View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12779_high_5 (Length: 498)
Name: NF12779_high_5
Description: NF12779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12779_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 452
Target Start/End: Complemental strand, 26711322 - 26710882
Alignment:
| Q |
18 |
gttataccactagagagccaaagcattgttgcactgaggaatatgcttcacctgaaaagtgtgcggcaaatcgatacacagagcttttagagaatcgatg |
117 |
Q |
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| T |
26711322 |
gttataccactagagagccaaagcattgttgcactgaggaatatgcttcacctgaaaagtgtgcgccaaatcgatacacagagcttttagagaatcgatg |
26711223 |
T |
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| Q |
118 |
tccaagtactgtttctaatgcttttgatgaaactcatttcacatgttttggtggaactagttttttaatattattcggctaaaattatattaactatcat |
217 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26711222 |
tccaagtactgtctctaatgcttttgatgaaactcatttcacatgttttggtgggactagttttttaatattattcggctaaaattatattaactaccat |
26711123 |
T |
|
| Q |
218 |
tatgtatcatttcaagaatgatattattcggctaaactca-----nnnnnnnnnnnnnnnaatgtgtttaaaaccagtggccatggaagacttacttcta |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
26711122 |
tatgtatcatttcaagaatgatattattcggctaaactcatttttattttttatttttttaatgtgtttaaaaccagtggccatggaagacttacttcta |
26711023 |
T |
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| Q |
313 |
gctactgatatagagatgccgacatggaaatagctttatatatttggttgattatgtatctcctttgttgattgttgttgtgtattacactc-tttattc |
411 |
Q |
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||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
26711022 |
gctactgatatagaggtgccgacatagaaatagctttatatatttggttgattatgtatctcctttgttgattgttgttgtgtattacactcttttatac |
26710923 |
T |
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| Q |
412 |
ttcttaaatgtattatgctattggttttctttgcaaatttt |
452 |
Q |
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| T |
26710922 |
ttcttaaatgtattatgctattggttttctttgcaaatttt |
26710882 |
T |
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