View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12776_low_6 (Length: 438)

Name: NF12776_low_6
Description: NF12776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12776_low_6
NF12776_low_6
[»] chr7 (27 HSPs)
chr7 (237-419)||(28548259-28548452)
chr7 (12-171)||(28548034-28548194)
chr7 (105-172)||(2600426-2600494)
chr7 (105-172)||(37970044-37970112)
chr7 (105-172)||(640503-640571)
chr7 (105-171)||(47379672-47379739)
chr7 (243-276)||(15564905-15564938)
chr7 (105-172)||(11070339-11070407)
chr7 (105-172)||(27704546-27704614)
chr7 (105-152)||(27943088-27943136)
chr7 (237-277)||(41538475-41538515)
chr7 (105-171)||(384663-384730)
chr7 (237-280)||(21589923-21589966)
chr7 (237-272)||(27704433-27704468)
chr7 (237-280)||(33465066-33465109)
chr7 (105-155)||(36108300-36108350)
chr7 (102-155)||(41458789-41458843)
chr7 (244-274)||(42276087-42276117)
chr7 (237-270)||(30538626-30538659)
chr7 (237-274)||(36108168-36108205)
chr7 (237-270)||(37969931-37969964)
chr7 (237-270)||(40207838-40207871)
chr7 (244-272)||(23389638-23389666)
chr7 (105-172)||(24380613-24380681)
chr7 (105-172)||(47945094-47945162)
chr7 (105-172)||(47950524-47950592)
chr7 (237-273)||(48522153-48522189)
[»] chr3 (37 HSPs)
chr3 (105-172)||(2280288-2280356)
chr3 (102-172)||(10565163-10565233)
chr3 (107-172)||(50025579-50025645)
chr3 (105-172)||(16295575-16295643)
chr3 (105-172)||(29533872-29533940)
chr3 (105-171)||(38471754-38471821)
chr3 (102-171)||(32152005-32152075)
chr3 (105-169)||(884651-884716)
chr3 (105-171)||(1261267-1261334)
chr3 (105-171)||(14847410-14847477)
chr3 (107-171)||(33971995-33972060)
chr3 (237-277)||(29846918-29846958)
chr3 (105-172)||(33074984-33075052)
chr3 (105-171)||(9557824-9557891)
chr3 (237-268)||(25595942-25595973)
chr3 (107-169)||(27276848-27276911)
chr3 (102-164)||(42643356-42643419)
chr3 (107-172)||(9027724-9027790)
chr3 (237-271)||(35368621-35368655)
chr3 (105-171)||(36301102-36301167)
chr3 (107-172)||(43149237-43149303)
chr3 (244-274)||(53021185-53021215)
chr3 (243-272)||(884532-884561)
chr3 (243-272)||(7867755-7867784)
chr3 (245-274)||(28920096-28920125)
chr3 (107-155)||(47140569-47140618)
chr3 (240-273)||(50025739-50025772)
chr3 (243-276)||(52564678-52564711)
chr3 (105-172)||(14838937-14839005)
chr3 (102-169)||(25559818-25559886)
chr3 (237-273)||(27276884-27276920)
chr3 (105-168)||(29555733-29555797)
chr3 (244-276)||(30592331-30592363)
chr3 (237-273)||(38471639-38471675)
chr3 (244-272)||(40159883-40159911)
chr3 (244-272)||(45528987-45529015)
chr3 (244-272)||(50559257-50559285)
[»] chr1 (37 HSPs)
chr1 (105-172)||(46903581-46903649)
chr1 (109-172)||(31666102-31666166)
chr1 (105-172)||(40053017-40053085)
chr1 (105-172)||(2827602-2827670)
chr1 (105-172)||(49615167-49615235)
chr1 (105-171)||(37741844-37741911)
chr1 (105-164)||(27787608-27787668)
chr1 (105-172)||(28457239-28457307)
chr1 (105-171)||(21446110-21446177)
chr1 (105-171)||(24158762-24158829)
chr1 (112-171)||(51436331-51436390)
chr1 (237-270)||(41425242-41425275)
chr1 (105-164)||(644815-644875)
chr1 (105-164)||(8312264-8312324)
chr1 (105-172)||(23399881-23399949)
chr1 (243-275)||(26585217-26585249)
chr1 (105-172)||(29638826-29638894)
chr1 (105-172)||(41564772-41564840)
chr1 (105-171)||(6396439-6396506)
chr1 (237-272)||(21854502-21854537)
chr1 (105-171)||(43757698-43757765)
chr1 (109-172)||(44714352-44714418)
chr1 (244-278)||(11947787-11947821)
chr1 (237-271)||(22674711-22674745)
chr1 (107-172)||(48962097-48962163)
chr1 (105-134)||(11038406-11038435)
chr1 (243-272)||(18610771-18610800)
chr1 (105-154)||(19427645-19427694)
chr1 (237-270)||(22331366-22331399)
chr1 (237-274)||(30414871-30414908)
chr1 (237-273)||(1100214-1100250)
chr1 (237-273)||(10385424-10385460)
chr1 (243-279)||(13355102-13355138)
chr1 (244-272)||(23044916-23044944)
chr1 (237-273)||(26910429-26910465)
chr1 (243-275)||(27687552-27687584)
chr1 (244-272)||(45042259-45042287)
[»] chr2 (34 HSPs)
chr2 (107-172)||(9377652-9377718)
chr2 (105-172)||(11728013-11728081)
chr2 (106-172)||(25094463-25094530)
chr2 (105-171)||(40721883-40721950)
chr2 (105-172)||(34373119-34373187)
chr2 (106-172)||(304885-304952)
chr2 (102-172)||(37827674-37827745)
chr2 (105-171)||(43026048-43026115)
chr2 (105-161)||(38724209-38724266)
chr2 (105-172)||(27329001-27329069)
chr2 (105-162)||(24727523-24727581)
chr2 (107-172)||(35518386-35518452)
chr2 (105-172)||(1151640-1151708)
chr2 (105-172)||(4858224-4858292)
chr2 (105-172)||(34141554-34141622)
chr2 (244-279)||(3299150-3299185)
chr2 (102-172)||(13850073-13850144)
chr2 (107-172)||(8757655-8757721)
chr2 (237-274)||(6215271-6215308)
chr2 (244-277)||(8352828-8352861)
chr2 (237-274)||(12208438-12208475)
chr2 (237-270)||(24727426-24727459)
chr2 (244-277)||(28494852-28494885)
chr2 (107-171)||(28679239-28679304)
chr2 (243-275)||(5031918-5031950)
chr2 (243-271)||(10288149-10288177)
chr2 (105-172)||(12257012-12257080)
chr2 (243-271)||(14891122-14891150)
chr2 (244-272)||(18531599-18531627)
chr2 (105-172)||(23141465-23141533)
chr2 (105-172)||(23553255-23553323)
chr2 (105-172)||(30340105-30340173)
chr2 (237-273)||(30413764-30413800)
chr2 (244-272)||(40115524-40115552)
[»] scaffold0036 (1 HSPs)
scaffold0036 (105-172)||(54554-54622)
[»] chr8 (29 HSPs)
chr8 (105-172)||(45405727-45405795)
chr8 (105-172)||(5742549-5742617)
chr8 (105-171)||(38939084-38939151)
chr8 (105-172)||(28156314-28156382)
chr8 (105-171)||(32674124-32674191)
chr8 (107-169)||(34578231-34578294)
chr8 (107-171)||(42651032-42651097)
chr8 (105-172)||(25430757-25430825)
chr8 (237-273)||(28156200-28156236)
chr8 (105-172)||(28713204-28713272)
chr8 (105-172)||(28720551-28720619)
chr8 (105-172)||(28728193-28728261)
chr8 (237-272)||(3893436-3893471)
chr8 (107-169)||(18550093-18550156)
chr8 (106-172)||(33635686-33635753)
chr8 (102-172)||(34838159-34838230)
chr8 (243-274)||(36497657-36497688)
chr8 (237-271)||(5742695-5742729)
chr8 (244-278)||(12655914-12655948)
chr8 (12-58)||(25634111-25634157)
chr8 (237-274)||(22203253-22203290)
chr8 (243-276)||(39021487-39021520)
chr8 (237-270)||(41776186-41776219)
chr8 (245-273)||(6440078-6440106)
chr8 (244-272)||(14233678-14233706)
chr8 (240-272)||(32674273-32674305)
chr8 (244-276)||(34641539-34641571)
chr8 (237-273)||(35701865-35701901)
chr8 (240-284)||(40459803-40459847)
[»] chr5 (25 HSPs)
chr5 (105-172)||(3518294-3518362)
chr5 (105-172)||(10469839-10469907)
chr5 (105-169)||(34698890-34698954)
chr5 (105-170)||(35358827-35358893)
chr5 (105-172)||(8761758-8761826)
chr5 (105-172)||(37821033-37821101)
chr5 (107-172)||(12612911-12612977)
chr5 (107-172)||(43152954-43153020)
chr5 (105-172)||(31625968-31626036)
chr5 (105-172)||(35616693-35616761)
chr5 (105-172)||(1108109-1108181)
chr5 (237-272)||(24330020-24330055)
chr5 (237-272)||(38919861-38919896)
chr5 (237-271)||(41192586-41192620)
chr5 (237-274)||(3031830-3031867)
chr5 (120-172)||(5005224-5005277)
chr5 (237-274)||(18729327-18729364)
chr5 (243-280)||(36572681-36572718)
chr5 (244-272)||(5996665-5996693)
chr5 (243-271)||(14508201-14508229)
chr5 (244-272)||(19844354-19844382)
chr5 (244-272)||(29803223-29803251)
chr5 (244-272)||(34428158-34428186)
chr5 (244-272)||(35165677-35165705)
chr5 (105-172)||(39032496-39032564)
[»] chr4 (45 HSPs)
chr4 (105-172)||(30250190-30250258)
chr4 (105-172)||(37732060-37732128)
chr4 (105-159)||(55960824-55960879)
chr4 (105-172)||(1987605-1987673)
chr4 (105-172)||(6093497-6093565)
chr4 (105-172)||(9827877-9827945)
chr4 (105-172)||(46309015-46309083)
chr4 (105-155)||(26442280-26442331)
chr4 (237-275)||(29577474-29577512)
chr4 (237-271)||(43864033-43864067)
chr4 (107-171)||(4949128-4949193)
chr4 (237-270)||(4949272-4949305)
chr4 (244-277)||(42853932-42853965)
chr4 (243-279)||(53662472-53662508)
chr4 (243-274)||(6290458-6290489)
chr4 (244-275)||(12241053-12241084)
chr4 (237-272)||(26442428-26442463)
chr4 (237-272)||(31413813-31413848)
chr4 (243-274)||(33093148-33093179)
chr4 (105-155)||(34538058-34538109)
chr4 (237-276)||(45418061-45418100)
chr4 (241-272)||(54803370-54803401)
chr4 (102-171)||(21766659-21766729)
chr4 (237-271)||(31318752-31318786)
chr4 (240-270)||(36947133-36947163)
chr4 (243-277)||(39449166-39449200)
chr4 (243-272)||(940303-940332)
chr4 (237-270)||(36110134-36110167)
chr4 (237-270)||(36871195-36871228)
chr4 (237-274)||(41170769-41170806)
chr4 (243-272)||(42815402-42815431)
chr4 (237-270)||(43511685-43511718)
chr4 (244-273)||(50890118-50890147)
chr4 (243-276)||(53781880-53781913)
chr4 (237-273)||(1868920-1868956)
chr4 (105-172)||(18944396-18944464)
chr4 (244-272)||(33820381-33820409)
chr4 (243-271)||(35017152-35017180)
chr4 (105-172)||(36110245-36110313)
chr4 (243-271)||(40629384-40629412)
chr4 (244-272)||(44272855-44272883)
chr4 (105-149)||(45418197-45418241)
chr4 (105-152)||(46686356-46686404)
chr4 (243-271)||(47014938-47014966)
chr4 (105-172)||(50291393-50291461)
[»] chr6 (11 HSPs)
chr6 (105-172)||(34976727-34976795)
chr6 (12-67)||(24195381-24195436)
chr6 (102-171)||(3335347-3335417)
chr6 (102-172)||(608550-608621)
chr6 (244-279)||(9188989-9189024)
chr6 (237-270)||(9395364-9395397)
chr6 (244-277)||(16328735-16328768)
chr6 (244-277)||(16368092-16368125)
chr6 (243-272)||(27334856-27334885)
chr6 (243-272)||(27395596-27395625)
chr6 (237-273)||(28965878-28965914)
[»] scaffold0014 (1 HSPs)
scaffold0014 (105-172)||(145158-145226)
[»] scaffold0651 (1 HSPs)
scaffold0651 (237-271)||(4884-4918)
[»] scaffold0662 (1 HSPs)
scaffold0662 (243-271)||(1077-1105)
[»] scaffold0592 (1 HSPs)
scaffold0592 (109-172)||(1021-1085)


Alignment Details
Target: chr7 (Bit Score: 130; Significance: 3e-67; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 237 - 419
Target Start/End: Original strand, 28548259 - 28548452
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctcttaatttttt-gacacatgtcttacatccaaag---------agaatacctaga-tccaaatatgg 325  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||         || ||||| ||| |||||||||||    
T  28548259 ttgtaccaaaatagttgtacaaatatcatttctcttattttttttgacacatgtcttgcatccaaagcctaaatggagcatacccagactccaaatatgg 28548358  T
Q  326 agtataaaataatatatcatcaaccattgaagaagtattacttagtagaaaatcactattgtgaagaccttttgcactaataagaataacttca 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28548359 agtataaaataatatatcatcaaccattgaagaagtattacttagtagaaaatcactattgtgaagaccttttgcactaataagaataacttca 28548452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 12 - 171
Target Start/End: Original strand, 28548034 - 28548194
Alignment:
Q  12 gagaagaagaatgagattgcatgaattggggaagatgggaggtgaatgctgtttttaaaattttaaatctccgcccttcattannnnnnnagcagtgata 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||    
T  28548034 gagaagaagaatgagattgcatgaattggggaagatgggaggtgaatgctgtttttaaaattttaaatctccgcccttcattatttttttagcagtgata 28548133  T
Q  112 ttttaacaaccattttggtacaatc-ttgagacaactttgttgttttctcttcttattggt 171  Q
