View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12778_low_3 (Length: 367)
Name: NF12778_low_3
Description: NF12778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12778_low_3 |
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| [»] chr3 (5 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 367
Target Start/End: Complemental strand, 53491937 - 53491588
Alignment:
| Q |
18 |
aggaatctgccttaatatatgcatctttggcatctgtaatgagtatttgaggcctttcctcctgttcaattttcctaggcatttattccaaacactggtt |
117 |
Q |
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| T |
53491937 |
aggaatctgccttaatatatgcatctttggcatctgtaatgagtatttgaggcctttcctcctgttcaattttcctaggcatttattccaaacactggtt |
53491838 |
T |
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| Q |
118 |
gtgggatacaaggtgcaactacccattgtttgagacaaaagtttgctgaaaagttcgaggtaaaatttgaagatatgaagggagagaaagcaatggtttg |
217 |
Q |
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| T |
53491837 |
gtgggatacaaggtgcaactacccattgtttgagacaaaagtttgctgaaaagttcgaggtaaaatttgaagatatgaagggagagaaagcaatggtttg |
53491738 |
T |
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| Q |
218 |
gcagaattcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaatggaaggattcctcttatgtacgattgcatttatattt |
317 |
Q |
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| T |
53491737 |
gcagaattcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaatggaaggattcctcttatgtacgattgcatttatattt |
53491638 |
T |
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| Q |
318 |
ttgtccgcttttttaacagattggagcgatggtgatggttcatggtgatg |
367 |
Q |
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| T |
53491637 |
ttgtccgcttttttaacagattggagcgatggtgatggttcatggtgatg |
53491588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 80 - 367
Target Start/End: Complemental strand, 53499468 - 53499181
Alignment:
| Q |
80 |
tgttcaattttcctaggcatttattccaaacactggttgtgggatacaaggtgcaactacccattgtttgagacaaaagtttgctgaaaagttcgaggta |
179 |
Q |
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| T |
53499468 |
tgttcagttttcctaggcatttattccaaacactggttgtgggatacaaggtgcaactacccattgcttgggacaaaagtttgctgaaaagttcgaggta |
53499369 |
T |
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| Q |
180 |
aaatttgaagatatgaagggagagaaagcaatggtttggcagaattcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaa |
279 |
Q |
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| T |
53499368 |
aaatttgaagataagaagggagagaaagcaatggtttggcagaactcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaa |
53499269 |
T |
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| Q |
280 |
tggaaggattcctcttatgtacgattgcatttatatttttgtccgcttttttaacagattggagcgatggtgatggttcatggtgatg |
367 |
Q |
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| T |
53499268 |
tggaagaactccttttatgtacgattgcatttatattttagtccgcttatttaacagattggagcaatggtgatggttcatggcgatg |
53499181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 80 - 266
Target Start/End: Complemental strand, 16070576 - 16070390
Alignment:
| Q |
80 |
tgttcaattttcctaggcatttattccaaacactggttgtgggatacaaggtgcaactacccattgtttgagacaaaagtttgctgaaaagttcgaggta |
179 |
Q |
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| T |
16070576 |
tgttcaatttttctaggcttttattccaaacattggtcgtgggatacaaggtgcagctacccattgtttgggacaaaagtttgctgagaagtttgagata |
16070477 |
T |
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| Q |
180 |
aaatttgaagatatgaagggagagaaagcaatggtttggcagaattcatggggctattctactcgaactgtaagcttttaatgtcta |
266 |
Q |
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| T |
16070476 |
aactttgaagataagaaggtagagaaaacaatggtttggcagaactcatgggggttttctactcgaactgtaagctttcaatgtcta |
16070390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 53499936 - 53499888
Alignment:
| Q |
18 |
aggaatctgccttaatatatgcatctttggcatctgtaatgagtatttg |
66 |
Q |
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| T |
53499936 |
aggaatctgccttactatatgcatttttggcatctgtaatgagtctttg |
53499888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 367
Target Start/End: Complemental strand, 16070303 - 16070267
Alignment:
| Q |
331 |
taacagattggagcgatggtgatggttcatggtgatg |
367 |
Q |
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| T |
16070303 |
taacagattggagtgatggtgatggttcatggtgatg |
16070267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 89 - 367
Target Start/End: Original strand, 45354908 - 45355184
Alignment:
| Q |
89 |
ttcctaggcatttattccaaacactggttgtgggatacaaggtgcaactacccattgtttgagacaaaagtttgctgaaaagttcgaggtaaaatttgaa |
188 |
Q |
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| T |
45354908 |
ttcctaggcatttattccaaacactggtcgtggtatacaaggtgcaacttctcattgtttgggacaaaattttgctaaaatgtttgagataaactatgaa |
45355007 |
T |
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| Q |
189 |
gatatgaagggagagaaagcaatggtttggcagaattcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaatggaaggat |
288 |
Q |
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| T |
45355008 |
aatgagaagggagagaaagcaatggtctggcagaactcgtgggcctatagtactcgaactgtaagc-tttaatttcttcaatatacatgcattgcaatat |
45355106 |
T |
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| Q |
289 |
tcctcttatgtacgattgcatttatatttttgtccgcttttttaacagattggagcgatggtgatggttcatggtgatg |
367 |
Q |
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| T |
45355107 |
tggtc-taaatatgattgcattaacgtttctttgcgctttttcaacagattggggtgatggtgatggttcatggtgatg |
45355184 |
T |
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