View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12779_high_26 (Length: 264)
Name: NF12779_high_26
Description: NF12779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12779_high_26 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 33581576 - 33581325
Alignment:
| Q |
18 |
cctccaaatgttaatcctgctctataatgaagattataatcttggtattattgatgtatctaggctaaatgaattggattatgatttatgaatcacaagt |
117 |
Q |
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| T |
33581576 |
cctccaaacgttaatcctgctctacaatgaagattataatcttggtattattgatgtatctaggctaaatgaattggattatgatttatgaatcacaagt |
33581477 |
T |
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| Q |
118 |
tttgttgaagttatccccaccaacaggcaataacacattgaacataataattgnnnnnnnnnatactaaagacattcacacaaacaacaacgctaatcta |
217 |
Q |
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| T |
33581476 |
tttgttgaagttatccccaccaacaggcaataacacattaaaaataataattg-ttttttttatactaaagacattcacacaaacaacaacgctaatcta |
33581378 |
T |
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| Q |
218 |
tgttatgccgtac------tatttcaacgattttcgacacaaaaacaatgtat |
264 |
Q |
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| T |
33581377 |
tgttatgccgtacttattatatttcaacgattttcgacacaaaaacaatgtat |
33581325 |
T |
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