaactg |
28471176 |
T |
|
| Q |
275 |
tgatgagttgaagcacatcat---aatagacatgggagatcat---gacaacaatggtggcaataactggggcactgtct |
348 |
Q |
| |
|
| |||| | || |||||| || |||||||| ||||||||| ||||||| || ||||||||||||||| ||||||| |
|
|
| T |
28471175 |
taatgaatggaggcacattataacaatagacaatggagatcatcaagacaacactgatggcaataactggggaactgtct |
28471096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 124 - 311
Target Start/End: Complemental strand, 18029753 - 18029566
Alignment:
| Q |
124 |
tatgggaacgtgttcaatgtctttcaataccatcacatatcttgtgcaatattaaagagattatactgatgaatatttcgaagatgaaatcagtattcat |
223 |
Q |
| |
|
|||||||||||| |||||||||||||| || |||||||||| ||||||| ||||||| ||| | |||| |||| || | ||| ||||||||||| || |
|
|
| T |
18029753 |
tatgggaacgtgctcaatgtctttcaagactatcacatatcatgtgcaaaattaaagtgataacactggtgaaccttccacggataaaatcagtatttat |
18029654 |
T |
|
| Q |
224 |
cctatccattgcttcaagaatgttgttggagactttgacaatcagtaagtgtgatgagttgaagcacatcataatagacatgggagat |
311 |
Q |
| |
|
| |||| |||||||| |||||||||||||||| ||||| | | | |||||||| |||||||| || ||| ||||||| |||||| |
|
|
| T |
18029653 |
cttatctgttgcttcaggaatgttgttggagaccttgactgttaaaagttgtgatgaattgaagcatataatagtagacattggagat |
18029566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 83 - 229
Target Start/End: Complemental strand, 17747753 - 17747610
Alignment:
| Q |
83 |
gattacataattacaggaatcagattcatactgtcttcccatatgggaacgtgttcaatgtctttcaataccatcacatatcttgtgcaatattaaagag |
182 |
Q |
| |
|
||||| |||||| ||||||||| ||||||| ||| |||||||||||||| |||||||||||||| |||| ||| ||||||||||| || ||||| |
|
|
| T |
17747753 |
gattatataattgcaggaatcaaattcatatccccttaacatatgggaacgtgctcaatgtctttcaagaccagcac---tcttgtgcaatgttgaagag |
17747657 |
T |
|
| Q |
183 |
attatactgatgaatatttcgaagatgaaatcagtattcatcctatc |
229 |
Q |
| |
|
|||| | ||| |||| |||| ||||||||||| ||||| |||||||| |
|
|
| T |
17747656 |
attacattgaagaatgtttcaaagatgaaatcggtatttatcctatc |
17747610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 83 - 229
Target Start/End: Complemental strand, 19049073 - 19048930
Alignment:
| Q |
83 |
gattacataattacaggaatcagattcatactgtcttcccatatgggaacgtgttcaatgtctttcaataccatcacatatcttgtgcaatattaaagag |
182 |
Q |
| |
|
||||| |||||| ||||||||| ||||||| ||| |||||||||||||| |||||||||||||| |||| ||| ||||||||||| || ||||| |
|
|
| T |
19049073 |
gattatataattgcaggaatcaaattcatatccccttaacatatgggaacgtgctcaatgtctttcaagaccagcac---tcttgtgcaatgttgaagag |
19048977 |
T |
|
| Q |
183 |
attatactgatgaatatttcgaagatgaaatcagtattcatcctatc |
229 |
Q |
| |
|
|||| | ||| |||| |||| ||||||||||| ||||| |||||||| |
|
|
| T |
19048976 |
attacattgaagaatgtttcaaagatgaaatcggtatttatcctatc |
19048930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 115 - 304
Target Start/End: Complemental strand, 27434288 - 27434099
Alignment:
| Q |
115 |
gtcttcccatatgggaacgtgttcaatgtctttcaataccatcacatatcttgtgcaatattaaagagattatactgatgaatatttcgaagatgaaatc |
214 |
Q |
| |
|
|||||| |||||||||| ||||| ||||||| |||||| |||| ||| |||||||||| |||||||||||| ||| || ||| | ||| || || |
|
|
| T |
27434288 |
gtcttctcatatgggaatatgttccatgtcttccaatacaatcatatagcttgtgcaatgttaaagagattaatctgtctcattttttggcgataaagtc |
