View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12778_low_1 (Length: 449)
Name: NF12778_low_1
Description: NF12778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12778_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 123 - 435
Target Start/End: Original strand, 9123100 - 9123410
Alignment:
| Q |
123 |
agacgttggcagtgataaataaaccagacaagtaattgaggaataatgagtggataaaatttcattatatatattgaatatgaatataatttcttacatg |
222 |
Q |
| |
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||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
9123100 |
agacgttggcagtaataaagaaaccagacaagcaattgaggaataatgagtggataaaatttcattatatatattgaatatgaatataaattcttacatg |
9123199 |
T |
|
| Q |
223 |
acagttccttcctataatacatgcattacaatcagctgcaatcattcctatcgataaaaagctaattaatcgagaatgataatttctccttcttcccaat |
322 |
Q |
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| ||||||||||| | ||| || ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9123200 |
a-agttccttcctttgata-atacattacaatcagctgcagtcattcctaaatataaaaagctaattaatcgagaatgataatttctccttcttcccaat |
9123297 |
T |
|
| Q |
323 |
ctctgctaagaaatttctcctcgttcaaatctgtaactcccattatctcatcctttagaaccaaccctacaaatgtcttcaatggattcaacttgttgca |
422 |
Q |
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||||| |||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9123298 |
ctctgttaagaaatttctcctcattcaaatctgtaactcccataatatcatcctttagaaccaaccctacaaatgtcttcaatggattcaacttgttgca |
9123397 |
T |
|
| Q |
423 |
atcttgcagtgaa |
435 |
Q |
| |
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|||||||| |||| |
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| T |
9123398 |
atcttgcaatgaa |
9123410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 123 - 435
Target Start/End: Original strand, 9131207 - 9131517
Alignment:
| Q |
123 |
agacgttggcagtgataaataaaccagacaagtaattgaggaataatgagtggataaaatttcattatatatattgaatatgaatataatttcttacatg |
222 |
Q |
| |
|
||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
9131207 |
agacgttggcagtaataaagaaaccagacaagcaattgaggaataatgagtggataaaatttcattatatatattgaatatgaatataaattcttacatg |
9131306 |
T |
|
| Q |
223 |
acagttccttcctataatacatgcattacaatcagctgcaatcattcctatcgataaaaagctaattaatcgagaatgataatttctccttcttcccaat |
322 |
Q |
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| ||||||||||| | ||| || ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9131307 |
a-agttccttcctttgata-atacattacaatcagctgcagtcattcctaaatataaaaagctaattaatcgagaatgataatttctccttcttcccaat |
9131404 |
T |
|
| Q |
323 |
ctctgctaagaaatttctcctcgttcaaatctgtaactcccattatctcatcctttagaaccaaccctacaaatgtcttcaatggattcaacttgttgca |
422 |
Q |
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||||| |||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9131405 |
ctctgttaagaaatttctcctcattcaaatctgtaactcccataatatcatcctttagaaccaaccctacaaatgtcttcaatggattcaacttgttgca |
9131504 |
T |
|
| Q |
423 |
atcttgcagtgaa |
435 |
Q |
| |
|
|||||||| |||| |
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|
| T |
9131505 |
atcttgcaatgaa |
9131517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 9123039 - 9123089
Alignment:
| Q |
23 |
aaacatcaaataaagacattggcagtaatatctacaagagtaactgataat |
73 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
9123039 |
aaacatcaaataaagacattggcagtaataactataagagtaactgataat |
9123089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 9131146 - 9131196
Alignment:
| Q |
23 |
aaacatcaaataaagacattggcagtaatatctacaagagtaactgataat |
73 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
9131146 |
aaacatcaaataaagacattggcagtaataactataagagtaactgataat |
9131196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 156 - 435
Target Start/End: Original strand, 24524997 - 24525278
Alignment:
| Q |
156 |
aattgaggaataatgagtggataaaatttcattatatatattgaatatgaatataatttcttacatgacagttccttcctat---aatacatgcattaca |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| | |
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| T |
24524997 |
aattgaggaataatgagtggataaaatttcattatatatattgaatatgaatataatttcttacatga-agttccttcctatgataatacatgcattgta |
24525095 |
T |
|
| Q |
253 |
atcagctgcaatcattcctatcgataaaaagctaattaatcgagaatgataatttctccttcttcccaatctctgctaagaaatttctcctcgttcaaat |
352 |
Q |
| |
|
|| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| ||||||| |
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| T |
24525096 |
attagctacaatcattcctaaagataaaaagctaattaatcgagaatgataatttctccatcttcccaatctctgttaagaaacttctcctcattcaaat |
24525195 |
T |
|
| Q |
353 |
ctgtaactcccattatctcatcctttagaaccaaccctacaaatgtcttcaatggattcaacttgttgcaatcttgcagtgaa |
435 |
Q |
| |
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| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
24525196 |
cattcactcccataatctcatcctttagaaccaaccctacaaatgtcttcaatggattcaacttgttgcaatcttgcaatgaa |
24525278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 24524921 - 24524967
Alignment:
| Q |
61 |
agtaactgataattgaccatctatatagtatgagttgcagtgacttgatat |
111 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
24524921 |
agtaactgataattgaccatctat----tatgagttgcagtgacttcatat |
24524967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 259 - 396
Target Start/End: Complemental strand, 9039096 - 9038960
Alignment:
| Q |
259 |
tgcaatcattcctatcgataaaaagctaattaatcgagaatgataatttctccttcttcccaatctctgctaagaaatttctcctcgttcaaatctgtaa |
358 |
Q |
| |
|
|||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| | |
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|
| T |
9039096 |
tgcagtcattcctaaagataaaaaactaattaatcgagaatgataatttctccttcttcccaat-tctgttaagaaatttctcctcgttcaaatctgtca |
9038998 |
T |
|
| Q |
359 |
ctcccattatctcatcctttagaaccaaccctacaaat |
396 |
Q |
| |
|
||||||| ||||||||||||| ||||||||| |||||| |
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|
| T |
9038997 |
ctcccataatctcatcctttaaaaccaaccccacaaat |
9038960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 276 - 317
Target Start/End: Complemental strand, 39815150 - 39815109
Alignment:
| Q |
276 |
ataaaaagctaattaatcgagaatgataatttctccttcttc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
39815150 |
ataaaaagctaattaatcgagaatgataacttctccttcttc |
39815109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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