View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12779_high_2 (Length: 639)
Name: NF12779_high_2
Description: NF12779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12779_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 560; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 19 - 634
Target Start/End: Complemental strand, 31940774 - 31940158
Alignment:
| Q |
19 |
ctgttgtcattgcaatgaaagatgtcagcagtttttt-atgaatgaatgttttatatttcaatgtgttcatgctaaatatcaagcttacctagagtaaga |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31940774 |
ctgttgtcattgcaatgaaagatgtcagcagtttttttatgaatgaatgttttatatttcaatgtgttcatactaaatatcaagcttacctagagtaaga |
31940675 |
T |
|
| Q |
118 |
ttcacacaatctctatttatcagctaaaatgtactggctgcatatatatgaactgcattttgtctcactctggtcttttttataactagaattgtgtatg |
217 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31940674 |
ttcacacaatctctacttatcagctaaaatgtactggctgcatatatatgaactgcattttgtctcactctggtcttttttataactagaattgtgtatg |
31940575 |
T |
|
| Q |
218 |
tggtcattgcatgttgttacatgtcatatggttagaaaatctgtcttgcttccttcatcagtaaactgaactggtgttgaatcttgtgttttctactcca |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31940574 |
tggtcattgcatgttgttacatgtcatatggttagaaaatctgtcttgcttccttcatcagtaaactgaactggtgttgaatcttgtgttttctactcca |
31940475 |
T |
|
| Q |
318 |
gagatggcgaattattctgctgactatcatagtgcaccaagtggtatgctgtatgatcacaggcctttgaaattaaataccgatgactatgagagagttt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31940474 |
gagatggcgaattattctgctgactatcatagtgcaccaagtggtatgctgtatgatcacaggcctttgaaattaaataccgatgactatgagagagttt |
31940375 |
T |
|
| Q |
418 |
gccacattccaaagaagaaggtaccgtatcttgaattgatattatgtagtactattattttatctttgttgctctatgtaaattttaattgtgcttgctt |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31940374 |
gccacattccaaagaagaaggtaccgtatcttgaattgatattatgtagtactgtcattttatctttgttgctctatgtaaattttaattgtgcttgctt |
31940275 |
T |
|
| Q |
518 |
gcccttttagggggcaaacttcagggacctcaagggagtgcttgttaaagnnnnnnnggtggaatgggacccctctgttgaaagagtgcatctaaaatct |
617 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
31940274 |
gcctttttagggggcaaacttcagggacctcaagggagtgcttgttaaagaaaaaaaggtggaatgggacccctctgttgaaagagtgtatctaaaatct |
31940175 |
T |
|
| Q |
618 |
ggaaagcctttgctact |
634 |
Q |
| |
|
|||||||||||| |||| |
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|
| T |
31940174 |
ggaaagcctttggtact |
31940158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 317 - 449
Target Start/End: Complemental strand, 13537012 - 13536880
Alignment:
| Q |
317 |
agagatggcgaattattctgctgactatcatagtgcaccaagtggtatgctgtatgatcacaggcctttgaaattaaataccgatgactatgagagagtt |
416 |
Q |
| |
|
|||||||| ||||||||| ||||||||| | | |||||||||| ||||| ||||||||| || ||| ||||||| | ||||| ||||||||||| |
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|
| T |
13537012 |
agagatggtgaattattcagctgactatgaaaacacaccaagtggaatgctatatgatcacttcccattggaattaaacaaagatgattatgagagagtc |
13536913 |
T |
|
| Q |
417 |
tgccacattccaaagaagaaggtaccgtatctt |
449 |
Q |
| |
|
|||||||||||| | |||||||| || |||||| |
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|
| T |
13536912 |
tgccacattccacacaagaaggttccctatctt |
13536880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 19 - 634
Target Start/End: Complemental strand, 9391111 - 9390510
Alignment:
| Q |
19 |
ctgttgtcattgcaatgaaagatgtcagcagttttttatgaatgaatgttttatatttcaatgtgttcatgctaaatatcaagcttacctagagtaagat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
9391111 |
ctgttgtcattgcaatgaaagatgtcagcagttttttatgaatgaatgttttatatttcaatgtgttcatactaaatatcaagcttacctagagtaagat |
9391012 |
T |
|
| Q |
119 |
tcacacaatctctatttatcagctaaaatgtactggctgcatatatatgaactgcattttgtctcactctggtcttttttataactagaattgtgtatgt |
218 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
9391011 |
tcatacaatctctatttatcagctaaaatgtactggctgcatatatatgaactgcattttgtcacactctggtcttttttataactagaattgtgtatgt |
9390912 |
T |
|
| Q |
219 |
ggtcattgcatgttgttacatgtc-----atatggttagaaaatctgtcttgcttccttcatcagtaaactgaactggtgttgaatcttgtgttttctac |
313 |
Q |
| |
|
|||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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|
| T |
9390911 |
ggtcattgcatgatgttacatgtcacattacatggttagaaaatctgtcttgcttccttcatcattaagctgaactggtgttgaatcttgtgttttctac |
9390812 |
T |
|
| Q |
314 |
tccagagatggcgaattattctgctgactatcatagtgcaccaagtggtatgctgtatgatcacaggcctttgaaattaaataccgatgactatgagaga |
413 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
9390811 |
tccagagatggtgaattattctgctgactctcaaagtgcaccaagtggtatgctgtatgatcacagacctttgaaattaaataccgatgactatgagaga |
9390712 |
T |
|
| Q |
414 |
gtttgccacattccaaagaagaaggtaccgtatcttgaattgatattatgtagtactattattttatctttgttgctctatgtaaattttaattgtgctt |
513 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||||||||| ||||| |||| |||||||||||||||||||||| |
