View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12776_low_3 (Length: 574)
Name: NF12776_low_3
Description: NF12776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12776_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 101 - 564
Target Start/End: Complemental strand, 51574274 - 51573811
Alignment:
| Q |
101 |
ctcttcctctttggtcttaatttccttagtagatttatcaannnnnnngcgtaagagtctcgagctcctcttccttccaccatctttattgttgttagcc |
200 |
Q |
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| T |
51574274 |
ctcttcctctttggtcttaatttccttagtagatttatcaacttttttgcgtaagagtctcgagctcctcttccttccaccatctttattgttgttagcc |
51574175 |
T |
|
| Q |
201 |
tcaattttacgaagttctatctcatttttcttgagctcatgcttgtaatttttaatcaactcctcaattaaacacaccggtgcttccttttcttcaagat |
300 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51574174 |
tcgattttacgaagttctatctcatttttcttgagctcatgcttgtaatttttaatcaactcctcaattaaacacaccggtgcttccttttcttcaagat |
51574075 |
T |
|
| Q |
301 |
ctttaacacatttttcaattttactctgcattttagtgtaatattgactaattcttctgacacaaccaacctgctttttcttgtttagaagctcgttgga |
400 |
Q |
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| T |
51574074 |
ctttaacacatttttcaattttactctgcattttagtgtaatattgactaattcttctgacacaaccaacctgctttttcttgtttagaagctcgttgga |
51573975 |
T |
|
| Q |
401 |
gcgctccttaacatctctctcaagggattgcaattttagctcctccacattcttcattctttcgcagttcctgatcaaaatttcaaccatatcaaatcct |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
51573974 |
acgctccttaacatctctctcaagggattgcaattttagctcctccacattcttcattctttcgcagttcctgatcaaaatttcaaccatatcaaattct |
51573875 |
T |
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| Q |
501 |
ctctttatgtgattcatcctcacagaaaatggcctatcgaccaacctcctcacatacacctttg |
564 |
Q |
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| T |
51573874 |
ctctttatgtgattcatcctcacagaaaatggcctatcgaccaacctcctcacatacacctttg |
51573811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 51576247 - 51576171
Alignment:
| Q |
17 |
aaattttatgtgtcaaacccatcattccaaacagctctacttctattttgtgctgagcaacaaatccaaaatacttc |
93 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
51576247 |
aaattttatgtgtcaaacccatcattccaaacagctctactgctattttgtgctgagcaacaaatccaaaatacttc |
51576171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 372 - 437
Target Start/End: Complemental strand, 2360990 - 2360925
Alignment:
| Q |
372 |
tgctttttcttgtttagaagctcgttggagcgctccttaacatctctctcaagggattgcaatttt |
437 |
Q |
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| T |
2360990 |
tgctttttcttatttagaagctctttggagcactcctcaatatctctctcaagggattgcaatttt |
2360925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 435
Target Start/End: Complemental strand, 33151064 - 33151001
Alignment:
| Q |
372 |
tgctttttcttgtttagaagctcgttggagcgctccttaacatctctctcaagggattgcaatt |
435 |
Q |
| |
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||||||||||| ||||||||||| ||||||| || || || ||||||||| ||||| ||||||| |
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| T |
33151064 |
tgctttttcttttttagaagctctttggagcactgctcaatatctctctctagggagtgcaatt |
33151001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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