View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12777_low_1 (Length: 454)

Name: NF12777_low_1
Description: NF12777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12777_low_1
NF12777_low_1
[»] chr2 (17 HSPs)
chr2 (49-420)||(6915171-6915542)
chr2 (169-267)||(10543505-10543603)
chr2 (169-267)||(10471307-10471405)
chr2 (169-267)||(28106207-28106305)
chr2 (187-267)||(27966389-27966469)
chr2 (169-267)||(10859023-10859121)
chr2 (280-336)||(10492777-10492833)
chr2 (279-331)||(28105350-28105402)
chr2 (273-336)||(10463585-10463648)
chr2 (273-320)||(10507349-10507396)
chr2 (285-336)||(10860707-10860758)
chr2 (274-336)||(10474161-10474223)
chr2 (280-336)||(7476566-7476622)
chr2 (285-336)||(10848803-10848854)
chr2 (188-250)||(9081351-9081413)
chr2 (279-336)||(7478731-7478788)
chr2 (196-260)||(10505487-10505551)
[»] chr7 (5 HSPs)
chr7 (169-267)||(15044800-15044898)
chr7 (82-172)||(15043971-15044061)
chr7 (269-340)||(15045570-15045641)
chr7 (367-420)||(15047553-15047606)
chr7 (49-84)||(15043819-15043854)
[»] chr8 (1 HSPs)
chr8 (284-335)||(44307022-44307073)
[»] chr5 (1 HSPs)
chr5 (169-267)||(33601026-33601124)


Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 49 - 420
Target Start/End: Complemental strand, 6915542 - 6915171
Alignment:
Q  49 aaatcacccttccgaatgacgccctcataaactcttagatatgttaactgaccaaacttcctttgctccaacttgaaagccaatgctacaaggggcccat 148  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  6915542 aaatcacccttccgaatgacaccctcataaactcttagatatgttaactgaccaaacttcgtttgctccaacttgaaagccaatgctacaagaggcccat 6915443  T
Q  149 cgggacttccagtcagctgaaccttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatc 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6915442 cgggacttccagtcagctgaaccttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataactaactacaccatc 6915343  T
Q  249 cagaagtggttgtacccccgtgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccctcaaggtca 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915342 cagaagtggttgtacccccgtgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccctcaaggtca 6915243  T
Q  349 gcagctgaaatgttctcatcatcgctaagaaacgcttcagcaagtacatcatctacctctgacacaggttct 420  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6915242 gcagctgaaatgttctcatcatcactaagaaacgcttcagcaagtacatcatctacctctgacacagtttct 6915171  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 169 - 267
Target Start/End: Original strand, 10543505 - 10543603
Alignment:
Q  169 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 267  Q
    ||||| |||||||||||||||||| | ||||||||||||||| ||||| | ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  10543505 accttttcctcattcttggattggacgagagcataattactagcttcagttggacacggcaaataattaagtacaccatccaaaagtagttgtaacccc 10543603  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 169 - 267
Target Start/End: Original strand, 10471307 - 10471405
Alignment:
Q  169 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 267  Q
    ||||| ||||||||||| |||||| | ||||||||||||||| ||||| | ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  10471307 accttttcctcattcttagattggacgagagcataattactagcttcagttggacacggcaaataattaagtacaccatccaaaagtagttgtagcccc 10471405  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 169 - 267
Target Start/End: Complemental strand, 28106305 - 28106207
Alignment:
Q  169 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 267  Q
    ||||| ||| ||| ||| ||||||||||||| |||||||||| ||||||| ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  28106305 accttttccccatgcttagattggtcaagagtataattactagcttcaattggacacggcaaataattaattacaccatccaaaagtagttgtagcccc 28106207  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 187 - 267
Target Start/End: Original strand, 27966389 - 27966469
Alignment:
Q  187 gattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 267  Q
    ||||||||||||| |||||||||| ||||||| ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  27966389 gattggtcaagagtataattactagcttcaattggacacggcaaataattaattacaccatccaaaagtagttgtagcccc 27966469  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 169 - 267
Target Start/End: Original strand, 10859023 - 10859121
Alignment:
Q  169 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 267  Q
    ||||| ||| ||||||| |||| ||| |||| |||||||||||||||| | ||||| ||||||||| ||  ||||||||||| |||| |||||| ||||    
T  10859023 accttttccccattcttagatttgtcgagagaataattactaacttcagttggacagggcaaataattagttacaccatccaaaagtagttgtagcccc 10859121  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 336
Target Start/End: Original strand, 10492777 - 10492833
Alignment:
Q  280 gcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 336  Q
    |||||||||||||| ||||||| ||||||  |||||||||| |||||||||||||||    
T  10492777 gcactacccatgaaaaccggtacaaatttatgtgctatggttgccctacgaattgct 10492833  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 331
Target Start/End: Complemental strand, 28105402 - 28105350
Alignment:
Q  279 agcactacccatgaataccggtataaatttccgtgctatggtagccctacgaa 331  Q
    |||| ||||||||||||| |||||||| |||||||||||||| ||||||||||    
T  28105402 agcattacccatgaatactggtataaacttccgtgctatggtggccctacgaa 28105350  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 273 - 336
Target Start/End: Original strand, 10463585 - 10463648
Alignment:
Q  273 tttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 336  Q
    ||||| ||||||||||||||| |  |||||||||||||||||||| || || ||||||||||||    
T  10463585 tttgaaagcactacccatgaaaaatggtataaatttccgtgctatcgtggctctacgaattgct 10463648  T