    |||||||||||||||| |||||||| ||||||||||||| ||||| |||||||||||||||    
T  28548134 ttttaacaaccattttagtacaatctttgagacaactttattgttctctcttcttattggt 28548194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 2600426 - 2600494
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattggtc 172  Q
    ||||||||||| |||||||||||||||||| ||| ||||||||||||||||| |||||||| |||||||    
T  2600426 agtgatattttgacaaccattttggtacaacctttgagacaactttgttgttctctcttctcattggtc 2600494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 37970112 - 37970044
Alignment:
Q  105 agtgatattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttcttattggtc 172  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||||||| |||||||| |||||||    
T  37970112 agtgatattttaacaaccattttggtacaacatttgagacaactttgttgttctctcttctcattggtc 37970044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 640571 - 640503
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattggtc 172  Q
    ||||||||||| |||| |||||||||| |||||| ||||||||||||||||| |||||||| |||||||    
T  640571 agtgatattttgacaatcattttggtataatctttgagacaactttgttgttctctcttctcattggtc 640503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 47379739 - 47379672
Alignment:
Q  105 agtgatattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttcttattggt 171  Q
    ||||||||||| ||||| |||||||| ||| | ||||||||||||||||||| |||||||| ||||||    
T  47379739 agtgatattttgacaactattttggtgcaacttttgagacaactttgttgttctctcttctcattggt 47379672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 243 - 276
Target Start/End: Complemental strand, 15564938 - 15564905
Alignment:
Q  243 caaaatagttgtacaaatatcatttctcttaatt 276  Q
    ||||||||||||||||||||||||||||||||||    
T  15564938 caaaatagttgtacaaatatcatttctcttaatt 15564905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 11070407 - 11070339
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatc-ttgagacaactttgttgttttctcttcttattggtc 172  Q
    ||||||||||| |||| |||||||||| |||| |||||||||||||||| || |||||| | |||||||    
T  11070407 agtgatattttgacaatcattttggtagaatctttgagacaactttgttcttctctcttttcattggtc 11070339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 27704614 - 27704546
Alignment:
Q  105 agtgatattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||||| ||||||  ||||| ||||| | ||| |||||||||||||| |||||||||||||||||    
T  27704614 agtgatatttgaacaactcttttgttacaacttttgggacaactttgttgtgttctcttcttattggtc 27704546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 152
Target Start/End: Complemental strand, 27943136 - 27943088
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatc-ttgagacaactttgtt 152  Q
    |||||||||||||||| ||||||||||||||| ||||||||| ||||||    
T  27943136 agtgatattttaacaatcattttggtacaatctttgagacaattttgtt 27943088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 277
Target Start/End: Complemental strand, 41538515 - 41538475
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctcttaattt 277  Q
    |||||| ||||| ||||||||||||||||||||||||||||    
T  41538515 ttgtacaaaaatggttgtacaaatatcatttctcttaattt 41538475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 384730 - 384663
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattggt 171  Q
    ||||||||||||| || ||||||| ||||| ||| |||||||||||||| || |||||||| ||||||    
T  384730 agtgatattttaaaaatcattttgatacaacctttgagacaactttgttattctctcttctcattggt 384663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 280
Target Start/End: Complemental strand, 21589966 - 21589923
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctcttaatttttt 280  Q
    |||||| |||||| ||||||| ||||||||||||||||||||||    
T  21589966 ttgtacaaaaataattgtacagatatcatttctcttaatttttt 21589923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 272
Target Start/End: Complemental strand, 27704468 - 27704433
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctctt 272  Q
    |||||| |||||||||||||||||||||||||||||    
T  27704468 ttgtacaaaaatagttgtacaaatatcatttctctt 27704433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 280
Target Start/End: Original strand, 33465066 - 33465109
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctcttaatttttt 280  Q
    |||||| ||||| ||||||||||||||||||||| |||||||||    
T  33465066 ttgtacaaaaatggttgtacaaatatcatttctcataatttttt 33465109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 36108350 - 36108300
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatcttgagacaactttgttgtt 155  Q
    ||||||||||||||||| |||||||||||   ||||||||||||| |||||    
T  36108350 agtgatattttaacaactattttggtacacctttgagacaactttattgtt 36108300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 155
Target Start/End: Original strand, 41458789 - 41458843
Alignment:
Q  102 agcagtgatattttaacaaccattttggtacaa-tcttgagacaactttgttgtt 155  Q
    |||| ||||||||| |||| ||||||||||||| | |||||||||||||||||||    
T  41458789 agcaatgatattttgacaatcattttggtacaacttttgagacaactttgttgtt 41458843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 274
Target Start/End: Complemental strand, 42276117 - 42276087
Alignment:
Q  244 aaaatagttgtacaaatatcatttctcttaa 274  Q
    |||||||||||||||||||||||||||||||    
T  42276117 aaaatagttgtacaaatatcatttctcttaa 42276087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 270
Target Start/End: Complemental strand, 30538659 - 30538626
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctc 270  Q
    |||||||||||| |||||||||||||||||||||    
T  30538659 ttgtaccaaaattgttgtacaaatatcatttctc 30538626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 274
Target Start/End: Complemental strand, 36108205 - 36108168
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctcttaa 274  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  36108205 ttgtatcaaaatggttgtacaaatatcatttctcttaa 36108168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 270
Target Start/End: Complemental strand, 37969964 - 37969931
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctc 270  Q
    ||||| ||||||||||||||||||||||||||||    
T  37969964 ttgtatcaaaatagttgtacaaatatcatttctc 37969931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 270
Target Start/End: Original strand, 40207838 - 40207871
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctc 270  Q
    |||||| |||||||||||||||||||||||||||    
T  40207838 ttgtacaaaaatagttgtacaaatatcatttctc 40207871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 23389638 - 23389666
Alignment:
Q  244 aaaatagttgtacaaatatcatttctctt 272  Q
    |||||||||||||||||||||||||||||    
T  23389638 aaaatagttgtacaaatatcatttctctt 23389666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 24380613 - 24380681
Alignment:
Q  105 agtgatattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||||| ||||||  ||||||||||| | |||  ||||| ||||||| |||||||||||||||||    
T  24380613 agtgatatttgaacaactcttttggtacaacttttggaacaaccttgttgtgttctcttcttattggtc 24380681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 47945162 - 47945094
Alignment:
Q  105 agtgatattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||||| ||||||  ||||| ||||| | ||| |||||| ||||||| |||||||||||||||||    
T  47945162 agtgatatttgaacaactcttttgatacaacttttgggacaaccttgttgtgttctcttcttattggtc 47945094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 47950592 - 47950524
Alignment:
Q  105 agtgatattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||||| ||||||  ||||| ||||| | ||| |||||| ||||||| |||||||||||||||||    
T  47950592 agtgatatttgaacaactcttttgatacaacttttgggacaaccttgttgtgttctcttcttattggtc 47950524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 48522189 - 48522153
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctctta 273  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  48522189 ttgtacaaaaatggttgtacaaatatcatttctctta 48522153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 2280356 - 2280288
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatc-ttgagacaactttgttgttttctcttcttattggtc 172  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||    
T  2280356 agtgatattttgacaaccattttggtacaatctttgagacaactttgttgttctctcttctcattggtc 2280288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 10565233 - 10565163
Alignment:
Q  102 agcagtgatattttaacaaccattttggtacaatcttgagacaactttgttgttttctcttcttattggtc 172  Q
    ||||||||||||||||||||||||||||||||   ||||||||||||| ||||| ||| || |||||||||    
T  10565233 agcagtgatattttaacaaccattttggtacacctttgagacaactttattgttctctatttttattggtc 10565163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 107 - 172
Target Start/End: Original strand, 50025579 - 50025645
Alignment:
Q  107 tgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattggtc 172  Q
    ||||||||| |||||||||||||||||| ||| ||||||||||||||||| |||||||| |||||||    
T  50025579 tgatattttcacaaccattttggtacaacctttgagacaactttgttgttctctcttctcattggtc 50025645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 16295643 - 16295575
Alignment:
Q  105 agtgatattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttcttattggtc 172  Q
    ||||||||||| ||||| |||||||||||| | ||||||||||||||||||| |||||| |||||||||    
T  16295643 agtgatattttgacaactattttggtacaacttttgagacaactttgttgttctctctttttattggtc 16295575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 29533940 - 29533872
Alignment:
Q  105 agtgatattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttcttattggtc 172  Q
    ||||||||||| |||| ||||||||||||| | ||||||||||||||||||| |||||||| |||||||    
T  29533940 agtgatattttgacaatcattttggtacaacttttgagacaactttgttgttctctcttctcattggtc 29533872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 38471821 - 38471754
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattggt 171  Q
    ||||||||||| ||||  |||||||||||||||| ||||||||||||||||| |||||||| ||||||    
T  38471821 agtgatattttgacaattattttggtacaatctttgagacaactttgttgttctctcttctcattggt 38471754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 32152075 - 32152005
Alignment:
Q  102 agcagtgatattttaacaaccattttggtacaatcttgag-acaactttgttgttttctcttcttattggt 171  Q
    ||||||||||||| ||||||  |||||||||||| || || ||||||||||||| ||||||||||||||||    
T  32152075 agcagtgatatttgaacaacttttttggtacaatttttaggacaactttgttgtgttctcttcttattggt 32152005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 884716 - 884651
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattg 169  Q
    ||||||||||||||||| ||||||||| ||| || |||| || |||||||||||||||||||||||    
T  884716 agtgatattttaacaactattttggtataatttttgagagaattttgttgttttctcttcttattg 884651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 171
Target Start/End: Original strand, 1261267 - 1261334
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatcttg-agacaactttgttgttttctcttcttattggt 171  Q
    ||||||||||| |||||||| ||| |||||| ||  ||||||||||||||||||||||||| ||||||    
T  1261267 agtgatattttgacaaccatgttgatacaattttttagacaactttgttgttttctcttctcattggt 1261334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 171
