View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12779_high_24 (Length: 270)

Name: NF12779_high_24
Description: NF12779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12779_high_24
NF12779_high_24
[»] chr4 (5 HSPs)
chr4 (1-254)||(26720766-26721019)
chr4 (18-168)||(8541278-8541428)
chr4 (17-101)||(37618670-37618754)
chr4 (131-238)||(44161950-44162063)
chr4 (57-103)||(44161166-44161212)
[»] chr1 (4 HSPs)
chr1 (4-250)||(45117909-45118155)
chr1 (106-197)||(19769218-19769309)
chr1 (17-101)||(6919885-6919971)
chr1 (17-101)||(38239906-38239992)
[»] chr2 (3 HSPs)
chr2 (16-250)||(2985921-2986155)
chr2 (79-226)||(10495950-10496097)
chr2 (4-49)||(2985882-2985927)
[»] scaffold0036 (1 HSPs)
scaffold0036 (100-238)||(98110-98248)
[»] chr8 (2 HSPs)
chr8 (18-168)||(23820613-23820763)
chr8 (18-168)||(40172843-40172993)
[»] scaffold0004 (1 HSPs)
scaffold0004 (124-238)||(246442-246556)
[»] chr3 (2 HSPs)
chr3 (39-101)||(53537276-53537338)
chr3 (50-90)||(53689636-53689676)
[»] scaffold0275 (1 HSPs)
scaffold0275 (47-117)||(23003-23073)


Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 26720766 - 26721019
Alignment:
Q  1 gaagcggagaagaagctttcactctcttcaatgtcttctctactttcacagtcgtatttctcctcttatccctcgccttcgtcgactcgacctccaccgt 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  26720766 gaagcggagaagaagctttcactctcttccatgtcttctctactttcacagttgtatttctcctcttatccctcgccttcgtcgactcgacctccaccgt 26720865  T
Q  101 cagtagtgaattttctcttgcgacctcctctctaggtctcttcatcccgttgcctctttcgcttcccgttcattcaacaccaacaccatgcgccagtgcg 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  26720866 cagtagtgaattttctcttgcgaccacctctctaggtctcttcatcccgttgcctcttttgattcccgttcattcaacaccaacaccatgcgccagtgcg 26720965  T
Q  201 aggaacactcagatgagtccaatgtttccgattgtcgttgatggctctttccct 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26720966 aggaacactcagatgagtccaatgtttccgattgtcgttgatggctctttccct 26721019  T

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Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 8541278 - 8541428
Alignment:
Q  18 ttcactctcttcaatgtcttctctactttcacagtcgtatttctcctcttatccctcgccttcgtcgactcgacctccaccgtcagtagtgaattttctc 117  Q
    |||||||||||| ||||||| || ||||||||||||||||||||| ||| |||  ||||| |||||||||||||||||||||||||  ||| ||||||||    
T  8541278 ttcactctcttccatgtcttttccactttcacagtcgtatttctcttctcatctttcgccgtcgtcgactcgacctccaccgtcagcggtggattttctc 8541377  T
Q  118 ttgcgacctcctctctaggtctcttcatcccgttgcctctttcgcttcccg 168  Q
     |||| |||||||||||| ||||| | ||| |||||||||| || ||||||    
T  8541378 ctgcggcctcctctctagctctctccgtccagttgcctcttccgtttcccg 8541428  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 37618754 - 37618670
Alignment:
Q  17 tttcactctcttcaatgtcttctctactttcacagtcgtatttctcctcttatccctcgccttcgtcgactcgacctccaccgtc 101  Q
    ||||||||||||| ||||||| ||||||||||| |||||||||||||||| |||||||||| |||||||||| ||  ||||||||    
T  37618754 tttcactctcttccatgtcttttctactttcaccgtcgtatttctcctctcatccctcgccgtcgtcgactcaactgccaccgtc 37618670  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 131 - 238
Target Start/End: Original strand, 44161950 - 44162063
Alignment:
Q  131 tctaggtctcttcatcccgttgcctctttcgcttcccgttcattcaacaccaac------accatgcgccagtgcgaggaacactcagatgagtccaatg 224  Q
    |||||||||||   ||||||||| |||| |||||||||||||||||||||||||      |||||||||||||  || |||||||| |||||||||||||    
T  44161950 tctaggtctctatgtcccgttgcttcttccgcttcccgttcattcaacaccaacatcaacaccatgcgccagtatgatgaacactctgatgagtccaatg 44162049  T
Q  225 tttccgattgtcgt 238  Q
    || ||||| |||||    
T  44162050 ttgccgatcgtcgt 44162063  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 44161166 - 44161212
Alignment:
Q  57 tttctcctcttatccctcgccttcgtcgactcgacctccaccgtcag 103  Q
    |||||||||| |||||| ||| |||||||||||||| ||||||||||    
T  44161166 tttctcctctcatccctggccgtcgtcgactcgaccgccaccgtcag 44161212  T

