View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12779_high_51 (Length: 226)
Name: NF12779_high_51
Description: NF12779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12779_high_51 |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 9677613 - 9677801
Alignment:
| Q |
19 |
gattgtgagtctaacttctatatcgtcatcattaatcggattttgatagtatattaaacatacttaaatctcactcttagaagttagttcataaaacgag |
118 |
Q |
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| T |
9677613 |
gattgtgagtctaacttct----catcatctttaatcggattttgatagtatattaaacatacttaaatctcactcttagaagttagttcataaaacgag |
9677708 |
T |
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| Q |
119 |
ggtgtctaattacatatacatctaaagctctatgaaccttgataacctgaacttcaatataactttaatacactcattcacgcatagtctgtg |
211 |
Q |
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| T |
9677709 |
ggtgtctaattacatatacatccaaagctctatgaaccttgataacgtgaacttcaatataactttaatacactcattcacgcatagtgtgtg |
9677801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 21 - 190
Target Start/End: Original strand, 9677424 - 9677593
Alignment:
| Q |
21 |
ttgtgagtctaacttctatatcgtcatcattaatcggattttgatagtatattaaacatacttaaatctcactcttagaagttagttcataaaacgaggg |
120 |
Q |
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||||||||||||||||||||| |||||| ||||||||||||| ||||||||| ||| | |||| ||||||||||| |||||||||||||||||| |||| |
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| T |
9677424 |
ttgtgagtctaacttctatattgtcatctttaatcggattttaatagtatatcaaatagacttgaatctcactctaagaagttagttcataaaatgagga |
9677523 |
T |
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| Q |
121 |
tgtctaattacatatacatctaaagctctatgaaccttgataacctgaacttcaatataactttaataca |
190 |
Q |
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| T |
9677524 |
tgtctaattacagatacatataaagctctatgaaacttgataacgtgaacttcaatataacttcaataca |
9677593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 108 - 186
Target Start/End: Original strand, 9677027 - 9677105
Alignment:
| Q |
108 |
cataaaacgagggtgtctaattacatatacatctaaagctctatgaaccttgataacctgaacttcaatataactttaa |
186 |
Q |
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| T |
9677027 |
cataaaatgaggatgtctcattacatatacatctaaagctctataaaacttgataacgtgaacttcaatataactttaa |
9677105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 104 - 186
Target Start/End: Original strand, 9677318 - 9677400
Alignment:
| Q |
104 |
agttcataaaacgagggtgtctaattacatatacatctaaagctctatgaaccttgataacctgaacttcaatataactttaa |
186 |
Q |
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| T |
9677318 |
agttcataaaacaaggatgtctaattagatatacatccaaagctctatgaaacttgataacgtgaacttctatataactttaa |
9677400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 9677129 - 9677222
Alignment:
| Q |
21 |
ttgtgagtctaacttctatatcgtcatcattaatcggattttgatagtatattaaacatacttaaatctcactcttagaagttagttcataaaa |
114 |
Q |
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| T |
9677129 |
ttgtgattctaacttctgttttgtcatctttaattggattttgatagtatcttaaatagacttgaatctcactctgagaagttagttcataaaa |
9677222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 21 - 206
Target Start/End: Original strand, 14806894 - 14807079
Alignment:
| Q |
21 |
ttgtgagtctaacttctatatcgtcatcattaatcggattttgatagtatattaaacatacttaaatctcactcttagaagttagttcataaaacgaggg |
120 |
Q |
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|||||||||||||||||| || |||||| ||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
14806894 |
ttgtgagtctaacttctacattgtcatctttaatcggatttttatagtatataaaacagacttaaatctcactcttagaagttagtacataaaacgagga |
14806993 |
T |
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| Q |
121 |
tgtctaattacatatacatctaaagctctatgaaccttgataacctgaacttcaatataactttaatacactcattcacgcatagt |
206 |
Q |
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| T |
14806994 |
tgtctaattacatatacatccaaagctatatgattcttgataacgtgaacttcaatataactttaatacactcattcacgcttagt |
14807079 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 21 - 206
Target Start/End: Original strand, 15253888 - 15254073
Alignment:
| Q |
21 |
ttgtgagtctaacttctatatcgtcatcattaatcggattttgatagtatattaaacatacttaaatctcactcttagaagttagttcataaaacgaggg |
120 |
Q |
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|||||||||||||||||| || |||||| ||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
15253888 |
ttgtgagtctaacttctacattgtcatctttaatcggatttttatagtatataaaacagacttaaatctcactcttagaagttagtacataaaacgagga |
15253987 |
T |
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| Q |
121 |
tgtctaattacatatacatctaaagctctatgaaccttgataacctgaacttcaatataactttaatacactcattcacgcatagt |
206 |
Q |
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| T |
15253988 |
tgtctaattacatatacatccaaagctatatgattcttgataacgtgaacttcaatataactttaatacactcattcacgcttagt |
15254073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 14806833 - 14806882
Alignment:
| Q |
151 |
tgaaccttgataacctgaacttcaatataactttaatacactcattcacg |
200 |
Q |
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|||| |||||||| ||||||||||||||||||||||||| || |||||| |
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| T |
14806833 |
tgaaacttgataaggtgaacttcaatataactttaatacattccttcacg |
14806882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 15253827 - 15253876
Alignment:
| Q |
151 |
tgaaccttgataacctgaacttcaatataactttaatacactcattcacg |
200 |
Q |
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|||| |||||||| ||||||||||||||||||||||||| || |||||| |
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| T |
15253827 |
tgaaacttgataaggtgaacttcaatataactttaatacattccttcacg |
15253876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 21 - 206
Target Start/End: Complemental strand, 17531808 - 17531624
Alignment:
| Q |
21 |
ttgtgagtctaacttctatatcgtcatcattaatcggattttgatagtatattaaacatacttaaatctcactcttagaagttagttcataaaacgaggg |
120 |
Q |
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|||||||||||||||||| || |||||| ||||| ||||||||||||||||| ||| | |||| ||||||||||||||||||||| |||||||||||| |
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| T |
17531808 |
ttgtgagtctaacttctacattgtcatctttaattggattttgatagtatataaaatagacttgaatctcactcttagaagttaggacataaaacgagga |
17531709 |
T |
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| Q |
121 |
tgtctaattacatatacatctaaagctctatgaaccttgataacctgaacttcaatataactttaatacactcattcacgcatagt |
206 |
Q |
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|||||||||||||||||||| |||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| |
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| T |
17531708 |
tgtctaattacatatacatccaaagctatatgaaccttgataacgtgaa-ttcaatataactttaatacactcattcacgcctagt |
17531624 |
T |
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