Target Start/End: Original strand, 14847410 - 14847477
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatc-ttgagacaactttgttgttttctcttcttattggt 171  Q
    ||||||||||| |||||||||||||||||| | || |||||||||||||||| | |||||| ||||||    
T  14847410 agtgatattttgacaaccattttggtacaaccttttagacaactttgttgttctatcttctcattggt 14847477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 33972060 - 33971995
Alignment:
Q  107 tgatattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttcttattggt 171  Q
    |||||||| |||||| |||||||||||| | |||||||||| |||||||| |||||||| ||||||    
T  33972060 tgatatttgaacaactattttggtacaatttttgagacaaccttgttgttctctcttctcattggt 33971995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 277
Target Start/End: Original strand, 29846918 - 29846958
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctcttaattt 277  Q
    |||||| ||||| ||||||||||||||||||||||||||||    
T  29846918 ttgtacaaaaatggttgtacaaatatcatttctcttaattt 29846958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 33075052 - 33074984
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattggtc 172  Q
    ||||||||||| ||||| ||||| |||||| ||| ||||||||||||||||| ||| || |||||||||    
T  33075052 agtgatattttgacaactattttagtacaacctttgagacaactttgttgttctctttttttattggtc 33074984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 171
Target Start/End: Original strand, 9557824 - 9557891
Alignment:
Q  105 agtgatattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttcttattggt 171  Q
    ||||||||||| ||||  |||||||||||| | ||||||||| ||||||||| |||||||| ||||||    
T  9557824 agtgatattttgacaattattttggtacaacttttgagacaattttgttgttctctcttctcattggt 9557891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 268
Target Start/End: Complemental strand, 25595973 - 25595942
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttc 268  Q
    ||||||||||||||||||||||||||||||||    
T  25595973 ttgtaccaaaatagttgtacaaatatcatttc 25595942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 27276911 - 27276848
Alignment:
Q  107 tgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattg 169  Q
    |||||||| |||||| ||||||||||||| || |||||||| |||||||||||| || ||||||    
T  27276911 tgatatttgaacaactattttggtacaatttttgagacaaccttgttgttttctttttttattg 27276848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 164
Target Start/End: Complemental strand, 42643419 - 42643356
Alignment:
Q  102 agcagtgatattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttct 164  Q
    |||||||||||||| |||||||||||| || || | ||||||||| ||||||||| ||||||||    
T  42643419 agcagtgatattttgacaaccattttgatataatttttgagacaattttgttgttctctcttct 42643356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 172
Target Start/End: Complemental strand, 9027790 - 9027724
Alignment:
Q  107 tgatattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||| |||||| |||||||||||| | |||  ||||| |||||||| ||||||||||||||||    
T  9027790 tgatatttgaacaactattttggtacaacttttggtacaaccttgttgttctctcttcttattggtc 9027724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 271
Target Start/End: Complemental strand, 35368655 - 35368621
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctct 271  Q
    |||||| ||||||||||||||||||||||||||||    
T  35368655 ttgtacaaaaatagttgtacaaatatcatttctct 35368621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 171
Target Start/End: Original strand, 36301102 - 36301167
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatcttgagacaactttgttgttttctcttcttattggt 171  Q
    ||||||||||| |||| ||||||||||  || |||||| |||||||||||| |||||||| ||||||    
T  36301102 agtgatattttgacaatcattttggtaacat-ttgagataactttgttgttctctcttctcattggt 36301167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 172
Target Start/End: Original strand, 43149237 - 43149303
Alignment:
Q  107 tgatattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||| |||||| |||||||||||| | |||  ||||| |||||||| ||||||||||||||||    
T  43149237 tgatatttgaacaactattttggtacaacttttggtacaaccttgttgttctctcttcttattggtc 43149303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 274
Target Start/End: Complemental strand, 53021215 - 53021185
Alignment:
Q  244 aaaatagttgtacaaatatcatttctcttaa 274  Q
    |||||||||||||||||||||||||||||||    
T  53021215 aaaatagttgtacaaatatcatttctcttaa 53021185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 272
Target Start/End: Complemental strand, 884561 - 884532
Alignment:
Q  243 caaaatagttgtacaaatatcatttctctt 272  Q
    ||||||||||||||||||||||||||||||    
T  884561 caaaatagttgtacaaatatcatttctctt 884532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 272
Target Start/End: Original strand, 7867755 - 7867784
Alignment:
Q  243 caaaatagttgtacaaatatcatttctctt 272  Q
    ||||||||||||||||||||||||||||||    
T  7867755 caaaatagttgtacaaatatcatttctctt 7867784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 274
Target Start/End: Original strand, 28920096 - 28920125
Alignment:
Q  245 aaatagttgtacaaatatcatttctcttaa 274  Q
    ||||||||||||||||||||||||||||||    
T  28920096 aaatagttgtacaaatatcatttctcttaa 28920125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 47140569 - 47140618
Alignment:
Q  107 tgatattttaacaaccattttggtacaa-tcttgagacaactttgttgtt 155  Q
    ||||||||| | |||||||||||||||| | |||||||||||||||||||    
T  47140569 tgatattttgagaaccattttggtacaacttttgagacaactttgttgtt 47140618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 273
Target Start/End: Original strand, 50025739 - 50025772
Alignment:
Q  240 taccaaaatagttgtacaaatatcatttctctta 273  Q
    ||||||||| ||||||||||||||||||||||||    
T  50025739 taccaaaatggttgtacaaatatcatttctctta 50025772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 276
Target Start/End: Original strand, 52564678 - 52564711
Alignment:
Q  243 caaaatagttgtacaaatatcatttctcttaatt 276  Q
    |||||| |||||||||||||||||||||||||||    
T  52564678 caaaatggttgtacaaatatcatttctcttaatt 52564711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 14838937 - 14839005
Alignment:
Q  105 agtgatattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||||| ||||||  ||||||||||| | ||| |||||| ||||||| ||||||| |||||||||    
T  14838937 agtgatatttgaacaactcttttggtacaatttttgggacaaccttgttgtgttctctttttattggtc 14839005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 169
Target Start/End: Complemental strand, 25559886 - 25559818
Alignment:
Q  102 agcagtgatattttaacaaccattttggtacaatc-ttgagacaactttgttgttttctcttcttattg 169  Q
    |||||||||||||||| || ||||||| ||||| | ||||||||| ||| ||||| |||||||| ||||    
T  25559886 agcagtgatattttaagaatcattttgatacaacctttgagacaattttattgttctctcttctcattg 25559818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 27276884 - 27276920
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctctta 273  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  27276884 ttgtaccaaaatagttgttcaaatatcattactctta 27276920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 29555733 - 29555797
Alignment:
Q  105 agtgatattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttcttatt 168  Q
    |||||||||| ||||||  ||||||||||| | ||| |||||| ||||||| |||||||||||||    
T  29555733 agtgatatttgaacaactcttttggtacaacttttgggacaaccttgttgtgttctcttcttatt 29555797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 276
Target Start/End: Complemental strand, 30592363 - 30592331
Alignment:
Q  244 aaaatagttgtacaaatatcatttctcttaatt 276  Q
    ||||| |||||||||||||||||||||||||||    
T  30592363 aaaatggttgtacaaatatcatttctcttaatt 30592331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 38471675 - 38471639
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctctta 273  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  38471675 ttgtaccaaaatggttgtacaaatatcatttcactta 38471639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 40159883 - 40159911
Alignment:
Q  244 aaaatagttgtacaaatatcatttctctt 272  Q
    |||||||||||||||||||||||||||||    
T  40159883 aaaatagttgtacaaatatcatttctctt 40159911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 45528987 - 45529015
Alignment:
Q  244 aaaatagttgtacaaatatcatttctctt 272  Q
    |||||||||||||||||||||||||||||    
T  45528987 aaaatagttgtacaaatatcatttctctt 45529015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 50559257 - 50559285
Alignment:
Q  244 aaaatagttgtacaaatatcatttctctt 272  Q
    |||||||||||||||||||||||||||||    
T  50559257 aaaatagttgtacaaatatcatttctctt 50559285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 46903649 - 46903581
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatc-ttgagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||| |||||||    
T  46903649 agtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctctcttctcattggtc 46903581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 109 - 172
Target Start/End: Original strand, 31666102 - 31666166
Alignment:
Q  109 atattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattggtc 172  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||    
T  31666102 atattttgacaaccattttggtacaatctttgagacaactttgttgttctctcttctcattggtc 31666166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 40053085 - 40053017
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatc-ttgagacaactttgttgttttctcttcttattggtc 172  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||| | |||||||    
T  40053085 agtgatattttaacaactattttggtacaatctttgagacaactttgttgttctctcttttcattggtc 40053017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 2827602 - 2827670
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattggtc 172  Q
    ||||||||||| | |||||||||||||||| ||| ||||||| ||||||||| ||||||||||||||||    
T  2827602 agtgatattttgataaccattttggtacaacctttgagacaattttgttgttctctcttcttattggtc 2827670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 49615167 - 49615235
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatc-ttgagacaactttgttgttttctcttcttattggtc 172  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||| ||||| ||| |||| |||||||    
T  49615167 agtgatattttgacaaccattttggtacaatctttgagacaactttattgttctcttttctcattggtc 49615235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 171
Target Start/End: Original strand, 37741844 - 37741911
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattggt 171  Q
    ||||||||||| |||||||||||| |||||| || ||||||||||||||||| |||||||| ||||||    
T  37741844 agtgatattttgacaaccattttgatacaatttttgagacaactttgttgttctctcttctcattggt 37741911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 27787668 - 27787608
Alignment:
Q  105 agtgatattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttct 164  Q
    ||||||| ||| |||||||||||||||||| | ||||||||||||||||||| ||||||||    
T  27787668 agtgatagtttgacaaccattttggtacaacttttgagacaactttgttgttctctcttct 27787608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 28457239 - 28457307