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Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 273 - 320
Target Start/End: Original strand, 10507349 - 10507396
Alignment:
Q  273 tttgacagcactacccatgaataccggtataaatttccgtgctatggt 320  Q
    ||||| |||||| ||||||||||| |||||||||||||||||||||||    
T  10507349 tttgaaagcactgcccatgaatacgggtataaatttccgtgctatggt 10507396  T

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Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 336
Target Start/End: Original strand, 10860707 - 10860758
Alignment:
Q  285 acccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 336  Q
    |||||||||||| |||||||||||||||||||||||  ||||||||| ||||    
T  10860707 acccatgaatactggtataaatttccgtgctatggtgaccctacgaactgct 10860758  T

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Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 336
Target Start/End: Original strand, 10474161 - 10474223
Alignment:
Q  274 ttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 336  Q
    |||| |||||| ||||||||||  |||||||| |||||||||||||| |||||||||| ||||    
T  10474161 ttgaaagcactgcccatgaatattggtataaacttccgtgctatggtggccctacgaactgct 10474223  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 336
Target Start/End: Complemental strand, 7476622 - 7476566
Alignment:
Q  280 gcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 336  Q
    |||||||||||||| ||||||| ||||||| ||||||| || |||||| ||||||||    
T  7476622 gcactacccatgaaaaccggtacaaatttctgtgctatagttgccctatgaattgct 7476566  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 336
Target Start/End: Original strand, 10848803 - 10848854
Alignment:
Q  285 acccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 336  Q
    |||||||||||| |||||||||||  |||||||||| |||||||||| ||||    
T  10848803 acccatgaatactggtataaatttgtgtgctatggtggccctacgaactgct 10848854  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 9081413 - 9081351
Alignment:
Q  188 attggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatcca 250  Q
    ||||||| || |||||||||||  ||||||| ||||| ||||||||| ||| |||||||||||    
T  9081413 attggtcgagcgcataattacttgcttcaattggacacggcaaataattaagtacaccatcca 9081351  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 336
Target Start/End: Complemental strand, 7478788 - 7478731
Alignment:
Q  279 agcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 336  Q
    |||||| |||||||| |||||||||||||| |||||| |||| |||||| ||| ||||    
T  7478788 agcactgcccatgaagaccggtataaatttgcgtgctctggttgccctaagaactgct 7478731  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 10505487 - 10505551
Alignment:
Q  196 agagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttg 260  Q
    ||||||||||||||| ||||| | ||||| ||||||||| |||  |||||||||| |||| ||||    
T  10505487 agagcataattactagcttcagttggacacggcaaataattaagcacaccatccaaaagtagttg 10505551  T

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Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 169 - 267
Target Start/End: Original strand, 15044800 - 15044898
Alignment:
Q  169 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 267  Q
    ||||||||||| || || ||||||||||| ||||||||| |||||||||| ||||| ||||||||| ||| ||||||||||||||||||||||| ||||    
T  15044800 accttctcctccttattagattggtcaagggcataattattaacttcaattggacatggcaaataactaagtacaccatccagaagtggttgtatcccc 15044898  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 82 - 172
Target Start/End: Original strand, 15043971 - 15044061
Alignment:
Q  82 cttagatatgttaactgaccaaacttcctttgctccaacttgaaagccaatgctacaaggggcccatcgggacttccagtcagctgaacct 172  Q
    |||| |||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||| | |||| ||||| |||||    
T  15043971 cttaaatatgttagctgaccaaacttactttcctccaacttgaaagccaatgctacaaggggcccatcaggattaccaggcagctcaacct 15044061  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 269 - 340
Target Start/End: Original strand, 15045570 - 15045641
Alignment:
Q  269 tgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccct 340  Q
    ||||||||| ||||||||||||||||||||||||||||||||| || | ||||||||||||||| |||||||    
T  15045570 tgtttttgaaagcactacccatgaataccggtataaatttccgcgccacggtagccctacgaatggctccct 15045641  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 367 - 420
Target Start/End: Original strand, 15047553 - 15047606
Alignment:
Q  367 tcatcgctaagaaacgcttcagcaagtacatcatctacctctgacacaggttct 420  Q
    ||||| |||||||||||||| ||||||| |||||| ||||||||||||| ||||    
T  15047553 tcatcactaagaaacgcttccgcaagtatatcatcaacctctgacacagtttct 15047606  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 84
Target Start/End: Original strand, 15043819 - 15043854
Alignment:
Q  49 aaatcacccttccgaatgacgccctcataaactctt 84  Q
    ||||||||||||||||||||||||||||||| ||||    
T  15043819 aaatcacccttccgaatgacgccctcataaattctt 15043854  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 335
Target Start/End: Original strand, 44307022 - 44307073
Alignment:
Q  284 tacccatgaataccggtataaatttccgtgctatggtagccctacgaattgc 335  Q
    |||||||||| |  |||| |||||||||||||||||| ||||||||||||||    
T  44307022 tacccatgaaaattggtacaaatttccgtgctatggttgccctacgaattgc 44307073  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 267
Target Start/End: Original strand, 33601026 - 33601124
Alignment:
Q  169 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 267  Q
    ||||| ||||||||||| ||||||   |||||||||||| |  ||||| | ||||| ||||||| | |||  |||||||||| ||||||||||| ||||    
T  33601026 accttttcctcattcttagattggatgagagcataattagttgcttcagttggacacggcaaattattaagcacaccatccaaaagtggttgtagcccc 33601124  T

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