View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12776_low_10 (Length: 392)
Name: NF12776_low_10
Description: NF12776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12776_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 11 - 374
Target Start/End: Complemental strand, 33691552 - 33691189
Alignment:
| Q |
11 |
cagagattaaaaagtcaggacaaacccaaggtagcagtcgagatagttaattgtcttgaaaatgacattaatcatgatgtgacgtatttgactcggaggg |
110 |
Q |
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| T |
33691552 |
cagagattaaaaagtcaggacaaacccaaggtagcagtcgagatagttaattgtcttgaaaatgacattaatcatgatgtgacgtatttgactaggaggg |
33691453 |
T |
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| Q |
111 |
tggtgcagttggaggcgtgaaggagaatttggtgcatcaaattataactcccaaattttcatcatattatttttaagccttaagacattaattctttgca |
210 |
Q |
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| T |
33691452 |
tggtgcagttggaggcgtgaaggagaatttggtgcatcaaattataactcccaaattttcatcaaattatttttaagccttaagacattaattctttgca |
33691353 |
T |
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| Q |
211 |
cggttgagaaaccttcaatggcgtttgttgaacatttgtctttgtgcattttgttctgtagcatattttcttagtcatagtatactcctacattttatat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33691352 |
cggttgagaaaccttcaatggcgtttgttgaacatttgtctttgtgcattttgttctgtagcatattttcttagtcatagtatactcctacattttatat |
33691253 |
T |
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| Q |
311 |
gtactcgatacagattgaagtaaaaggttaacgcgtggtacaacaaattaagtaaatgtttttg |
374 |
Q |
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| T |
33691252 |
gtactcgatacagattgaagtaaaaggttaacgcgtagtacaacaaattaagtaaatgtttttg |
33691189 |
T |
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