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatc-ttgagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||||||||||||||||||||||||| | ||||||||||||| ||||| ||| || | |||||||    
T  28457239 agtgatattttaacaaccattttggtacaacctttgagacaactttattgttctctattttcattggtc 28457307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 171
Target Start/End: Original strand, 21446110 - 21446177
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattggt 171  Q
    ||||||||||| | |||||||||||||||| ||| ||||||||||||||| | |||||||| ||||||    
T  21446110 agtgatattttgataaccattttggtacaacctttgagacaactttgttgatctctcttctcattggt 21446177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 24158829 - 24158762
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattggt 171  Q
    ||||||||||| |||||||||| || |||| ||| ||||||||||||||||| | |||||||||||||    
T  24158829 agtgatattttgacaaccatttaggaacaacctttgagacaactttgttgttctgtcttcttattggt 24158762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 51436331 - 51436390
Alignment:
Q  112 ttttaacaaccattttggtacaatcttgagacaactttgttgttttctcttcttattggt 171  Q
    |||||||||  ||||||||||| | ||||||||||||||||||| |||||||| ||||||    
T  51436331 ttttaacaataattttggtacacttttgagacaactttgttgttctctcttctcattggt 51436390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 237 - 270
Target Start/End: Complemental strand, 41425275 - 41425242
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctc 270  Q
    ||||||||||||||||||||||||||||||||||    
T  41425275 ttgtaccaaaatagttgtacaaatatcatttctc 41425242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 644875 - 644815
Alignment:
Q  105 agtgatattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttct 164  Q
    ||||||||||| ||||||||||||||||||   ||||||||||||| ||||| ||||||||    
T  644875 agtgatattttgacaaccattttggtacaacatttgagacaactttattgttctctcttct 644815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 8312324 - 8312264
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatct-tgagacaactttgttgttttctcttct 164  Q
    ||||||||||| |||||||||||| || || || |||||||||||||||||||||| ||||    
T  8312324 agtgatattttgacaaccattttgatataacctctgagacaactttgttgttttctattct 8312264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 23399881 - 23399949
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||||| ||||||  |||||||||||| || | |||||| ||||||| |||||||||||||||||    
T  23399881 agtgatatttaaacaactcttttggtacaatttttgggacaaccttgttgtgttctcttcttattggtc 23399949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 275
Target Start/End: Original strand, 26585217 - 26585249
Alignment:
Q  243 caaaatagttgtacaaatatcatttctcttaat 275  Q
    |||||||||||||||||||||||||||||||||    
T  26585217 caaaatagttgtacaaatatcatttctcttaat 26585249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 29638894 - 29638826
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||||| ||||||  |||||||||||| || | ||||| |||||||| |||||||||||||||||    
T  29638894 agtgatatttgaacaactcttttggtacaatttttgggacaattttgttgtgttctcttcttattggtc 29638826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 41564772 - 41564840
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||||| ||||||  |||||||||||| || | |||||| ||||||| |||||||||||||||||    
T  41564772 agtgatatttgaacaactcttttggtacaatttttgggacaaccttgttgtgttctcttcttattggtc 41564840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 6396506 - 6396439
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattggt 171  Q
    |||||| |||| |||| |||||||||||||  || ||||||||||||||||| |||||||| ||||||    
T  6396506 agtgatgttttgacaatcattttggtacaacatttgagacaactttgttgttctctcttctcattggt 6396439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 272
Target Start/End: Original strand, 21854502 - 21854537
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctctt 272  Q
    ||||||||||||| ||||||||||||||||||||||    
T  21854502 ttgtaccaaaataattgtacaaatatcatttctctt 21854537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 43757765 - 43757698
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattggt 171  Q
    ||||||||||| ||||| ||||||||| ||| || ||||||||||||||||| |||||| | ||||||    
T  43757765 agtgatattttgacaactattttggtataatttttgagacaactttgttgttctctcttttcattggt 43757698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 172
Target Start/End: Complemental strand, 44714418 - 44714352
Alignment:
Q  109 atattttaacaaccattttggtacaatc-ttgagacaactttg--ttgttttctcttcttattggtc 172  Q
    |||||||||||| ||||||||||||| | ||||||||||||||  ||||| |||||| |||||||||    
T  44714418 atattttaacaatcattttggtacaacctttgagacaactttgttttgttctctctttttattggtc 44714352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 278
Target Start/End: Complemental strand, 11947821 - 11947787
Alignment:
Q  244 aaaatagttgtacaaatatcatttctcttaatttt 278  Q
    ||||| |||||||||||||||||||||||||||||    
T  11947821 aaaatggttgtacaaatatcatttctcttaatttt 11947787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 271
Target Start/End: Complemental strand, 22674745 - 22674711
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctct 271  Q
    |||||| ||||||||||||||||||||||||||||    
T  22674745 ttgtacaaaaatagttgtacaaatatcatttctct 22674711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 172
Target Start/End: Complemental strand, 48962163 - 48962097
Alignment:
Q  107 tgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||| ||||||  |||||||||||| || | |||||| ||||||| |||||||||||||||||    
T  48962163 tgatatttgaacaactcttttggtacaatttttgggacaaccttgttgtgttctcttcttattggtc 48962097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 134
Target Start/End: Complemental strand, 11038435 - 11038406
Alignment:
Q  105 agtgatattttaacaaccattttggtacaa 134  Q
    ||||||||||||||||||||||||||||||    
T  11038435 agtgatattttaacaaccattttggtacaa 11038406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 272
Target Start/End: Complemental strand, 18610800 - 18610771
Alignment:
Q  243 caaaatagttgtacaaatatcatttctctt 272  Q
    ||||||||||||||||||||||||||||||    
T  18610800 caaaatagttgtacaaatatcatttctctt 18610771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 154
Target Start/End: Complemental strand, 19427694 - 19427645
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatcttgagacaactttgttgt 154  Q
    ||||||||||||||||| ||||||||||||  |||||| || ||||||||    
T  19427694 agtgatattttaacaacaattttggtacaactttgagataattttgttgt 19427645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 270
Target Start/End: Complemental strand, 22331399 - 22331366
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctc 270  Q
    |||||||||||| |||||||||||||||||||||    
T  22331399 ttgtaccaaaatggttgtacaaatatcatttctc 22331366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 274
Target Start/End: Complemental strand, 30414908 - 30414871
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctcttaa 274  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  30414908 ttgtacaaaaatggttgtacaaatatcatttctcttaa 30414871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 1100250 - 1100214
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctctta 273  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  1100250 ttgtacaaaaatggttgtacaaatatcatttctctta 1100214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 10385460 - 10385424
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctctta 273  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  10385460 ttgtagcaaaatggttgtacaaatatcatttctctta 10385424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 279
Target Start/End: Original strand, 13355102 - 13355138
Alignment:
Q  243 caaaatagttgtacaaatatcatttctcttaattttt 279  Q
    ||||||||||||| |||||||||||||| ||||||||    
T  13355102 caaaatagttgtaaaaatatcatttctcataattttt 13355138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 23044916 - 23044944
Alignment:
Q  244 aaaatagttgtacaaatatcatttctctt 272  Q
    |||||||||||||||||||||||||||||    
T  23044916 aaaatagttgtacaaatatcatttctctt 23044944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 26910465 - 26910429
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctctta 273  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  26910465 ttgtgccaaaatggttgtacaaatatcatttctctta 26910429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 275
Target Start/End: Original strand, 27687552 - 27687584
Alignment:
Q  243 caaaatagttgtacaaatatcatttctcttaat 275  Q
    |||||| ||||||||||||||||||||||||||    
T  27687552 caaaatggttgtacaaatatcatttctcttaat 27687584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 272
Target Start/End: Complemental strand, 45042287 - 45042259
Alignment:
Q  244 aaaatagttgtacaaatatcatttctctt 272  Q
    |||||||||||||||||||||||||||||    
T  45042287 aaaatagttgtacaaatatcatttctctt 45042259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 107 - 172
Target Start/End: Original strand, 9377652 - 9377718
Alignment:
Q  107 tgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattggtc 172  Q
    ||||||||||||||||||||||||| || ||| ||||||||||||||||| ||||||||||||||||    
T  9377652 tgatattttaacaaccattttggtataacctttgagacaactttgttgttctctcttcttattggtc 9377718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 11728013 - 11728081
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatc-ttgagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||| | |||||||    
T  11728013 agtgatattttaacaatcattttggtacaatctttaagacaactttgttgttttctcttttcattggtc 11728081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 106 - 172
Target Start/End: Complemental strand, 25094530 - 25094463
Alignment:
Q  106 gtgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||||| ||||||||||| |||||||||| ||||||||||||||||| |||||||| |||||||    
T  25094530 gtgatattttgacaaccattttagtacaatctttgagacaactttgttgttctctcttctaattggtc 25094463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 40721950 - 40721883
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattggt 171  Q
    ||||||||||| |||||||||||||||||| ||| ||||||||||||||||| |||||||| ||||||    
T  40721950 agtgatattttgacaaccattttggtacaacctttgagacaactttgttgttctctcttctcattggt 40721883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 34373187 - 34373119
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattggtc 172  Q
    ||||||||||| ||||||||||||||| || ||| ||||||||||||||||| |||||||| |||||||    
T  34373187 agtgatattttgacaaccattttggtataacctttgagacaactttgttgttctctcttctcattggtc 34373119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 106 - 172
Target Start/End: Original strand, 304885 - 304952
Alignment:
Q  106 gtgatattttaacaaccattttggtacaatc-ttgagacaactttgttgttttctcttcttattggtc 172  Q
    ||||||||||||||||||||||| ||||| | |||||||||||||||||||  ||||||| |||||||    
T  304885 gtgatattttaacaaccattttgatacaacctttgagacaactttgttgttcactcttctcattggtc 304952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 102 - 172