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Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 4 - 250
Target Start/End: Complemental strand, 45118155 - 45117909
Alignment:
Q  4 gcggagaagaagctttcactctcttcaatgtcttctctactttcacagtcgtatttctcctcttatccctcgccttcgtcgactcgacctccaccgtcag 103  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  45118155 gcggaggagaagctttcactctcttccatgtcttctctactttcacaatcgtatttctcctctcatccctcgccttcgtcgactcgacctccaccgtcag 45118056  T
Q  104 tagtgaattttctcttgcgacctcctctctaggtctcttcatcccgttgcctctttcgcttcccgttcattcaacaccaacaccatgcgccagtgcgagg 203  Q
      |||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  45118055 cggtgaattttctcctgcagcctcctctctaggtctcttcatcccgttgcctctttcgcttcccgttcattcaacaccaacaccatgcgccagtacgagg 45117956  T
Q  204 aacactcagatgagtccaatgtttccgattgtcgttgatggctcttt 250  Q
    ||||||||||  ||||||||||||||||| |||||||||||||||||    
T  45117955 aacactcagacaagtccaatgtttccgatcgtcgttgatggctcttt 45117909  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 19769218 - 19769309
Alignment:
Q  106 gtgaattttctcttgcgacctcctctctaggtctcttcatcccgttgcctctttcgcttcccgttcattcaacaccaacaccatgcgccagt 197  Q
    |||||||||||| | || |||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  19769218 gtgaattttctcctccggcctcctctctaggtctctccttcccgttgcctcttccgcttcccgttcattcaacaccaacgccatgcgccagt 19769309  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 6919885 - 6919971
Alignment:
Q  17 tttcactctcttcaat--gtcttctctactttcacagtcgtatttctcctcttatccctcgccttcgtcgactcgacctccaccgtc 101  Q
    ||||||||||||| ||  ||||| |||||||||||| |||| |||||||||| |||||||||| ||||||||| |||| ||||||||    
T  6919885 tttcactctcttccatacgtcttttctactttcacaatcgtgtttctcctctcatccctcgccgtcgtcgacttgaccgccaccgtc 6919971  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 38239992 - 38239906
Alignment:
Q  17 tttcactctcttcaat--gtcttctctactttcacagtcgtatttctcctcttatccctcgccttcgtcgactcgacctccaccgtc 101  Q
    ||||||||||||| ||  ||||| |||||||||||| |||| |||||||||| |||||||||| ||||||||| |||| ||||||||    
T  38239992 tttcactctcttccatacgtcttttctactttcacaatcgtgtttctcctctcatccctcgccgtcgtcgacttgaccgccaccgtc 38239906  T

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Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 2985921 - 2986155
Alignment:
Q  16 ctttcactctcttcaatgtcttctctactttcacagtcgtatttctcctcttatccctcgccttcgtcgactcgacctccaccgtcagtagtgaattttc 115  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||    
T  2985921 ctttcactctcttccatgtcttctctactttcacaatcgtatttctcctctcatccctcgccttcgtcgactcgacctccaccgtcagcggtgaattttc 2986020  T
Q  116 tcttgcgacctcctctctaggtctcttcatcccgttgcctctttcgcttcccgttcattcaacaccaacaccatgcgccagtgcgaggaacactcagatg 215  Q
    || |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  2986021 tcctgctgcctcctctctaggtctcttcatcccgttgcctctttcgcttcccgttcattcaacaccaacatcatgcgccagtacgaggaacactcagatg 2986120  T
Q  216 agtccaatgtttccgattgtcgttgatggctcttt 250  Q
    ||||||||||||||||| |||||||||||||||||    
T  2986121 agtccaatgtttccgatcgtcgttgatggctcttt 2986155  T

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Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 79 - 226
Target Start/End: Complemental strand, 10496097 - 10495950
Alignment:
Q  79 tcgtcgactcgacctccaccgtcagtagtgaattttctcttgcgacctcctctctaggtctcttcatcccgttgcctctttcgcttcccgttcattcaac 178  Q
    |||| ||||||||| |||||||||    |||||||||||  ||| |||||||| |||||||||  |||||||||||||||  | ||||||||||||||||    
T  10496097 tcgttgactcgaccgccaccgtcaacgttgaattttctcccgcggcctcctctataggtctctctatcccgttgcctcttctgtttcccgttcattcaac 10495998  T
Q  179 accaacaccatgcgccagtgcgaggaacactcagatgagtccaatgtt 226  Q
    || |||||||||||| ||| ||| ||||||||  ||||||||||||||    
T  10495997 actaacaccatgcgctagtacgatgaacactctaatgagtccaatgtt 10495950  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 2985882 - 2985927
Alignment:
Q  4 gcggagaagaagctttcactctcttcaatgtcttctctactttcac 49  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  2985882 gcggagaagaagctttcactctcttccatgtcttctctactttcac 2985927  T