27434189 |
T |
|
| Q |
215 |
agtattcatcctatccattgcttcaagaatgttgttggagactttgacaatcagtaagtgtgatgagttgaagcacatcataatagacat |
304 |
Q |
| |
|
|| || || ||||| ||| | |||||||||||||||| ||||||||||| | || ||||||||||||||| |||| ||||||||||| |
|
|
| T |
27434188 |
ggtgtttattctatctattacaccaagaatgttgttggaaactttgacaattaagaactgtgatgagttgaagaacataataatagacat |
27434099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 75 - 163
Target Start/End: Complemental strand, 28491416 - 28491328
Alignment:
| Q |
75 |
tttatttggattacataattacaggaatcagattcatactgtcttcccatatgggaacgtgttcaatgtctttcaataccatcacatat |
163 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||| ||| |||||||||||||| |||||||||||||| || ||||||||| |
|
|
| T |
28491416 |
tttatttggattacataattgcaggaatcaaattcatatccccttaacatatgggaacgtgctcaatgtctttcaagacaatcacatat |
28491328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 248
Target Start/End: Complemental strand, 26211470 - 26211318
Alignment:
| Q |
96 |
caggaatcagattcatactgtcttcccatatgggaacgtgttcaatgtctttcaataccatcacatatcttgtgcaatattaaagagattatactgatga |
195 |
Q |
| |
|
||||||||| ||||| | || ||| |||||||||||||| |||||||||| || || |||||||||| ||||||||| |||||||||| | | | |
|
|
| T |
26211470 |
caggaatcaaattcacattgccttgacatatgggaacgtgctcaatgtcttctaagacaatcacatatcctgtgcaatactaaagagattgaaatctgta |
26211371 |
T |
|
| Q |
196 |
atatttcgaagatgaaatcagtattcatcctatccattgcttcaagaatgttg |
248 |
Q |
| |
|
|| || ||||||| ||||| ||||| |||| ||| |||||| ||||||||||| |
|
|
| T |
26211370 |
attttccgaagattaaatctgtatttatccaatctattgctccaagaatgttg |
26211318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 28049081 - 28049123
Alignment:
| Q |
48 |
aaactaacagattatttaacttatatttttatttggattacat |
90 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
28049081 |
aaactaagagattatttaacttatatttttatttggatgacat |
28049123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 126 - 303
Target Start/End: Original strand, 24549 - 24726
Alignment:
| Q |
126 |
tgggaacgtgttcaatgtctttcaataccatcacatatcttgtgcaatattaaagagattatactgatgaatatttcgaagatgaaatcagtattcatcc |
225 |
Q |
| |
|
||||||||||||||||||||| |||||| |||| | | |||||||||||||||||||| || || |||||| |||||| |||||||| || |||| |
|
|
| T |
24549 |
tgggaacgtgttcaatgtcttccaatacaatcatacagaatgtgcaatattaaagagattgtattgtgtcatattttgaagataaaatcagtgtttatcc |
24648 |
T |
|
| Q |
226 |
tatccattgcttcaagaatgttgttggagactttgacaatcagtaagtgtgatgagttgaagcacatcataatagaca |
303 |
Q |
| |
|
|||| ||| | ||| |||||||||||| ||||||||||| | || ||||||||||| ||| |||| ||| |||||| |
|
|
| T |
24649 |
tatcaattacaccaaaaatgttgttggaaactttgacaattaagaactgtgatgagttaaagaacataatattagaca |
24726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 71034 - 70977
Alignment:
| Q |
124 |
tatgggaacgtgttcaatgtctttcaataccatcacatatcttgtgcaatattaaagagat |
184 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||| |||||||||||||| |||| |
|
|
| T |
71034 |
tatgggaacgtgctcaatgtctttcaa---aatcacatatcatgtgcaatattaaaaagat |
70977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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