View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12776_low_12 (Length: 366)
Name: NF12776_low_12
Description: NF12776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12776_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 11 - 353
Target Start/End: Original strand, 39410685 - 39411014
Alignment:
| Q |
11 |
cataggtccttgaagcatcccaatatcattagatttaaagaggtaataaccnnnnnnnngtgtgtgttcttgtgattattttctccgtaccgtattgttt |
110 |
Q |
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| T |
39410685 |
cataggtccttgaagcatcccaatatcattagatttaaagaggtaataaac-----------tttttttttgtg--tgtgttctccgtaccgtattgttt |
39410771 |
T |
|
| Q |
111 |
gtgagttgtgacctcactgttaaagattaagagtttgactttgtaacttcatgtacgagttcaaaatatacatgaaacaattttaaaattgtcaataatg |
210 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39410772 |
gtgagttgtgacctcactgttaaagattaaaagtttgactttgtaacttcatgtacgagttcaaaatatacatgaaacaattttaaaattgtcaataatg |
39410871 |
T |
|
| Q |
211 |
tcacctttcttttctcgattagatggagcttgtcagttttatctttaaattgtaatattaattattgtaattaagataaagtttccattgatggcaggtt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
39410872 |
tcacctttcttttctcgattagatggagcttgtcagttttatctttaaattgtaatattaattattgtgattaagataaagtttccactgatggcaggtt |
39410971 |
T |
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| Q |
311 |
ctatgtactccagctcatctagctatagtgatggagtatgctg |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39410972 |
ctatgtactccagctcatctagctatagtgatggagtatgctg |
39411014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 37601900 - 37601944
Alignment:
| Q |
11 |
cataggtccttgaagcatcccaatatcattagatttaaagaggta |
55 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
37601900 |
cataggtcattgaagcatcccaatattgttagatttaaagaggta |
37601944 |
T |
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