View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12775_high_2 (Length: 319)
Name: NF12775_high_2
Description: NF12775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12775_high_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 6 - 319
Target Start/End: Original strand, 34166830 - 34167143
Alignment:
| Q |
6 |
agagagatgaacagagaatgcaagagtctggaacttttggctctacactgggagagtatgtccaacttacgaatttttagctaattaaactttccaatga |
105 |
Q |
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| T |
34166830 |
agagagaagaacagagaatgcaagagtctggaacttttagctctacactgggagagtatgtccaacttatgaatttttagctaattaaactttccaatga |
34166929 |
T |
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| Q |
106 |
cgtaatttatttcttgagtgaaattagaaggttgtcgtgatcctactagagaaatggactnnnnnnnngcttataaagggtagacaatcctcagcattta |
205 |
Q |
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| T |
34166930 |
cgtaatttatttcttgagtgaaattagaaggttgtcgtgatcctactagagaaatggactaaaaaaaagcttataaagggtagacaatcctcagcattta |
34167029 |
T |
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| Q |
206 |
agccagtttgtcggggacgacttagactcaaacctaggatgatattataacctgataaatgtgnnnnnnnnacccatcagtaaaggtacaaactaaaatg |
305 |
Q |
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| T |
34167030 |
agccagtttgtcggggacgacttagactcaaacctaggatgatattataacctgataaatgtgttttttttacccatcagtaaaggtacaaactaaaatg |
34167129 |
T |
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| Q |
306 |
ttgcgtcctaggca |
319 |
Q |
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|||||||||||||| |
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| T |
34167130 |
ttgcgtcctaggca |
34167143 |
T |
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