View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12776_low_8 (Length: 408)
Name: NF12776_low_8
Description: NF12776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12776_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 16 - 393
Target Start/End: Original strand, 5280198 - 5280575
Alignment:
| Q |
16 |
atgaagtgagatggaatggaatggtaaataattatcttttattgtttagattttatcttttgcatcttccatcaatactcatgttacaattcttaatttt |
115 |
Q |
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| T |
5280198 |
atgaagtgagatggaatggaatggtaaataattatcttttattgtttagattttatcttttgcatcttccatcaatactcatgttacaattcttaatttt |
5280297 |
T |
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| Q |
116 |
cagcacaataccccatcaattcctcttgcttgctcagtcttgtttcttgcgttctannnnnnncgtgtgctttttcaatattaaaaagggatcctatcac |
215 |
Q |
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| T |
5280298 |
cagcacaataccccatcaattcctcttgcttgctcagtcttgtttcttgcgttctatttttttcgtgtgctttttcaatattaaaaagggatcctatcac |
5280397 |
T |
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| Q |
216 |
attttcttgcactggtttttgtgtattagttgcaannnnnnnnaaggaaataagattttagtcgtaatatatttgacatgataatagtgttttaaaaaag |
315 |
Q |
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|||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5280398 |
attttcttgcactggtttttctgtattagttgcaattctttttaaggaaataatattttagtcgtaatatatttgacatgataatagtgttttaaaaaag |
5280497 |
T |
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| Q |
316 |
tagagtggaattaaaaagttataactctttttgttccacccacattccaaacaatgtagtggaaacatttcataaaat |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
5280498 |
tagagtggaattaaaaagttataactctttttgttccacccacttttcaaacaatgtagtggaaacatttcataaaat |
5280575 |
T |
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