Target Start/End: Original strand, 37827674 - 37827745
Alignment:
Q  102 agcagtgatattttaacaaccattttggtacaatc-ttgagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||||||||||||||  |||||||||||||| || |||||||||||||||| |||||| | |||||||    
T  37827674 agcagtgatattttaacaattattttggtacaatctttaagacaactttgttgttctctcttttcattggtc 37827745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 43026115 - 43026048
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattggt 171  Q
    ||||||||||| |||| ||||||||||||| ||| ||||||||||||||||| |||||||| ||||||    
T  43026115 agtgatattttgacaatcattttggtacaacctttgagacaactttgttgttctctcttctcattggt 43026048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 38724209 - 38724266
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatc-ttgagacaactttgttgttttctct 161  Q
    ||||||||||| |||||||||||||||||| | ||||||||||||||||||| |||||    
T  38724209 agtgatattttgacaaccattttggtacaacctttgagacaactttgttgttctctct 38724266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 27329001 - 27329069
Alignment:
Q  105 agtgatattttaacaaccattttggtaca-atcttgagacaactttgttgttttctcttcttattggtc 172  Q
    ||||||||||||||||| |||||||||||  | ||||||||||||||||||| ||| |||| |||||||    
T  27329001 agtgatattttaacaacaattttggtacatcttttgagacaactttgttgttctcttttctcattggtc 27329069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 24727581 - 24727523
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatc-ttgagacaactttgttgttttctctt 162  Q
    ||||||||||| |||||||||||||||||| | ||||||||||||| ||||| ||||||    
T  24727581 agtgatattttgacaaccattttggtacaacctttgagacaactttattgttctctctt 24727523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 172
Target Start/End: Complemental strand, 35518452 - 35518386
Alignment:
Q  107 tgatattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||| |||||| |||||| ||||| | ||| ||||||||||||||| ||||||||||||||||    
T  35518452 tgatatttgaacaactattttgatacaacttttgggacaactttgttgttctctcttcttattggtc 35518386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 1151708 - 1151640
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatc-ttgagacaactttgttgttttctcttcttattggtc 172  Q
    ||||||||||| ||||| |||||||||||| | ||||||||||||||||||| ||| || | |||||||    
T  1151708 agtgatattttgacaactattttggtacaacctttgagacaactttgttgttctcttttttcattggtc 1151640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 4858292 - 4858224
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatc-ttgagacaactttgttgttttctcttcttattggtc 172  Q
    ||||||||||| |||| ||||||||||||| | ||||||||| ||||||||| |||||| | |||||||    
T  4858292 agtgatattttgacaatcattttggtacaacctttgagacaattttgttgttctctcttttcattggtc 4858224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 34141622 - 34141554
Alignment:
Q  105 agtgatattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||||| ||||||  ||||||||||| | |||  ||||||||||||| |||||||||||||||||    
T  34141622 agtgatatttgaacaactcttttggtacaacttttggaacaactttgttgtgttctcttcttattggtc 34141554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 279
Target Start/End: Original strand, 3299150 - 3299185
Alignment:
Q  244 aaaatagttgtacaaatatcatttctcttaattttt 279  Q
    ||||| ||||||||||||||||||||||||||||||    
T  3299150 aaaatggttgtacaaatatcatttctcttaattttt 3299185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 172
Target Start/End: Original strand, 13850073 - 13850144
Alignment:
Q  102 agcagtgatattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||||||||| ||||| ||||||||| || | ||||||||| ||||||||| |||||| | |||||||    
T  13850073 agcagtgatattttgacaactattttggtataacttttgagacaattttgttgttctctcttttcattggtc 13850144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 172
Target Start/End: Complemental strand, 8757721 - 8757655
Alignment:
Q  107 tgatattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||| |||||| |||||||||||| | |||  ||||| |||||||| ||||||||||||||||    
T  8757721 tgatatttgaacaactattttggtacaacttttggtacaaccttgttgttctctcttcttattggtc 8757655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 274
Target Start/End: Original strand, 6215271 - 6215308
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctcttaa 274  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  6215271 ttgtaacaaaatagttgtataaatatcatttctcttaa 6215308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 277
Target Start/End: Complemental strand, 8352861 - 8352828
Alignment:
Q  244 aaaatagttgtacaaatatcatttctcttaattt 277  Q
    ||||||||||||||||||||||||||||| ||||    
T  8352861 aaaatagttgtacaaatatcatttctctttattt 8352828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 274
Target Start/End: Complemental strand, 12208475 - 12208438
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctcttaa 274  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  12208475 ttgtacaaaaatggttgtacaaatatcatttctcttaa 12208438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 270
Target Start/End: Complemental strand, 24727459 - 24727426
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctc 270  Q
    |||||||||||| |||||||||||||||||||||    
T  24727459 ttgtaccaaaatggttgtacaaatatcatttctc 24727426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 277
Target Start/End: Complemental strand, 28494885 - 28494852
Alignment:
Q  244 aaaatagttgtacaaatatcatttctcttaattt 277  Q
    |||||||||||||||||||||||||||| |||||    
T  28494885 aaaatagttgtacaaatatcatttctctaaattt 28494852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 28679304 - 28679239
Alignment:
Q  107 tgatattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttcttattggt 171  Q
    |||||||| ||||||  ||||||||||| | ||| |||||| ||||||| ||||||||||||||||    
T  28679304 tgatatttgaacaactcttttggtacaacttttgggacaaccttgttgtattctcttcttattggt 28679239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 275
Target Start/End: Complemental strand, 5031950 - 5031918
Alignment:
Q  243 caaaatagttgtacaaatatcatttctcttaat 275  Q
    |||||| ||||||||||||||||||||||||||    
T  5031950 caaaatggttgtacaaatatcatttctcttaat 5031918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 10288177 - 10288149
Alignment:
Q  243 caaaatagttgtacaaatatcatttctct 271  Q
    |||||||||||||||||||||||||||||    
T  10288177 caaaatagttgtacaaatatcatttctct 10288149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 12257080 - 12257012
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||||| ||||||  |||||||||||| || | |||||| ||||||| || ||||||||||||||    
T  12257080 agtgatatttgaacaacttttttggtacaatttttgggacaaccttgttgtgttttcttcttattggtc 12257012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 14891122 - 14891150
Alignment:
Q  243 caaaatagttgtacaaatatcatttctct 271  Q
    |||||||||||||||||||||||||||||    
T  14891122 caaaatagttgtacaaatatcatttctct 14891150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 272
Target Start/End: Complemental strand, 18531627 - 18531599
Alignment:
Q  244 aaaatagttgtacaaatatcatttctctt 272  Q
    |||||||||||||||||||||||||||||    
T  18531627 aaaatagttgtacaaatatcatttctctt 18531599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 23141533 - 23141465
Alignment:
Q  105 agtgatattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||||| ||||||  ||||||||||| | ||| |||||| |||||||| |||||||| |||||||    
T  23141533 agtgatatttgaacaactcttttggtacaacttttgggacaaccttgttgttctctcttctcattggtc 23141465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 23553323 - 23553255
Alignment:
Q  105 agtgatattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||||| ||||||  ||||||||||| | ||| |||||| |||||||| |||||||| |||||||    
T  23553323 agtgatatttgaacaactcttttggtacaacttttgggacaaccttgttgttctctcttctcattggtc 23553255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 30340173 - 30340105
Alignment:
Q  105 agtgatattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||||| ||||||  ||||||||||| | ||| |||||| |||||||| |||||||| |||||||    
T  30340173 agtgatatttgaacaactcttttggtacaacttttgggacaaccttgttgttctctcttctcattggtc 30340105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 30413764 - 30413800
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctctta 273  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  30413764 ttgtagcaaaatggttgtacaaatatcatttctctta 30413800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 272
Target Start/End: Complemental strand, 40115552 - 40115524
Alignment:
Q  244 aaaatagttgtacaaatatcatttctctt 272  Q
    |||||||||||||||||||||||||||||    
T  40115552 aaaatagttgtacaaatatcatttctctt 40115524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 54554 - 54622
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattggtc 172  Q
    ||||||||||| ||||| |||||||||||||||| ||||||||||||||||| |||||| |||||||||    
T  54554 agtgatattttgacaactattttggtacaatctttgagacaactttgttgttctctctttttattggtc 54622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 45405727 - 45405795
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatc-ttgagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||||||||||||||||||||||||| | ||||||||||||| ||||| |||||||| |||||||    
T  45405727 agtgatattttaacaaccattttggtacaacctttgagacaactttattgttctctcttctcattggtc 45405795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 5742549 - 5742617
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattggtc 172  Q
    ||||||||||| |||||||||||||||||  ||| ||||||||||||||||| |||||||| |||||||    
T  5742549 agtgatattttgacaaccattttggtacatcctttgagacaactttgttgttctctcttctcattggtc 5742617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 171
Target Start/End: Original strand, 38939084 - 38939151
Alignment:
Q  105 agtgatattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttcttattggt 171  Q
    ||||||||||| |||||||||||||||||| | |||||| |||||||||||| |||||||| ||||||    
T  38939084 agtgatattttgacaaccattttggtacaatttttgagataactttgttgttctctcttctcattggt 38939151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 28156382 - 28156314
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattggtc 172  Q
    ||||||||||| ||||| ||||| |||||| ||| ||||||||||||||||| |||||||| |||||||    
T  28156382 agtgatattttgacaactattttagtacaacctttgagacaactttgttgttctctcttctcattggtc 28156314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 171
Target Start/End: Original strand, 32674124 - 32674191
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattggt 171  Q
    ||||||||||| ||||||||||| |||||| ||| ||||||||||||||||| || ||||| ||||||    
T  32674124 agtgatattttgacaaccattttagtacaacctttgagacaactttgttgttatcccttctcattggt 32674191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 107 - 169
Target Start/End: Original strand, 34578231 - 34578294
Alignment:
Q  107 tgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattg 169  Q
    ||||||||||||||| ||||||||| ||| || | ||||||||||||||| |||||||||||||    
