View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12779_high_23 (Length: 283)
Name: NF12779_high_23
Description: NF12779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12779_high_23 |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 153 - 272
Target Start/End: Original strand, 12276822 - 12276941
Alignment:
| Q |
153 |
aattgttggttttatggaaatttattttgattgaaagcgaattgaatataaagacttcatannnnnnnnnnnngataatcaaacaacttcattaaacaac |
252 |
Q |
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| T |
12276822 |
aattgttggttttatggaaatttattttgattgaaagtgaattgaatataaagacttcatatttttattttttgataatcaaacaacttcattaaacaac |
12276921 |
T |
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| Q |
253 |
agaagtattacaagagacaa |
272 |
Q |
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| T |
12276922 |
agaagtattacaagagacaa |
12276941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 160
Target Start/End: Original strand, 21636447 - 21636516
Alignment:
| Q |
91 |
catggatgcaagattttcatgactaaagaatgaaggatatggtttagacacctgcatatggaaattgttg |
160 |
Q |
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| T |
21636447 |
catggattcaagatttttatcacttaagaatgagggatatggtttagatgcctgcataaggaaattgttg |
21636516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 283
Target Start/End: Original strand, 24359067 - 24359114
Alignment:
| Q |
236 |
caacttcattaaacaacagaagtattacaagagacaataacatcattc |
283 |
Q |
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| T |
24359067 |
caacttcgttatataacagaagcattacaagagacaataacatcattc |
24359114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 160
Target Start/End: Original strand, 22194225 - 22194294
Alignment:
| Q |
91 |
catggatgcaagattttcatgactaaagaatgaaggatatggtttagacacctgcatatggaaattgttg |
160 |
Q |
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| T |
22194225 |
catggattcaagattttcaacacttaagaatgagggatatggtttagacgcctgcataaggaaactgttg |
22194294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 2856999 - 2857040
Alignment:
| Q |
226 |
gataatcaaacaacttcattaaacaacagaagtattacaaga |
267 |
Q |
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| T |
2856999 |
gatattcaaacaacttcattaaataacagaagcattacaaga |
2857040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 24183209 - 24183160
Alignment:
| Q |
234 |
aacaacttcattaaacaacagaagtattacaagagacaataacatcattc |
283 |
Q |
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| T |
24183209 |
aacaacttcgttatataacagaggcattacaagagacaataacatcattc |
24183160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 406725 - 406676
Alignment:
| Q |
234 |
aacaacttcattaaacaacagaagtattacaagagacaataacatcattc |
283 |
Q |
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| T |
406725 |
aacaacttcgttatataacagaggcattacaagagacaataacatcattc |
406676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 283
Target Start/End: Original strand, 419353 - 419402
Alignment:
| Q |
234 |
aacaacttcattaaacaacagaagtattacaagagacaataacatcattc |
283 |
Q |
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| T |
419353 |
aacaacttcgttatataacagaggcattacaagagacaataacatcattc |
419402 |
T |
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