View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12778_low_2 (Length: 421)
Name: NF12778_low_2
Description: NF12778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12778_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 5 - 406
Target Start/End: Complemental strand, 38301465 - 38301054
Alignment:
| Q |
5 |
taggagtagttaatgtgacacacttgatgcataactaggtccgagttaggtttctctcacctcacatgactaaaaatatacaataatagacggaaaaact |
104 |
Q |
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| T |
38301465 |
taggagtagttaatgtgacacacttgatgcataactaggtccgagttaggtttctctcacctcacatgactaaaaatatacaataatagacggaaaaact |
38301366 |
T |
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| Q |
105 |
caaataaattgttaannnnnnngtttgaatattttcgtcttcaattggaattttttcgaacatgatctcaactcatttgatacagcttaaataacttaat |
204 |
Q |
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| T |
38301365 |
caaacaaattgttactttttttgtttgaatctttctgtcttcaattggaattttttcaaacatgatctcaactcatttgatacagcttaaacaacttaat |
38301266 |
T |
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| Q |
205 |
tataatcgttatatttaatctaatgattaatatatcgctagaaagatatggtacaaaagaatccgagttcaataatactaatataggataaaactagcat |
304 |
Q |
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| T |
38301265 |
tgtaatcgttatatttaatctaatgatcaatatttggctagaaagacatggtac-aaagaatccgagttcaataatactaatataggataaaactagcat |
38301167 |
T |
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| Q |
305 |
cta-----------atgtctatgttttaataaaaatatcatgaaagttgggatttgattggcaattatgtaaaagtagttatgagtagtttcaatcataa |
393 |
Q |
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| T |
38301166 |
ctaatgtcatagacatgtctatgttttaataaaaatatcatgaaagttgggatttgattggcaattatgtaaaagtagttatgagtagtttgaatcataa |
38301067 |
T |
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| Q |
394 |
tgaaaaagaacat |
406 |
Q |
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| T |
38301066 |
tgaaaaagaacat |
38301054 |
T |
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