View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12776_low_5 (Length: 469)
Name: NF12776_low_5
Description: NF12776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12776_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Original strand, 53803633 - 53804086
Alignment:
| Q |
1 |
aaatcatattcgagacatggtcggatactaaatattgacacttcttccagctagaattcaaataattgttagaaactagccatttctactagattcaact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
53803633 |
aaatcatattcgagacatggtcggatactaaatattgacacttcttccagctagaattcaaatagttgtaagaaactagccatttctactagattcaact |
53803732 |
T |
|
| Q |
101 |
tcaattaatcatttgtcaatcatttcataataagtggtgaacaatagcaaaacatttatgatttaagatcaatactatacctaccaagtaccaactaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53803733 |
tcaattaatcatttgtcaatcatttcataataagtggtgaacaatagcaaaacatttatgatttaagatcaatactatacctaccaagtaccaactaact |
53803832 |
T |
|
| Q |
201 |
acataggttcaaaaaattaaacatggatttatttacaagaaacaaagttatgacttacatgagaataaacctgctaatctgcggccaaagctcttcttcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53803833 |
acataggttcaaaaaattaaacatggatttatttacaagaaacaaagttatgacttacatgagaataaacctgctaatctgcggccaaagctcttcttcc |
53803932 |
T |
|
| Q |
301 |
gtcaatttactaatagagttagatatcttgtcaactacttggatagaaactttcatttttgtaactaaaatactgatgaaagcttttatggaattaattt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53803933 |
gtcaatttactaatagagttagatatcttgtcaactacttggatagaaactttcatttttgtaactaaaatactgatgaaagcttttatggaattaattt |
53804032 |
T |
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| Q |
401 |
tttgtgcatcagcatcctttttattcatacgtctcaactgcttacacttcttct |
454 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53804033 |
tttgtgcatcagcatcctttttattcatacgtctcaactgcttacacttcttct |
53804086 |
T |
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