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Target: scaffold0036 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 100 - 238
Target Start/End: Original strand, 98110 - 98248
Alignment:
Q  100 tcagtagtgaattttctcttgcgacctcctctctaggtctcttcatcccgttgcctctttcgcttcccgttcattcaacaccaacaccatgcgccagtgc 199  Q
    |||| ||||||||||||| |  | ||||||||||||||||||   |||||||||||||| ||||||||||||||||||||||||| |||||||||||| |    
T  98110 tcagcagtgaattttctcctctggcctcctctctaggtctctctgtcccgttgcctcttccgcttcccgttcattcaacaccaacgccatgcgccagtac 98209  T
Q  200 gaggaacactcagatgagtccaatgtttccgattgtcgt 238  Q
    || |||||||| ||| ||||||||||| ||||| |||||    
T  98210 gacgaacactctgataagtccaatgttgccgatcgtcgt 98248  T

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Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 23820613 - 23820763
Alignment:
Q  18 ttcactctcttcaatgtcttctctactttcacagtcgtatttctcctcttatccctcgccttcgtcgactcgacctccaccgtcagtagtgaattttctc 117  Q
    |||||||||||| ||||||| || ||||||||||||||||||||| ||| |||  ||||| |||||||||||||| ||||||||||  ||| ||||||||    
T  23820613 ttcactctcttccatgtcttttccactttcacagtcgtatttctcttctcatctttcgccgtcgtcgactcgaccgccaccgtcagcggtggattttctc 23820712  T
Q  118 ttgcgacctcctctctaggtctcttcatcccgttgcctctttcgcttcccg 168  Q
     |||| |||||||||||| ||||| | ||| |||||||||| || ||||||    
T  23820713 ctgcggcctcctctctagctctctccgtccagttgcctcttccgtttcccg 23820763  T

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Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 40172993 - 40172843
Alignment:
Q  18 ttcactctcttcaatgtcttctctactttcacagtcgtatttctcctcttatccctcgccttcgtcgactcgacctccaccgtcagtagtgaattttctc 117  Q
    |||||||||||| ||||||| || ||||||||||||||||||||| ||| |||  ||||| |||||||||||||| ||||||||||  ||| ||||||||    
T  40172993 ttcactctcttccatgtcttttccactttcacagtcgtatttctcttctcatctttcgccgtcgtcgactcgaccgccaccgtcagcggtggattttctc 40172894  T
Q  118 ttgcgacctcctctctaggtctcttcatcccgttgcctctttcgcttcccg 168  Q
     |||| |||||||||||| ||||| | ||| |||||||||| || ||||||    
T  40172893 ctgcggcctcctctctagctctctccgtccagttgcctcttccgtttcccg 40172843  T

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Target: scaffold0004 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 124 - 238
Target Start/End: Original strand, 246442 - 246556
Alignment:
Q  124 cctcctctctaggtctcttcatcccgttgcctctttcgcttcccgttcattcaacaccaacaccatgcgccagtgcgaggaacactcagatgagtccaat 223  Q
    ||||||||| |||||||| | ||| |||||||||| ||||||||||||||||||||||||| |||||||||||| ||| |||| ||| ||||| ||||||    
T  246442 cctcctctccaggtctctccgtcctgttgcctcttccgcttcccgttcattcaacaccaacgccatgcgccagtacgacgaacgctccgatgattccaat 246541  T
Q  224 gtttccgattgtcgt 238  Q
    ||| |||||| ||||    
T  246542 gttgccgattctcgt 246556  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 53537276 - 53537338
Alignment:
Q  39 tctactttcacagtcgtatttctcctcttatccctcgccttcgtcgactcgacctccaccgtc 101  Q
    ||||||||||||||||| |||||||||| |||||||||| ||||||||| |||| ||||||||    
T  53537276 tctactttcacagtcgtgtttctcctctcatccctcgccgtcgtcgacttgaccgccaccgtc 53537338  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 90
Target Start/End: Original strand, 53689636 - 53689676
Alignment:
Q  50 agtcgtatttctcctcttatccctcgccttcgtcgactcga 90  Q
    ||||||||||||||||  |||||||||| ||||||||||||    
T  53689636 agtcgtatttctcctcccatccctcgccgtcgtcgactcga 53689676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 117
Target Start/End: Original strand, 23003 - 23073
Alignment:
Q  47 cacagtcgtatttctcctcttatccctcgccttcgtcgactcgacctccaccgtcagtagtgaattttctc 117  Q
    |||||||||||||||||||| |||||| | | |||| |||| |||| ||||||||||  ||||||||||||    
T  23003 cacagtcgtatttctcctctcatccctggtcgtcgtggacttgaccgccaccgtcagcggtgaattttctc 23073  T

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