T  34578231 tgatattttaacaactattttggtataatttttgggacaactttgttgttctctcttcttattg 34578294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 42651097 - 42651032
Alignment:
Q  107 tgatattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttcttattggt 171  Q
    |||||||| |||||| |||||||||||| | |||||||||| |||||||| |||||||| ||||||    
T  42651097 tgatatttgaacaactattttggtacaacttttgagacaaccttgttgttctctcttctcattggt 42651032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 25430825 - 25430757
Alignment:
Q  105 agtgatattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||||| ||||||  ||||||||||| | ||| |||||| ||||||| |||||||||||||||||    
T  25430825 agtgatatttgaacaactcttttggtacaacttttgggacaaccttgttgtgttctcttcttattggtc 25430757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 28156236 - 28156200
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctctta 273  Q
    |||||||||||| ||||||||||||||||||||||||    
T  28156236 ttgtaccaaaatggttgtacaaatatcatttctctta 28156200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 28713272 - 28713204
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||||| ||||||  |||||||||||| || | |||||| ||||||| |||||||||||||||||    
T  28713272 agtgatatttgaacaactcttttggtacaatttttgggacaaccttgttgtattctcttcttattggtc 28713204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 28720619 - 28720551
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||||| ||||||  |||||||||||| || | |||||| ||||||| |||||||||||||||||    
T  28720619 agtgatatttgaacaactcttttggtacaatttttgggacaaccttgttgtattctcttcttattggtc 28720551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 28728261 - 28728193
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||||| ||||||  |||||||||||| || | |||||| ||||||| |||||||||||||||||    
T  28728261 agtgatatttgaacaactcttttggtacaatttttgggacaaccttgttgtattctcttcttattggtc 28728193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 272
Target Start/End: Original strand, 3893436 - 3893471
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctctt 272  Q
    ||||||||||||||||||||||||||||||| ||||    
T  3893436 ttgtaccaaaatagttgtacaaatatcatttatctt 3893471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 18550156 - 18550093
Alignment:
Q  107 tgatattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttcttattg 169  Q
    |||||||| |||||| |||||||||||| | ||| |||||| ||||||| ||||||||||||||    
T  18550156 tgatatttgaacaactattttggtacaacttttgggacaaccttgttgtgttctcttcttattg 18550093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 172
Target Start/End: Complemental strand, 33635753 - 33635686
Alignment:
Q  106 gtgatattttaacaaccattttggtacaatc-ttgagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||||| |||||||||||  ||||||| |||||| |||||| ||||| |||||||| |||||||    
T  33635753 gtgatattttgacaaccattttaatacaatctttgagataactttattgttctctcttctcattggtc 33635686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 172
Target Start/End: Original strand, 34838159 - 34838230
Alignment:
Q  102 agcagtgatattttaacaaccattttggtacaatcttgag-acaactttgttgttttctcttcttattggtc 172  Q
    ||||||||||||| ||||||  |||||||||||  || || ||||| ||||||| |||||||||||||||||    
T  34838159 agcagtgatatttgaacaactcttttggtacaacttttaggacaaccttgttgtgttctcttcttattggtc 34838230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 274
Target Start/End: Complemental strand, 36497688 - 36497657
Alignment:
Q  243 caaaatagttgtacaaatatcatttctcttaa 274  Q
    ||||||||||||||||||||||||||||||||    
T  36497688 caaaatagttgtacaaatatcatttctcttaa 36497657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 271
Target Start/End: Original strand, 5742695 - 5742729
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctct 271  Q
    |||||||||||| ||||||||||||||||||||||    
T  5742695 ttgtaccaaaatggttgtacaaatatcatttctct 5742729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 278
Target Start/End: Complemental strand, 12655948 - 12655914
Alignment:
Q  244 aaaatagttgtacaaatatcatttctcttaatttt 278  Q
    ||||| |||||||||||||||||||||||||||||    
T  12655948 aaaatggttgtacaaatatcatttctcttaatttt 12655914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 25634157 - 25634111
Alignment:
Q  12 gagaagaagaatgagattgcatgaattggggaagatgggaggtgaat 58  Q
    ||||||||||||||| | ||| |||| ||||||||||||||||||||    
T  25634157 gagaagaagaatgaggtcgcaggaataggggaagatgggaggtgaat 25634111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 274
Target Start/End: Original strand, 22203253 - 22203290
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctcttaa 274  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  22203253 ttgtacaaaaatggttgtacaaatatcatttctcttaa 22203290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 276
Target Start/End: Original strand, 39021487 - 39021520
Alignment:
Q  243 caaaatagttgtacaaatatcatttctcttaatt 276  Q
    |||||| |||||||||||||||||||||||||||    
T  39021487 caaaatggttgtacaaatatcatttctcttaatt 39021520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 270
Target Start/End: Complemental strand, 41776219 - 41776186
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctc 270  Q
    |||||| |||||||||||||||||||||||||||    
T  41776219 ttgtacaaaaatagttgtacaaatatcatttctc 41776186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 273
Target Start/End: Complemental strand, 6440106 - 6440078
Alignment:
Q  245 aaatagttgtacaaatatcatttctctta 273  Q
    |||||||||||||||||||||||||||||    
T  6440106 aaatagttgtacaaatatcatttctctta 6440078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 14233678 - 14233706
Alignment:
Q  244 aaaatagttgtacaaatatcatttctctt 272  Q
    |||||||||||||||||||||||||||||    
T  14233678 aaaatagttgtacaaatatcatttctctt 14233706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 272
Target Start/End: Original strand, 32674273 - 32674305
Alignment:
Q  240 taccaaaatagttgtacaaatatcatttctctt 272  Q
    ||||||||| |||||||||||||||||||||||    
T  32674273 taccaaaatggttgtacaaatatcatttctctt 32674305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 276
Target Start/End: Complemental strand, 34641571 - 34641539
Alignment:
Q  244 aaaatagttgtacaaatatcatttctcttaatt 276  Q
    ||||| |||||||||||||||||||||||||||    
T  34641571 aaaatggttgtacaaatatcatttctcttaatt 34641539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 35701865 - 35701901
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctctta 273  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  35701865 ttgtacaaaaatggttgtacaaatatcatttctctta 35701901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 40459803 - 40459847
Alignment:
Q  240 taccaaaatagttgtacaaatatcatttctcttaattttttgaca 284  Q
    ||||||||||||||||||||| ||||||||| | ||| |||||||    
T  40459803 taccaaaatagttgtacaaatttcatttctcattattctttgaca 40459847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 3518362 - 3518294
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattggtc 172  Q
    ||||||||||| |||||||||||||||||| ||| ||||||||||||||||| |||||||| |||||||    
T  3518362 agtgatattttgacaaccattttggtacaacctttgagacaactttgttgttctctcttctcattggtc 3518294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 10469839 - 10469907
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattggtc 172  Q
    ||||||||||| |||| ||||||||||||||||| ||||||||||||||||| |||||||| |||||||    
T  10469839 agtgatattttgacaatcattttggtacaatctttgagacaactttgttgttctctcttctcattggtc 10469907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 34698954 - 34698890
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatcttgagacaactttgttgttttctcttcttattg 169  Q
    |||||||||||||||| |||||||||||||  |||| ||||||||||||||||||||||| ||||    
T  34698954 agtgatattttaacaatcattttggtacaactttgaaacaactttgttgttttctcttctcattg 34698890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 35358827 - 35358893
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatc-ttgagacaactttgttgttttctcttcttattgg 170  Q
    |||||||||||| ||||||||||||||||| | ||||||||||||||||||| |||||||| |||||    
T  35358827 agtgatattttagcaaccattttggtacaacctttgagacaactttgttgttctctcttctcattgg 35358893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 8761826 - 8761758
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatc-ttgagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||| ||||||||||||||||||||| | ||||||||||||||||||| |||||| | |||||||    
T  8761826 agtgatatgttaacaaccattttggtacaacctttgagacaactttgttgttctctcttttcattggtc 8761758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 37821033 - 37821101
Alignment:
Q  105 agtgatattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||||| |||||| |||||||||||| | ||| |||||| ||||||| |||||||||||||||||    
T  37821033 agtgatatttgaacaactattttggtacaacttttgggacaaccttgttgtgttctcttcttattggtc 37821101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 172
Target Start/End: Original strand, 12612911 - 12612977
Alignment:
Q  107 tgatattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||| ||||||||||||||||||| | ||| |||||| |||||||| |||||||| |||||||    
T  12612911 tgatatttgaacaaccattttggtacaacttttgggacaaccttgttgttctctcttctcattggtc 12612977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 172
Target Start/End: Original strand, 43152954 - 43153020
Alignment:
Q  107 tgatattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||| |||||| |||||||||||| ||||  ||||||||||||||| |||||||| |||||||    
T  43152954 tgatatttgaacaactattttggtacaactcttaggacaactttgttgttctctcttctcattggtc 43153020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 31625968 - 31626036
Alignment:
Q  105 agtgatattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttcttattggtc 172  Q
    ||||||||||| ||||||||||| |||||| | || |||||||||| ||||| |||||||| |||||||    
T  31625968 agtgatattttgacaaccattttagtacaacttttaagacaactttattgttctctcttctcattggtc 31626036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 35616693 - 35616761
Alignment:
Q  105 agtgatattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||||| |||||| ||||||||| || | ||| |||||| |||||||| ||||||||||||||||    
T  35616693 agtgatatttgaacaactattttggtataaattttgggacaaccttgttgttctctcttcttattggtc 35616761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 1108181 - 1108109
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatc-ttgag----acaactttgttgttttctcttcttattggtc 172  Q
    ||||||||||| |||||||||||||||||| | |||||    |||||||||||||| |||||||| |||||||    
T  1108181 agtgatattttgacaaccattttggtacaacctttgagacaaacaactttgttgttctctcttctcattggtc 1108109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 272
Target Start/End: Original strand, 24330020 - 24330055
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctctt 272  Q
    ||||||||||||| ||||||||||||||||||||||    
T  24330020 ttgtaccaaaataattgtacaaatatcatttctctt 24330055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 272
Target Start/End: Complemental strand, 38919896 - 38919861
