View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12778_low_4 (Length: 309)
Name: NF12778_low_4
Description: NF12778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12778_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 41697832 - 41698067
Alignment:
| Q |
1 |
ataaagcaattttatttgaattcgagaacaaaatatgaatatgaatacaaacgcttacgtgtgaccaacaagaacaacatttgcatcctcattgtgtgct |
100 |
Q |
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| T |
41697832 |
ataaagcaattttatttgaattcgagaacaaaatatgaatatgaatacaaacgcttacgtgtgaccaacaagaacaacatttgcatcctcattgtgtgct |
41697931 |
T |
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| Q |
101 |
gcaattgccatagattcatcaacaacaagaactgtagaacactcgtttgaggaatcatcttctaaacttttcaatccttctttcggaacaaatgcaagaa |
200 |
Q |
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| T |
41697932 |
gcaattgccatagattcatcaacaacaagaactgtagaacactcatttgaggaatcatcttctaaacttttcaatccttctttcggaacaaatgcaagaa |
41698031 |
T |
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| Q |
201 |
tttccttcttgaaattaataagtaaaatctgctcac |
236 |
Q |
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| T |
41698032 |
tttccttcttgaaattaataagtaaaatctgctcac |
41698067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 294
Target Start/End: Original strand, 41698097 - 41698128
Alignment:
| Q |
263 |
ttactattaattatacatacatgcaataacat |
294 |
Q |
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| T |
41698097 |
ttactattaattatacatacatgcaataacat |
41698128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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