View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12776_low_4 (Length: 496)
Name: NF12776_low_4
Description: NF12776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12776_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 198 - 489
Target Start/End: Complemental strand, 7904436 - 7904145
Alignment:
| Q |
198 |
gccgccctccatcgagcctcaataacatcgactgtttctctagatccacctcgaatcaaattttaattttaaaatgattattatttcaaaataaaacata |
297 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7904436 |
gccgccctccatcgagcttcaataacatcgactgtttctctagatccacctcgaatcaaattttaattttaaaatgattattatttcaaaataaaacata |
7904337 |
T |
|
| Q |
298 |
tatattatgttcaatggagaaattctttacttcataaattcatttattatgtcctctcnnnnnnnnnnnnnnnncattaattatgtgaatagggtttcct |
397 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7904336 |
tatattatgttcaatggagaaattttttacttcataagttcatttattatgtcctctcaaaacaaaataaaaaacattaattatgtgaatagggtttcct |
7904237 |
T |
|
| Q |
398 |
aatttccaactagtcaaaaaaggtgtattttgtcttgttcaaaaaagtttattttgtcgtgtagattgaaaagtcgtgcttttttcttctct |
489 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7904236 |
aatttccaactagtcaaaaaaggggtattttgtcttgttcaaaaaagtttattttgtcgtgtagattgaaaagtcgtgcttttttcttctct |
7904145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 7904644 - 7904466
Alignment:
| Q |
20 |
cgaggcgcatgggttatgtgtttctaggggtttttgcttctgccatgtacgcgaggcacaccccgtgcgaggaccatgacttgtataatgacctactcgc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7904644 |
cgaggcgcatgggttatgtgtttctaggggtttttgcttctgccatgtacgcgaggcacaccccgtgcgaggaccatgacttgtataatgacctactcgc |
7904545 |
T |
|
| Q |
120 |
tcaaaagaaaggtagttgttattctcattgtctcatactcacttcaatctcccactaacttaagcggtatgagtggttgc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7904544 |
tcaaaagaaaggtagttgttattctcattgtctcatactcgcttcaatctcccactaacttaagc-gtatgagtggttgc |
7904466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University