View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12776_low_11 (Length: 380)
Name: NF12776_low_11
Description: NF12776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12776_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 16 - 369
Target Start/End: Complemental strand, 6073674 - 6073321
Alignment:
| Q |
16 |
caaatccggcctcaccttccgtgacttccatctcctccgccgtataggcgccggcgacataggcaccgtttacctctgtcgcctccgtgactcctccgca |
115 |
Q |
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| T |
6073674 |
caaatccggcctcaccttccgtgacttccatctcctccgccgtataggcgccggcgacataggcaccgtttacctctgtcgcctccgtgactcctcctca |
6073575 |
T |
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| Q |
116 |
aatgaactcctttacgatgataacacttccttctacgccatgaaggttgttgataaggacgctgttgctcttaagaaaaagtctcatagagcggaaatgg |
215 |
Q |
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| T |
6073574 |
aatgaactcctttacgatgataacacttccttctacgccatgaaggttgttgataaggacgctgttgctcttaagaaaaagtctcatagagcggaaatgg |
6073475 |
T |
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| Q |
216 |
agagaaagatacttaagatgcttgatcatccttttcttcctagtctctatgctgagtttgaagcttctcatttctcttgcattgttatggagttttgttc |
315 |
Q |
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| T |
6073474 |
agagaaagatacttaagatgcttgatcatccttttcttcctagtctctatgctgagtttgaagcttctcatttctcttgcattgttatggagttttgttc |
6073375 |
T |
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| Q |
316 |
cggtggagatttgcactctctccgtcaccgccaccatcgtaaccgcttctctct |
369 |
Q |
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| T |
6073374 |
cggtggagatttgcactctctccgtcaccgccaccatcgtaaccgcttctctct |
6073321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 134 - 330
Target Start/End: Original strand, 37170216 - 37170412
Alignment:
| Q |
134 |
gataacacttccttctacgccatgaaggttgttgataaggacgctgttgctcttaagaaaaagtctcatagagcggaaatggagagaaagatacttaaga |
233 |
Q |
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| T |
37170216 |
gataacacttgtttgtatgcgatgaaggttgtggataaagacgttgttgcattaaagaagaaatcacatagagctgaaatggagagaaagattctgaaaa |
37170315 |
T |
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| Q |
234 |
tgcttgatcatccttttcttcctagtctctatgctgagtttgaagcttctcatttctcttgcattgttatggagttttgttccggtggagatttgca |
330 |
Q |
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| T |
37170316 |
tgcttgatcatccttttcttcctacactctacgctgagtttgaagcttctcatttctcttgcattgttatggagttttgttccggtggtgacttgca |
37170412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 37170108 - 37170181
Alignment:
| Q |
26 |
ctcaccttccgtgacttccatctcctccgccgtataggcgccggcgacataggcaccgtttacctctgtcgcct |
99 |
Q |
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| T |
37170108 |
ctcacatttcgtgacttccacctcctccgccgtatcggcgccggagatatcggtactgtttacctatgccgcct |
37170181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 232 - 328
Target Start/End: Original strand, 46833695 - 46833791
Alignment:
| Q |
232 |
gatgcttgatcatccttttcttcctagtctctatgctgagtttgaagcttctcatttctcttgcattgttatggagttttgttccggtggagatttg |
328 |
Q |
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||||||||||||||||||| | |||| | | ||| |||| ||||| |||||||||| |||||| | ||||||||||||||| | ||||| |||||| |
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| T |
46833695 |
gatgcttgatcatccttttttacctactttgtatactgattttgatgcttctcattactcttgtttggttatggagttttgtcctggtggtgatttg |
46833791 |
T |
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