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|
| T |
9390711 |
gtttgccacattccaaagaagaaggtatcatatcttgaattgatattat---gtactgttat----------------tatgtaaattttaattgtgctt |
9390631 |
T |
|
| Q |
514 |
gcttgcccttttagggggcaaacttcagggacctcaagggagtgcttgttaaagnnnnnnnggtggaatgggacccctctgttgaaagagtgcatctaaa |
613 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||| |
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|
| T |
9390630 |
gcttgcctttttagggggcaaacttcagggacctcaagggagtgcttgttaaagaaaacaaggtggaatgggacccctcagttgaaagagtgtatctaaa |
9390531 |
T |
|
| Q |
614 |
atctggaaagcctttgctact |
634 |
Q |
| |
|
|||||||||||||||| |||| |
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|
| T |
9390530 |
atctggaaagcctttggtact |
9390510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 23 - 634
Target Start/End: Complemental strand, 1338939 - 1338345
Alignment:
| Q |
23 |
tgtcattgcaatgaaagatgtcagcagtttttt-atgaatgaatgttttatatttcaatgtgttcatgctaaatatcaagcttacctagagtaagattca |
121 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||| | ||||||||||||| || |||||||||||||| |
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|
| T |
1338939 |
tgtcattgcaatgaaagatgtcagcggtttttttatgaatgaatgtttcatatttcaatgtgtttaaattaaatatcaagctcacttagagtaagattca |
1338840 |
T |
|
| Q |
122 |
cacaatctctatttatcagctaaaatgtactggctgcatatatatgaactgcattttgtctcactctggtcttttttataactagaattgtgtatgtggt |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||| |||||||||||||| |
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|
| T |
1338839 |
tacaatctctatttatcagctaaaatgtactggccgcat---------------tttgtcttactctggtcttttttataactaggattgtgtatgtggt |
1338755 |
T |
|
| Q |
222 |
cattgcatgttgttacatgtcatatggttagaaaatctgtcttgcttccttcatcagtaaactgaactggtgttgaatcttgtgttttctactccagaga |
321 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||| |||||||||| ||||||||| |||||||||||||||||| |
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|
| T |
1338754 |
cattgcatgttgttacatgtcacgtggttagaaaatttgtcttgcttccttcatcattaacctgaactggttttgaatcttatgttttctactccagaga |
1338655 |
T |
|
| Q |
322 |
tggcgaattattctgctgactatcatagtgcaccaagtggtatgctgtatgatcacaggcctttgaaattaaataccgatgactatgagagagtttgcca |
421 |
Q |
| |
|
||| |||||||| ||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1338654 |
tggtgaattatttggctgactctcaaagtgcaccaagtggtatgctgtatgatcataggcctttgaaattaaataccgatgactatgagagagtttgcca |
1338555 |
T |
|
| Q |
422 |
cattccaaagaagaaggtaccgtatcttgaattgatattatgtagtactattattttatctttgttgctctatgtaaattttaattgtgcttgcttgccc |
521 |
Q |
| |
|
|||||||||| ||||||| || |||||| |||||||||||| ||||| |||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
1338554 |
cattccaaaggagaaggttccctatctttaattgatattat---gtactgttattttatctttgttgctccatgtaaattctaattgtgcttgcttgcct |
1338458 |
T |
|
| Q |
522 |
ttttagggggcaaacttcagggacctcaagggagtgcttgttaaagnnnnnnnggtggaatgggacccctctgttgaaagagtgcatctaaaatctggaa |
621 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||| ||| || |||||||| ||||||||||||| | |
|
|
| T |
1338457 |
ttttagggggcaaacttcagggacctcaagggtgttcttgttaaagaaaataaggtggaatgggacccgtcttttaaaagagtgtatctaaaatctggga |
1338358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 134; Significance: 2e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 302 - 634
Target Start/End: Complemental strand, 5640563 - 5640231
Alignment:
| Q |
302 |
tgtgttttcta--ctccagagatggcgaattattctgctgactatcatagtgcaccaagtggtatgctgtatgatcacaggcctttgaaattaaataccg |
399 |
Q |
| |
|
||||||||||| ||| |||||||| |||||| | ||||||| | | ||||||||||||||| ||||||||||||||||||| | ||||||| || |
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|
| T |
5640563 |
tgtgttttctattctctagagatggtgaattacacagctgactctgaaagtgcaccaagtggtctgctgtatgatcacaggccatatctgttaaataacg |
5640464 |
T |
|
| Q |
400 |
atgactatgagagagtttgccacattccaaagaagaaggtaccgtatcttgaattgatattatgtagtactattattttatctttgttgctctatgtaaa |
499 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||| || |||||||||||||||||| || || |||||||||||||||||||| |||||| |
|
|
| T |
5640463 |
atgactatgagagagtttgcctcattccgaagaagaaggttcctgatcttgaattgatattat---gttctgttattttatctttgttgctccctgtaaa |
5640367 |
T |
|
| Q |
500 |
ttttaattgtgcttgcttgcc-cttttagggggcaaacttcagggacctcaagggagtgcttgttaaagnnnnnnnggtggaatgggacccctctgttga |
598 |
Q |
| |
|
|||||||||||| | |||||| |||||||||||||||||||||||||| ||||| |||||||| |||| ||||| ||||||||||||||||| |
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|
| T |
5640366 |
ttttaattgtgcattcttgccttttttagggggcaaacttcagggacctaaagggtgtgcttgtgaaagaaaaaaaagtggagtgggacccctctgttga |
5640267 |
T |
|
| Q |
599 |
aagagtgcatctaaaatctggaaagcctttgctact |
634 |
Q |
| |
|
||||||| |||| |||||||| ||||||||| |||| |
|
|
| T |
5640266 |
aagagtgtatctgaaatctgggaagcctttggtact |
5640231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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