View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12776_high_15 (Length: 295)
Name: NF12776_high_15
Description: NF12776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12776_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 86 - 280
Target Start/End: Original strand, 43091052 - 43091246
Alignment:
| Q |
86 |
aactccctaaatcaaagaaacagtttgtgattgtgtgactcgtaaaaagaaatcgaataattcatctttctttcttctgaatatggttctgttactttta |
185 |
Q |
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| T |
43091052 |
aactccctaaatcaaagaaaaagtttgtgattgtgtgactcgtaaaaagaaatcgaataattcatctttctttcttctgaatatggttctgttactttta |
43091151 |
T |
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| Q |
186 |
tgcattaaagctgaaccaataaaagatagctttttagatgaatcaacattgttcctttttccatctccaacaccctactactacctaatacatac |
280 |
Q |
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| T |
43091152 |
tgcattaaagctgaaccaataaaagatagctttttagatgaatcaacattgttcctttttccatctccaacaccctactactacctaatacatac |
43091246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 43090932 - 43090992
Alignment:
| Q |
25 |
ttatagttataacaaatatatcaacttcttcttctgctaaatttcttcaatgtgtgtgtat |
85 |
Q |
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| T |
43090932 |
ttatagttataacaaatatatcaacttcttcttctgctaaatttcttcaatgtgtgtgtat |
43090992 |
T |
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