View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12779_high_48 (Length: 229)

Name: NF12779_high_48
Description: NF12779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12779_high_48
NF12779_high_48
[»] chr4 (2 HSPs)
chr4 (7-97)||(758858-758947)
chr4 (154-229)||(759004-759079)
[»] chr3 (4 HSPs)
chr3 (7-97)||(36988430-36988517)
chr3 (7-97)||(37013869-37013956)
chr3 (176-229)||(36987575-36987628)
chr3 (176-229)||(37013014-37013067)
[»] chr2 (1 HSPs)
chr2 (156-196)||(19182003-19182043)


Alignment Details
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 758858 - 758947
Alignment:
Q  7 aggtgatgatatgtggtggtggttgaagaatgaataatagacaagggtaaaaggaaatgaaagtataataataagttccttgcaaactcac 97  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  758858 aggtgatgatatgtggtggtggttgaagaatgaataatagaca-gggtaaaaggaaatgaaagtataataataagttccttgcaaactcac 758947  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 154 - 229
Target Start/End: Original strand, 759004 - 759079
Alignment:
Q  154 ggtcattcaatgttttcattttatgtttagttggtaaggagtttagtcataagtaaagtgaacaagtcttacttaa 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  759004 ggtcattcaatgttttcattttatgtttagttggtaaggagtttagtcataagtaaagtgagcaagtcttacttaa 759079  T

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Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 36988517 - 36988430
Alignment:
Q  7 aggtgatgatatgtggtggtggttgaagaatgaataatagacaagggtaaaaggaaatgaaagtataataataagttccttgcaaactcac 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  36988517 aggtgatgatatgtggtggtggttgaagaatgaataatagacaagggtaaaaggaaatgaaagtata---ataagttccttgcaaactcac 36988430  T

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Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 37013956 - 37013869
Alignment:
Q  7 aggtgatgatatgtggtggtggttgaagaatgaataatagacaagggtaaaaggaaatgaaagtataataataagttccttgcaaactcac 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  37013956 aggtgatgatatgtggtggtggttgaagaatgaataatagacaagggtaaaaggaaatgaaagtata---ataagttccttgcaaactcac 37013869  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 36987628 - 36987575
Alignment:
Q  176 atgtttagttggtaaggagtttagtcataagtaaagtgaacaagtcttacttaa 229  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  36987628 atgtttagttggtaaggagtttagtcataattaaagtgagcaagtcttacttaa 36987575  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 37013067 - 37013014
Alignment:
Q  176 atgtttagttggtaaggagtttagtcataagtaaagtgaacaagtcttacttaa 229  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  37013067 atgtttagttggtaaggagtttagtcataattaaagtgagcaagtcttacttaa 37013014  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 19182003 - 19182043
Alignment:
Q  156 tcattcaatgttttcattttatgtttagttggtaaggagtt 196  Q
    ||||||||| |||| |||||||||||||||| |||||||||    
T  19182003 tcattcaatatttttattttatgtttagttgataaggagtt 19182043  T

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