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctctt 272  Q
    |||||| |||||||||||||||||||||||||||||    
T  38919896 ttgtacaaaaatagttgtacaaatatcatttctctt 38919861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 271
Target Start/End: Complemental strand, 41192620 - 41192586
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctct 271  Q
    ||||| |||||||||||||||||||||||||||||    
T  41192620 ttgtagcaaaatagttgtacaaatatcatttctct 41192586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 274
Target Start/End: Complemental strand, 3031867 - 3031830
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctcttaa 274  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  3031867 ttgtacaaaaatggttgtacaaatatcatttctcttaa 3031830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 5005277 - 5005224
Alignment:
Q  120 accattttggtacaa-tcttgagacaactttgttgttttctcttcttattggtc 172  Q
    ||||||||||||||| | ||||||||||||||||||| |||||| | |||||||    
T  5005277 accattttggtacaacttttgagacaactttgttgttctctcttatcattggtc 5005224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 274
Target Start/End: Original strand, 18729327 - 18729364
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctcttaa 274  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  18729327 ttgtacaaaaatggttgtacaaatatcatttctcttaa 18729364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 280
Target Start/End: Complemental strand, 36572718 - 36572681
Alignment:
Q  243 caaaatagttgtacaaatatcatttctcttaatttttt 280  Q
    |||||||||| ||||||||||||||||||| |||||||    
T  36572718 caaaatagttatacaaatatcatttctctttatttttt 36572681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 272
Target Start/End: Complemental strand, 5996693 - 5996665
Alignment:
Q  244 aaaatagttgtacaaatatcatttctctt 272  Q
    |||||||||||||||||||||||||||||    
T  5996693 aaaatagttgtacaaatatcatttctctt 5996665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 14508201 - 14508229
Alignment:
Q  243 caaaatagttgtacaaatatcatttctct 271  Q
    |||||||||||||||||||||||||||||    
T  14508201 caaaatagttgtacaaatatcatttctct 14508229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 19844354 - 19844382
Alignment:
Q  244 aaaatagttgtacaaatatcatttctctt 272  Q
    |||||||||||||||||||||||||||||    
T  19844354 aaaatagttgtacaaatatcatttctctt 19844382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 272
Target Start/End: Complemental strand, 29803251 - 29803223
Alignment:
Q  244 aaaatagttgtacaaatatcatttctctt 272  Q
    |||||||||||||||||||||||||||||    
T  29803251 aaaatagttgtacaaatatcatttctctt 29803223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 272
Target Start/End: Complemental strand, 34428186 - 34428158
Alignment:
Q  244 aaaatagttgtacaaatatcatttctctt 272  Q
    |||||||||||||||||||||||||||||    
T  34428186 aaaatagttgtacaaatatcatttctctt 34428158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 272
Target Start/End: Complemental strand, 35165705 - 35165677
Alignment:
Q  244 aaaatagttgtacaaatatcatttctctt 272  Q
    |||||||||||||||||||||||||||||    
T  35165705 aaaatagttgtacaaatatcatttctctt 35165677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 39032496 - 39032564
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||||| ||||||  ||||| |||||| || | |||||| ||||||| |||||||||||||||||    
T  39032496 agtgatatttgaacaactcttttgatacaatttttgggacaaccttgttgtgttctcttcttattggtc 39032564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 30250190 - 30250258
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattggtc 172  Q
    ||||||||||||| || ||||||||||||| ||| ||||||||||||||||| |||||| |||||||||    
T  30250190 agtgatattttaaaaatcattttggtacaacctttgagacaactttgttgttctctctttttattggtc 30250258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 37732128 - 37732060
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatc-ttgagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||||||||||||||||| ||||||||| |||| |||||||| ||||| |||||| |||||||||    
T  37732128 agtgatattttaacaaccatttcggtacaatctttgaaacaactttattgttctctctttttattggtc 37732060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 55960879 - 55960824
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatc-ttgagacaactttgttgttttct 159  Q
    |||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||    
T  55960879 agtgatattttaacaaccattttgatacaatctttgagacaacgttgttgttttct 55960824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 1987605 - 1987673
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattggtc 172  Q
    ||||||||||| |||| ||||||||||||| ||| ||||||||||||||||| |||||| | |||||||    
T  1987605 agtgatattttgacaatcattttggtacaacctttgagacaactttgttgttctctcttttcattggtc 1987673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 6093497 - 6093565
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatc-ttgagacaactttgttgttttctcttcttattggtc 172  Q
    ||||||||||||||||| ||||||||| |||| ||||||||| ||||||||| |||||| |||| ||||    
T  6093497 agtgatattttaacaactattttggtataatctttgagacaattttgttgttctctctttttatcggtc 6093565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 9827877 - 9827945
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattggtc 172  Q
    ||||||||||| |||| |||||||||| || ||| ||||||||||||||||| |||||||| |||||||    
T  9827877 agtgatattttgacaatcattttggtataacctttgagacaactttgttgttatctcttctcattggtc 9827945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 46309015 - 46309083
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatc-ttgagacaactttgttgttttctcttcttattggtc 172  Q
    ||||||||||| |||||||||||||||||| | ||||||||||||||| ||| |||||| | |||||||    
T  46309015 agtgatattttgacaaccattttggtacaacctttgagacaactttgtagttctctcttttcattggtc 46309083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 26442280 - 26442331
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatc-ttgagacaactttgttgtt 155  Q
    ||||||||||||||||| |||||||||||| | |||||||||||||||||||    
T  26442280 agtgatattttaacaacaattttggtacaacctttgagacaactttgttgtt 26442331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 275
Target Start/End: Original strand, 29577474 - 29577512
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctcttaat 275  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  29577474 ttgtacaaaaatagttgtacaaatatcatttctcttaat 29577512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 271
Target Start/End: Complemental strand, 43864067 - 43864033
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctct 271  Q
    |||||||||||||||||||||||||||||||||||    
T  43864067 ttgtaccaaaatagttgtacaaatatcatttctct 43864033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 4949128 - 4949193
Alignment:
Q  107 tgatattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttcttattggt 171  Q
    ||||||||| | |||||||||||||||| | ||||||||||||||||||| | |||||| ||||||    
T  4949128 tgatattttgataaccattttggtacaacttttgagacaactttgttgttctttcttctcattggt 4949193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 237 - 270
Target Start/End: Original strand, 4949272 - 4949305
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctc 270  Q
    ||||||||||||||||||||||||||||||||||    
T  4949272 ttgtaccaaaatagttgtacaaatatcatttctc 4949305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 277
Target Start/End: Complemental strand, 42853965 - 42853932
Alignment:
Q  244 aaaatagttgtacaaatatcatttctcttaattt 277  Q
    ||||||||||||||||||||||||||||||||||    
T  42853965 aaaatagttgtacaaatatcatttctcttaattt 42853932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 279
Target Start/End: Original strand, 53662472 - 53662508
Alignment:
Q  243 caaaatagttgtacaaatatcatttctcttaattttt 279  Q
    |||||||||||||||||||||||||||||||| ||||    
T  53662472 caaaatagttgtacaaatatcatttctcttaagtttt 53662508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 274
Target Start/End: Complemental strand, 6290489 - 6290458
Alignment:
Q  243 caaaatagttgtacaaatatcatttctcttaa 274  Q
    ||||||||||||||||||||||||||||||||    
T  6290489 caaaatagttgtacaaatatcatttctcttaa 6290458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 275
Target Start/End: Complemental strand, 12241084 - 12241053
Alignment:
Q  244 aaaatagttgtacaaatatcatttctcttaat 275  Q
    ||||||||||||||||||||||||||||||||    
T  12241084 aaaatagttgtacaaatatcatttctcttaat 12241053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 272
Target Start/End: Original strand, 26442428 - 26442463
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctctt 272  Q
    |||||||||||| |||||||||||||||||||||||    
T  26442428 ttgtaccaaaatggttgtacaaatatcatttctctt 26442463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 272
Target Start/End: Original strand, 31413813 - 31413848
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctctt 272  Q
    |||||| |||||||||||||||||||||||||||||    
T  31413813 ttgtacaaaaatagttgtacaaatatcatttctctt 31413848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 274
Target Start/End: Original strand, 33093148 - 33093179
Alignment:
Q  243 caaaatagttgtacaaatatcatttctcttaa 274  Q
    ||||||||||||||||||||||||||||||||    
T  33093148 caaaatagttgtacaaatatcatttctcttaa 33093179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 34538109 - 34538058
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatc-ttgagacaactttgttgtt 155  Q
    ||||||||||| ||||| |||||||||||| | |||||||||||||||||||    
T  34538109 agtgatattttgacaactattttggtacaacctttgagacaactttgttgtt 34538058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 276
Target Start/End: Complemental strand, 45418100 - 45418061
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctcttaatt 276  Q
    |||||||||||| ||| |||||||||||||||||||||||    
T  45418100 ttgtaccaaaatggttatacaaatatcatttctcttaatt 45418061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 272
Target Start/End: Original strand, 54803370 - 54803401
Alignment:
Q  241 accaaaatagttgtacaaatatcatttctctt 272  Q
    ||||||||||||||||||||||||||||||||    
T  54803370 accaaaatagttgtacaaatatcatttctctt 54803401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 21766729 - 21766659
Alignment:
Q  102 agcagtgatattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttcttattggt 171  Q
    ||||||||||||| ||||||  |||||||| || | ||| |||||| ||||||| ||||||||||||||||    
T  21766729 agcagtgatatttgaacaactcttttggtataacttttgggacaaccttgttgtgttctcttcttattggt 21766659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 271
Target Start/End: Complemental strand, 31318786 - 31318752
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctct 271  Q
    |||||||||||| ||||||||||||||||||||||    
T  31318786 ttgtaccaaaatggttgtacaaatatcatttctct 31318752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 270
Target Start/End: Original strand, 36947133 - 36947163
Alignment:
Q  240 taccaaaatagttgtacaaatatcatttctc 270  Q
    |||||||||||||||||||||||||||||||    
