View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12776_low_13 (Length: 299)
Name: NF12776_low_13
Description: NF12776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12776_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 41740180 - 41740465
Alignment:
| Q |
1 |
aaagtgatgctgttgctatgtagactcctatccatggcattggcttgctgaaatttgtgtcatctaagtgtccttcactgttgcacatgttttttgccat |
100 |
Q |
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| T |
41740180 |
aaagtgatgctgttgctatgtagactcctatccatggcattggcttgctgaaatttgtgtcatctaagtgtccttcactgttgcacatgttttttgccat |
41740279 |
T |
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| Q |
101 |
ctttattcttcaatgcttctgctgcaaaacgattaatgttgttacttgtttaggaaaaatgtttgtgtttctagccacatgttcttttttccaagttata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41740280 |
ctttattcttcaatgcttctgctgcaaaacgattaatgttgttacttgtttaggaaaaatgtttgtgtttctagccacatgttcttttttccaagttata |
41740379 |
T |
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| Q |
201 |
tagaccacaatatagtaatag--taataagatttctatgtggaattattaagggttgtaaatatgattatgttgtgatgtattcat |
284 |
Q |
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| T |
41740380 |
tagaccacaatatagtaatagtataataagatttttatgtggaattattaagggttgtaaatatgattatgttgtgatgtattcat |
41740465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 41745580 - 41745461
Alignment:
| Q |
1 |
aaagtgatgctgttgctatgtagactcctatccatggcattggcttgctgaaatttgtgtcatctaagtgtccttcactgttgcacatgttttttgccat |
100 |
Q |
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|||||||||||||||||||||||| ||| |||||||||||||| |||||||| | || || ||||| |||||||||||||||||||| ||||||| ||| |
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| T |
41745580 |
aaagtgatgctgttgctatgtagattccaatccatggcattggtttgctgaattgtgcatcgtctaactgtccttcactgttgcacatattttttgtcat |
41745481 |
T |
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| Q |
101 |
ctttattcttcaatgcttct |
120 |
Q |
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| | |||||||| ||||||| |
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| T |
41745480 |
cctcattcttcactgcttct |
41745461 |
T |
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