View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12777_low_3 (Length: 249)
Name: NF12777_low_3
Description: NF12777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12777_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 4677133 - 4676890
Alignment:
| Q |
1 |
gtgttttctgtagttatctatctactttataattgcatttgcctttaaaagtgttacaaaatattcattacagcatttcatttgttttttaatccattga |
100 |
Q |
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| T |
4677133 |
gtgttttctgtagttatctatctactttataattgcatttgcctttaaaagtgttacaaaatattcattacagcatttcatttgtttgttaatccattga |
4677034 |
T |
|
| Q |
101 |
ttatcgatcattatagctatacctgtgtcaaatttatttgtttctgcagtgtccaaactgcaatgtgtattgaacatttgaacaatgaatatcaattatt |
200 |
Q |
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| T |
4677033 |
ttatcgatcattatagctatacccgtgtcaaatttatttgtttctgcagtgtccaaactgcaatgtgtattgaacatttgaacaatgaatatcaattatt |
4676934 |
T |
|
| Q |
201 |
tgtcatttatattggtcaaattacgtttttggtctctctgcttc |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4676933 |
tgtcatttatattggtcaaattacgtttttggtctctctgcttc |
4676890 |
T |
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