View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12779_high_1 (Length: 728)
Name: NF12779_high_1
Description: NF12779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12779_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 425 - 712
Target Start/End: Original strand, 26880754 - 26881041
Alignment:
| Q |
425 |
tgcatgaatgtaagaaacaaagcaaacttgtcagttaatgaagaccaagaaccaattacgacacgtacctgaacaaatataattttaagaacaattaatc |
524 |
Q |
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| T |
26880754 |
tgcatgaatgtaagaaacaaagcaaacttgtcagttaatgaagaccaagaacaaatcacgatacgtacctgaacacatacaattttaagaagaattaatc |
26880853 |
T |
|
| Q |
525 |
acctaaggctcactaccatcagggttgaaaatcctcatcgtatagtcagtgccattgataccaggcaagacaaatataactccatcagcaccaacactga |
624 |
Q |
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|||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
26880854 |
acctcaggctcactaccatcagagttgaaaatcctcattgtatagtcagtgccattgataccaggcaagacaaatataacttcatctgcaccaacactga |
26880953 |
T |
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| Q |
625 |
agttacgatcacagagttgcacagctttcacggaactaatctttggctcagaagagtctctattatcaatctattcataagagaaaat |
712 |
Q |
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| T |
26880954 |
agttacgatcacagagttgcacaactttctcggaactaatctttggctcagaagagtctctattatcgatctattcataagagaaaat |
26881041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 195 - 402
Target Start/End: Original strand, 26880547 - 26880754
Alignment:
| Q |
195 |
cattactggtatcatcaaaatacaaaactttcatcagtgaaaattaaatgcttcggaaaaaacttgccctaaaaacacaacaccgcaagcaacaagacat |
294 |
Q |
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| T |
26880547 |
cattactgttatcatcaaaatacaaaacttttatcagtgaaaattaaatgcttcggaaaaaacttgccctaaaaacacaacaccgcaagcaacaagacat |
26880646 |
T |
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| Q |
295 |
aaaaattaagatggtaagagtttatggaaatgaacatacctatgcctcccatataaactctcaagctgagaaacaaatttagcaaagcatcgcactccat |
394 |
Q |
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| T |
26880647 |
gaaaattaagatggtaagagtttatggaaatgaacatacctatgcctcccctataaactctcaagctgagaaacaaatttagcaaagcatcgcactccat |
26880746 |
T |
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| Q |
395 |
tgccacat |
402 |
Q |
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|||||||| |
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| T |
26880747 |
tgccacat |
26880754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 11 - 147
Target Start/End: Original strand, 26880410 - 26880546
Alignment:
| Q |
11 |
atttcttctcgacattaaactacttcaggactttacaacagataaaaaggcacaaaggaaacaccatgctgatggtgaaactacaaagtatgaaaataca |
110 |
Q |
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| T |
26880410 |
atttcttctcgacattaaaccacttcaggactttacaacagataaaaaggcacaaaggaaacaccatgctgatggtgaaactacaaagtatgaaaataca |
26880509 |
T |
|
| Q |
111 |
atgtaagacgaaatttcaagagtatctataatgactg |
147 |
Q |
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| T |
26880510 |
atgtaagacgaaatttcaagagtatctataatgactg |
26880546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 525 - 704
Target Start/End: Original strand, 40252464 - 40252643
Alignment:
| Q |
525 |
acctaaggctcactaccatcagggttgaaaatcctcatcgtatagtcagtgccattgataccaggcaagacaaatataactccatcagcaccaacactga |
624 |
Q |
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|||| ||||||||||||||||| ||||||||||||||| ||||| ||||| |||| |||||||||||| ||||| |||||||||||||||||||||| | |
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| T |
40252464 |
acctcaggctcactaccatcagagttgaaaatcctcattgtataatcagtaccatcgataccaggcaatacaaagataactccatcagcaccaacaccaa |
40252563 |
T |
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| Q |
625 |
agttacgatcacagagttgcacagctttcacggaactaatctttggctcagaagagtctctattatcaatctattcataa |
704 |
Q |
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| T |
40252564 |
agttacgatcacatagttgtacagctttctctgaactaatctttggctcagaagagtctctattatcaatctattcataa |
40252643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 322 - 416
Target Start/End: Original strand, 40251754 - 40251848
Alignment:
| Q |
322 |
aaatgaacatacctatgcctcccatataaactctcaagctgagaaacaaatttagcaaagcatcgcactccattgccacatatcaaaggacaaag |
416 |
Q |
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| T |
40251754 |
aaatgaacaaacctgtgcctcccatgtaaactctcaagctgagaaacaaatttggcaaagcatcgcactccattgccacacatctaaggaaaaag |
40251848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 40250196 - 40250245
Alignment:
| Q |
82 |
atggtgaaactacaaagtatgaaaatacaatgtaagacgaaatttcaaga |
131 |
Q |
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| T |
40250196 |
atggtgaaactgcaaaatatgaaaatataatgtaagacgaaatttcaaga |
40250245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 40707441 - 40707502
Alignment:
| Q |
82 |
atggtgaaactacaaagtatgaaaatacaatgtaagacgaaatttcaagagtatctataatg |
143 |
Q |
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||||||||||||||||||||||||||| |||||||||| ||||| |||| ||||||||||| |
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| T |
40707441 |
atggtgaaactacaaagtatgaaaatataatgtaagacagaattttaagaatatctataatg |
40707502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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