View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12778_low_5 (Length: 301)

Name: NF12778_low_5
Description: NF12778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12778_low_5
NF12778_low_5
[»] chr4 (5 HSPs)
chr4 (18-291)||(17435448-17435726)
chr4 (18-91)||(30305828-30305901)
chr4 (18-93)||(4513408-4513483)
chr4 (18-91)||(3161051-3161124)
chr4 (18-91)||(39401030-39401103)
[»] chr1 (3 HSPs)
chr1 (18-91)||(12613206-12613279)
chr1 (18-91)||(13763790-13763863)
chr1 (29-89)||(13152942-13153002)
[»] chr3 (2 HSPs)
chr3 (18-91)||(46767372-46767445)
chr3 (18-91)||(25883956-25884029)
[»] chr7 (2 HSPs)
chr7 (18-89)||(18503448-18503519)
chr7 (54-95)||(47663381-47663422)
[»] chr5 (1 HSPs)
chr5 (34-89)||(37636844-37636899)
[»] chr8 (2 HSPs)
chr8 (18-92)||(33810668-33810742)
chr8 (49-93)||(32944949-32944993)
[»] chr6 (1 HSPs)
chr6 (21-93)||(20846073-20846145)
[»] chr2 (2 HSPs)
chr2 (49-93)||(12413517-12413561)
chr2 (49-93)||(12425577-12425621)


Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 17435448 - 17435726
Alignment:
Q  18 agctcacacattttacatgtagagaagtgacgtgtacggggtttgaacttcagcccctgtatatattatgcattgttctactaacagagtt-----cacg 112  Q
    |||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||    
T  17435448 agctcacacattttacatgtagagaagtggggtgtgcggggtttgaacttcagcccctgtatatattatgcattgttctactaacagagtttagctcacg 17435547  T
Q  113 gagtgtttgtaattttcgttttatgtatataatttattaacagtgttactcgtactcacannnnnnnctataagctacccgtatacttcacatgataaac 212  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  17435548 gagtgtttgtaattttcgttgtatgtatataatttattaacagtgttactcgtactcacatttttttctataagctacccgtatacttcacatgataaac 17435647  T
Q  213 gtacgacacatatttcaaaattaaattgttataacattatgtgaaagaaaagtctttaacatttacgaaatcagtgaac 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  17435648 gtacgacacatatttcaaaattaaattgttataacattatgtgaaagaaaagtctttaacatttacgaaatcattgaac 17435726  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 30305901 - 30305828
Alignment:
Q  18 agctcacacattttacatgtagagaagtgacgtgtacggggtttgaacttcagcccctgtatatattatgcatt 91  Q
    ||||||||||||||| |||| ||||||||| |||| ||||||| ||||  ||||||||| |||||  |||||||    
T  30305901 agctcacacattttaaatgtggagaagtgaggtgtccggggttcgaaccccagcccctgcatataaaatgcatt 30305828  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 4513408 - 4513483
Alignment:
Q  18 agctcacacattttacatgtagagaagtgacgtgtacggggtttgaacttcagcccctgtatatattatgcattgt 93  Q
    ||||||||||||||| |||| ||||||||| ||| | | |||| |||||||| ||| | |||||||||| ||||||    
T  4513408 agctcacacattttaaatgtggagaagtgaggtggatgaggttcgaacttcaacccttctatatattatacattgt 4513483  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 3161124 - 3161051
Alignment:
Q  18 agctcacacattttacatgtagagaagtgacgtgtacggggtttgaacttcagcccctgtatatattatgcatt 91  Q
    ||||||||||||||| |||| ||||||||| |||| |||| || ||||| |||||| | ||||||  |||||||    
T  3161124 agctcacacattttaaatgtggagaagtgaagtgtccgggattcgaactacagcccgtatatataaaatgcatt 3161051  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 39401103 - 39401030
Alignment:
Q  18 agctcacacattttacatgtagagaagtgacgtgtacggggtttgaacttcagcccctgtatatattatgcatt 91  Q
    ||||||||||| ||  |||| ||||||||  |||| | |||||||||||||  |||||| ||||||||||||||    
T  39401103 agctcacacatatttaatgtggagaagtgtggtgttcagggtttgaacttcgacccctgcatatattatgcatt 39401030  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 12613279 - 12613206
Alignment:
Q  18 agctcacacattttacatgtagagaagtgacgtgtacggggtttgaacttcagcccctgtatatattatgcatt 91  Q
    ||||||||||||||| |||||||||||||  |||| ||||||| ||   || ||||||||||||||||||||||    
T  12613279 agctcacacattttaaatgtagagaagtggggtgtccggggttcgattctcggcccctgtatatattatgcatt 12613206  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 13763863 - 13763790
Alignment:
Q  18 agctcacacattttacatgtagagaagtgacgtgtacggggtttgaacttcagcccctgtatatattatgcatt 91  Q
    ||||||||||||||| |||||||||||||  || | ||||||| ||||  ||||||||| |||||  |||||||    
T  13763863 agctcacacattttaaatgtagagaagtggggtatccggggttcgaaccccagcccctgcatataaaatgcatt 13763790  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 13153002 - 13152942
Alignment:
Q  29 tttacatgtagagaagtgacgtgtacggggtttgaacttcagcccctgtatatattatgca 89  Q
    |||| |||| ||||||||| |||| ||||| ||||||| || ||| |||||||||||||||    
T  13153002 tttaaatgtggagaagtgaggtgtccggggattgaactccaacccatgtatatattatgca 13152942  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 46767445 - 46767372
Alignment:
Q  18 agctcacacattttacatgtagagaagtgacgtgtacggggtttgaacttcagcccctgtatatattatgcatt 91  Q
    ||||||||||||||| |||| ||||||||   ||| |||||||||||| |||||||||| |||||  |||||||    
T  46767445 agctcacacattttaaatgtggagaagtgggatgtccggggtttgaacctcagcccctgcatataaaatgcatt 46767372  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 25883956 - 25884029
Alignment:
Q  18 agctcacacattttacatgtagagaagtgacgtgtacggggtttgaacttcagcccctgtatatattatgcatt 91  Q
    ||||||||||||||| |||| ||||||||  |||| ||||||| ||||  |  |||||| ||||||||||||||    
T  25883956 agctcacacattttaaatgtggagaagtggggtgtccggggttcgaaccccgacccctgcatatattatgcatt 25884029  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 18503448 - 18503519
Alignment:
Q  18 agctcacacattttacatgtagagaagtgacgtgtacggggtttgaacttcagcccctgtatatattatgca 89  Q
    ||||||||||||||| |||| ||||||||  ||||  |||||| |||| |||||||||| ||||| ||||||    
T  18503448 agctcacacattttaaatgtggagaagtggggtgtctggggttcgaacctcagcccctgcatataatatgca 18503519  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 47663381 - 47663422
Alignment:
Q  54 cggggtttgaacttcagcccctgtatatattatgcattgttc 95  Q
    ||||||||||||||||| || |||||||||||| ||||||||    
T  47663381 cggggtttgaacttcagaccttgtatatattatacattgttc 47663422  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 37636844 - 37636899
Alignment:
Q  34 atgtagagaagtgacgtgtacggggtttgaacttcagcccctgtatatattatgca 89  Q
    |||| ||||||||| || |||||||||||||| |||||||||| ||| ||||||||    
T  37636844 atgtggagaagtgaggtatacggggtttgaacctcagcccctgcataaattatgca 37636899  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 33810742 - 33810668
Alignment:
Q  18 agctcacacattttacatgtagagaagtgacgtgtacggggtttgaacttcagcccctgtatatattatgcattg 92  Q
    ||||||||||||||| |||| ||||||||  |||| ||||||||||||  | ||||||| |||||  ||||||||    
T  33810742 agctcacacattttaaatgtggagaagtggggtgtccggggtttgaaccccggcccctgcatataaaatgcattg 33810668  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 32944993 - 32944949
Alignment:
Q  49 gtgtacggggtttgaacttcagcccctgtatatattatgcattgt 93  Q
    |||| ||||||||||||||||| || || ||||||||||||||||    
T  32944993 gtgtgcggggtttgaacttcagaccttgcatatattatgcattgt 32944949  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 20846145 - 20846073
Alignment:
Q  21 tcacacattttacatgtagagaagtgacgtgtacggggtttgaacttcagcccctgtatatattatgcattgt 93  Q
    |||||||||||| |||||||||||||  |||||  ||||| ||||  || || ||| ||||||||||||||||    
T  20846145 tcacacattttaaatgtagagaagtgtggtgtatagggttcgaaccccaaccactgcatatattatgcattgt 20846073  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 12413561 - 12413517
Alignment:
Q  49 gtgtacggggtttgaacttcagcccctgtatatattatgcattgt 93  Q
    ||||||||||||||||| |||| || || ||||||||||||||||    
T  12413561 gtgtacggggtttgaacctcagaccttgcatatattatgcattgt 12413517  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 12425621 - 12425577
Alignment:
Q  49 gtgtacggggtttgaacttcagcccctgtatatattatgcattgt 93  Q
    ||||||||||||||||| |||| || || ||||||||||||||||    
T  12425621 gtgtacggggtttgaacctcagaccttgcatatattatgcattgt 12425577  T

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