View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12779_high_54 (Length: 209)
Name: NF12779_high_54
Description: NF12779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12779_high_54 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 50822508 - 50822334
Alignment:
| Q |
17 |
agaggtggatgacttcgtttccatggaaactcttgatgaagagggaatgctaaggtgtgggttgtgtaatattgcttgtatagattatgtgattatgggg |
116 |
Q |
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| T |
50822508 |
agaggtggatgacttcgtttccatggaaactcttgatgaagagggaatgctaaggtgtgggttgtgtaatattgcttgtatagattatgtgattatgggg |
50822409 |
T |
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| Q |
117 |
cttaatactttctgcagcaattcgtgtaagggatgttttgatgatttacaaaagcaactttttgagaatgttacc |
191 |
Q |
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| T |
50822408 |
cttaatactttctgcagcaattcgtgtaagggatgttttgatgatttacaaaagcaactttttgagaatgttacc |
50822334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 50853353 - 50853527
Alignment:
| Q |
17 |
agaggtggatgacttcgtttccatggaaactcttgatgaagagggaatgctaaggtgtgggttgtgtaatattgcttgtatagattatgtgattatgggg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50853353 |
agaggtggatgacttcgtttccatggaaactcttgatgaagagggaatgctaaggtgtgggttgtgtaatattgcttgtatagattatgtgattatgggg |
50853452 |
T |
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| Q |
117 |
cttaatactttctgcagcaattcgtgtaagggatgttttgatgatttacaaaagcaactttttgagaatgttacc |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50853453 |
cttaatactttctgcagcaattcgtgtaagggatgttttgatgatttacaaaagcaactttttgagaatgttacc |
50853527 |
T |
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