View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12777_high_2 (Length: 324)
Name: NF12777_high_2
Description: NF12777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12777_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 14372345 - 14372638
Alignment:
| Q |
18 |
cttaatcccaataatattattgctacccctaaccttaatcttccggtcctttccagtagctttccaaaaaccattttttgttgtccttttaaacctttta |
117 |
Q |
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| T |
14372345 |
cttaatcccaataatattattgctacccctaaccttaatcttccggtcctttccagtagctttccaaaaaccattttttgttgtccttttaaacctttta |
14372444 |
T |
|
| Q |
118 |
ctctttgcatacttgtaatcaataggacacaagaaaaaccattctgggtcatctgattttaccacggaacaagctgaaaaagatgaagaacattaaaaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14372445 |
ctctttgcatacttgtaatcaataggacacaagaaaaaccattctgggtcatctgattttaccacggaacaagctgaaaaagatgaagaacattaaaaag |
14372544 |
T |
|
| Q |
218 |
gttgcattttgaggctgatcataatatcataggctagttttggctttagctgaacaaaaacaaaacataggaaggaaactgtctactactacct |
311 |
Q |
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| T |
14372545 |
gttgcattttgaggttgatcataatatcataggctagttttggctttagctgaacaaaaacaaaacataggaaggaaactgtctactactacct |
14372638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 8705382 - 8705173
Alignment:
| Q |
18 |
cttaatcccaataatattattgctacccctaaccttaatcttccggtcctttccagtagctttccaaaaaccattttttgttgtccttttaaacctttta |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||| |||||||||||| |
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| T |
8705382 |
cttaatcccaataatattattgctacccctaaccttaatcttccggtccttaccagtagctttccaaaaaccagtatttgttgtcctcttaaacctttta |
8705283 |
T |
|
| Q |
118 |
ctctttgcatacttgtaatcaataggacacaagaaaaaccattctgggtcatctgattttaccacggaacaagctgaaaaagatgaagaacattaaaaag |
217 |
Q |
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||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| || ||| ||||||||||||||||| |||||||||||| |
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| T |
8705282 |
ctcttggcatacttataatcaataggacacaaaaaaaaccattctgggtcatctgattttacaaccgaaaaagctgaaaaagatgaaaaacattaaaaag |
8705183 |
T |
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| Q |
218 |
gttgcatttt |
227 |
Q |
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|||||||||| |
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| T |
8705182 |
gttgcatttt |
8705173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 8740458 - 8740255
Alignment:
| Q |
18 |
cttaatcccaataatattattgctacccctaaccttaatcttccggtcctttccagtagctttccaaaaaccattttttgttgtccttttaaacctttta |
117 |
Q |
| |
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|||| |||||||||| |||||| |||| |||| |||||| | || || |||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
8740458 |
cttagtcccaataattttattggtacctctaatcttaatgctacgatcatttccagtagctttccaaaaaccattattcgttgtccttttaaacctttta |
8740359 |
T |
|
| Q |
118 |
ctctttgcatacttgtaatcaataggacacaagaaaaaccattctgggtcatctgattttaccacggaacaagctgaaaaagatgaagaacattaaaaag |
217 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||| ||| |||| |||||||||||||||| |||||||| ||| |
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| T |
8740358 |
ctctttgcatacttgtattcaataggacacaagaaaaaccattcttggtcatcagattttatcactgaacgagctgaaaaagatgaaaaacattaacaag |
8740259 |
T |
|
| Q |
218 |
gttg |
221 |
Q |
| |
|
|||| |
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|
| T |
8740258 |
gttg |
8740255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 8723817 - 8723637
Alignment:
| Q |
18 |
cttaatcccaataatattattgctacccctaaccttaatcttccggtcctttccagtagctttccaaaaaccattttttgttgtccttttaaacctttta |
117 |
Q |
| |
|
|||||||||||||| | |||| ||||||||| | |||| || |||||| ||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
8723817 |
cttaatcccaataacttcattggtacccctaatcctaatgttacggtccattccagtagctttccaaaaaccattattagttgtccttttaaacctttta |
8723718 |
T |
|
| Q |
118 |
ctctttgcatacttgtaatcaataggacacaagaaaaaccattctgggtcatctgattttaccacggaacaagctgaaaaa |
198 |
Q |
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||||||||||||||||| |||||||| |||||||||||||||||| ||||||| ||||||| ||| |||| |||||||||| |
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| T |
8723717 |
ctctttgcatacttgtattcaatagggcacaagaaaaaccattcttggtcatcagattttatcaccgaacgagctgaaaaa |
8723637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 224 - 307
Target Start/End: Complemental strand, 8704795 - 8704712
Alignment:
| Q |
224 |
ttttgaggctgatcataatatcataggctagttttggctttagctgaacaaaaacaaaacataggaaggaaactgtctactact |
307 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||| |||| |
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| T |
8704795 |
ttttgaggttgatcataatatcataggctagttttggctttagctgaataaaaacaaaatataggaaggaaattgtctagtact |
8704712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 8691014 - 8690893
Alignment:
| Q |
106 |
ttaaaccttttactctttgcatacttgtaatcaataggacacaagaaaaaccattctgggtcatctgattttaccacggaacaagctgaaaaagatgaag |
205 |
Q |
| |
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|||||||||||||| ||||| || |||||||| |||||| |||||||||||||| || |||| ||||||| || |||||||||||||||||| || |
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| T |
8691014 |
ttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaagatcaaa |
8690915 |
T |
|
| Q |
206 |
aacattaaaaaggttgcatttt |
227 |
Q |
| |
|
||||||| |||| ||||||||| |
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| T |
8690914 |
aacattagaaagattgcatttt |
8690893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 106 - 178
Target Start/End: Complemental strand, 8738823 - 8738751
Alignment:
| Q |
106 |
ttaaaccttttactctttgcatacttgtaatcaataggacacaagaaaaaccattctgggtcatctgatttta |
178 |
Q |
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|||||| ||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||| |||||||| |
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| T |
8738823 |
ttaaactttttactctttgcgtacttgtaatcacaaggacacaagaaaaaccattccgggtcatgtgatttta |
8738751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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