T  36947133 taccaaaatagttgtacaaatatcatttctc 36947163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 39449200 - 39449166
Alignment:
Q  243 caaaatagttgtacaaatatcatttctcttaattt 277  Q
    ||||||||||||| |||||||||||||||||||||    
T  39449200 caaaatagttgtataaatatcatttctcttaattt 39449166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 272
Target Start/End: Original strand, 940303 - 940332
Alignment:
Q  243 caaaatagttgtacaaatatcatttctctt 272  Q
    ||||||||||||||||||||||||||||||    
T  940303 caaaatagttgtacaaatatcatttctctt 940332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 270
Target Start/End: Complemental strand, 36110167 - 36110134
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctc 270  Q
    |||||| |||||||||||||||||||||||||||    
T  36110167 ttgtacaaaaatagttgtacaaatatcatttctc 36110134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 270
Target Start/End: Original strand, 36871195 - 36871228
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctc 270  Q
    |||||| |||||||||||||||||||||||||||    
T  36871195 ttgtacaaaaatagttgtacaaatatcatttctc 36871228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 274
Target Start/End: Complemental strand, 41170806 - 41170769
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctcttaa 274  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  41170806 ttgtaccaaaatggttgtacaaatatcatttatcttaa 41170769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 272
Target Start/End: Complemental strand, 42815431 - 42815402
Alignment:
Q  243 caaaatagttgtacaaatatcatttctctt 272  Q
    ||||||||||||||||||||||||||||||    
T  42815431 caaaatagttgtacaaatatcatttctctt 42815402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 270
Target Start/End: Original strand, 43511685 - 43511718
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctc 270  Q
    |||||| |||||||||||||||||||||||||||    
T  43511685 ttgtacaaaaatagttgtacaaatatcatttctc 43511718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 273
Target Start/End: Original strand, 50890118 - 50890147
Alignment:
Q  244 aaaatagttgtacaaatatcatttctctta 273  Q
    ||||||||||||||||||||||||||||||    
T  50890118 aaaatagttgtacaaatatcatttctctta 50890147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 276
Target Start/End: Original strand, 53781880 - 53781913
Alignment:
Q  243 caaaatagttgtacaaatatcatttctcttaatt 276  Q
    ||||||||||||||||||||||||||||| ||||    
T  53781880 caaaatagttgtacaaatatcatttctctaaatt 53781913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 1868920 - 1868956
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctctta 273  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  1868920 ttgtacaaaaatggttgtacaaatatcatttctctta 1868956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 18944464 - 18944396
Alignment:
Q  105 agtgatattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||||| ||||||  ||||||||||| | ||| |||||| || |||| |||||||||||||||||    
T  18944464 agtgatatttgaacaactcttttggtacaacttttgggacaaccttattgtgttctcttcttattggtc 18944396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 33820381 - 33820409
Alignment:
Q  244 aaaatagttgtacaaatatcatttctctt 272  Q
    |||||||||||||||||||||||||||||    
T  33820381 aaaatagttgtacaaatatcatttctctt 33820409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 35017180 - 35017152
Alignment:
Q  243 caaaatagttgtacaaatatcatttctct 271  Q
    |||||||||||||||||||||||||||||    
T  35017180 caaaatagttgtacaaatatcatttctct 35017152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 36110313 - 36110245
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||||| ||||||  ||||| |||||| || | |||||| ||||||| |||||||||||||||||    
T  36110313 agtgatatttgaacaactcttttgatacaatttttgggacaaccttgttgtgttctcttcttattggtc 36110245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 271
Target Start/End: Original strand, 40629384 - 40629412
Alignment:
Q  243 caaaatagttgtacaaatatcatttctct 271  Q
    |||||||||||||||||||||||||||||    
T  40629384 caaaatagttgtacaaatatcatttctct 40629412  T

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Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 272
Target Start/End: Original strand, 44272855 - 44272883
Alignment:
Q  244 aaaatagttgtacaaatatcatttctctt 272  Q
    |||||||||||||||||||||||||||||    
T  44272855 aaaatagttgtacaaatatcatttctctt 44272883  T

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Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 45418241 - 45418197
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatcttgagacaacttt 149  Q
    |||||||||||||| ||||||||||||||   |||||||||||||    
T  45418241 agtgatattttaacgaccattttggtacacctttgagacaacttt 45418197  T

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Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 152
Target Start/End: Complemental strand, 46686404 - 46686356
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatc-ttgagacaactttgtt 152  Q
    ||||||||||| |||||||||||||||||| | |||| |||||||||||    
T  46686404 agtgatattttgacaaccattttggtacaacctttgatacaactttgtt 46686356  T

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Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 47014966 - 47014938
Alignment:
Q  243 caaaatagttgtacaaatatcatttctct 271  Q
    |||||||||||||||||||||||||||||    
T  47014966 caaaatagttgtacaaatatcatttctct 47014938  T

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Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 50291461 - 50291393
Alignment:
Q  105 agtgatattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttcttattggtc 172  Q
    |||| ||||| ||||||  ||||||||||| | ||| |||||| ||||||| |||||||||||||||||    
T  50291461 agtgttatttgaacaactcttttggtacaacttttgggacaaccttgttgtgttctcttcttattggtc 50291393  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 34976795 - 34976727
Alignment:
Q  105 agtgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||||||  ||||||||||||||||| ||| |||| |||||||||||| |||||||| |||||||    
T  34976795 agtgatattttgtcaaccattttggtacaacctttgagataactttgttgttctctcttctcattggtc 34976727  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 24195381 - 24195436
Alignment:
Q  12 gagaagaagaatgagattgcatgaattggggaagatgggaggtgaatgctgttttt 67  Q
    |||||||||||| |||||||| |||| ||||||||||||||| ||||||| |||||    
T  24195381 gagaagaagaatcagattgcaggaataggggaagatgggaggggaatgcttttttt 24195436  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 171
Target Start/End: Original strand, 3335347 - 3335417
Alignment:
Q  102 agcagtgatattttaacaaccattttggtacaatctt-gagacaactttgttgttttctcttcttattggt 171  Q
    |||||||||||||| ||| |||||||| |||||| || ||||||||||||||||| |||||| | ||||||    
T  3335347 agcagtgatattttgacagccattttgatacaatatttgagacaactttgttgttctctcttttcattggt 3335417  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 172
Target Start/End: Original strand, 608550 - 608621
Alignment:
Q  102 agcagtgatattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttcttattggtc 172  Q
    |||| |||||||| |||||| |||||||||||| | ||| |||||| |||||||| |||||||| |||||||    
T  608550 agcaatgatatttgaacaactattttggtacaactgttgggacaaccttgttgttctctcttctcattggtc 608621  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 279
Target Start/End: Original strand, 9188989 - 9189024
Alignment:
Q  244 aaaatagttgtacaaatatcatttctcttaattttt 279  Q
    ||||| ||||||||||||||||||||||||||||||    
T  9188989 aaaatggttgtacaaatatcatttctcttaattttt 9189024  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 270
Target Start/End: Original strand, 9395364 - 9395397
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctc 270  Q
    |||||| |||||||||||||||||||||||||||    
T  9395364 ttgtacaaaaatagttgtacaaatatcatttctc 9395397  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 277
Target Start/End: Original strand, 16328735 - 16328768
Alignment:
Q  244 aaaatagttgtacaaatatcatttctcttaattt 277  Q
    ||||| ||||||||||||||||||||||||||||    
T  16328735 aaaatggttgtacaaatatcatttctcttaattt 16328768  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 277
Target Start/End: Original strand, 16368092 - 16368125
Alignment:
Q  244 aaaatagttgtacaaatatcatttctcttaattt 277  Q
    ||||| ||||||||||||||||||||||||||||    
T  16368092 aaaatggttgtacaaatatcatttctcttaattt 16368125  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 272
Target Start/End: Complemental strand, 27334885 - 27334856
Alignment:
Q  243 caaaatagttgtacaaatatcatttctctt 272  Q
    ||||||||||||||||||||||||||||||    
T  27334885 caaaatagttgtacaaatatcatttctctt 27334856  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 272
Target Start/End: Complemental strand, 27395625 - 27395596
Alignment:
Q  243 caaaatagttgtacaaatatcatttctctt 272  Q
    ||||||||||||||||||||||||||||||    
T  27395625 caaaatagttgtacaaatatcatttctctt 27395596  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 28965878 - 28965914
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctctta 273  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  28965878 ttgtaacaaaatggttgtacaaatatcatttctctta 28965914  T

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Target: scaffold0014 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 145226 - 145158
Alignment:
Q  105 agtgatattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttcttattggtc 172  Q
    |||||||||| ||||||  ||||||||||| | ||| |||||| ||||||| |||||||||||||||||    
T  145226 agtgatatttgaacaactcttttggtacaacttttgggacaaccttgttgtgttctcttcttattggtc 145158  T

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Target: scaffold0651 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0651
Description:

Target: scaffold0651; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 271
Target Start/End: Original strand, 4884 - 4918
Alignment:
Q  237 ttgtaccaaaatagttgtacaaatatcatttctct 271  Q
    |||||||||||| ||||||||||||||||||||||    
T  4884 ttgtaccaaaatggttgtacaaatatcatttctct 4918  T

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Target: scaffold0662 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 1105 - 1077
Alignment:
Q  243 caaaatagttgtacaaatatcatttctct 271  Q
    |||||||||||||||||||||||||||||    
T  1105 caaaatagttgtacaaatatcatttctct 1077  T

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Target: scaffold0592 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0592
Description:

Target: scaffold0592; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 172
Target Start/End: Complemental strand, 1085 - 1021
Alignment:
Q  109 atattttaacaaccattttggtacaa-tcttgagacaactttgttgttttctcttcttattggtc 172  Q
    ||||||| ||||| |||||||||||| | |||||| |||||||||||| |||||| | |||||||    
T  1085 atattttgacaactattttggtacaacttttgagataactttgttgttctctcttttcattggtc 1021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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