View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12779_high_7 (Length: 463)
Name: NF12779_high_7
Description: NF12779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12779_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 3e-89; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 22 - 205
Target Start/End: Complemental strand, 6817496 - 6817309
Alignment:
| Q |
22 |
gtgcattgcaccttgctgctacttatagacggtttaagccttggcgtgtacctggtgctgcaatgcaaatgcagtgggaatacaagtggtataaggtaaa |
121 |
Q |
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| T |
6817496 |
gtgcattgcaccttgctgctacttatagaaggtttaagccttggcgtgtacctggtgctgcaatgcaaatgcagtgggaatacaagtggtataaggtaaa |
6817397 |
T |
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| Q |
122 |
gagtatttctccatttttaattatttgtcttctct----tatagtttagaaatcttcacaaactagcaatttgtcatgtcacatagga |
205 |
Q |
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| T |
6817396 |
gagtatttctccatttttaattatttgtcttctcttatatatagtttagaaatcttcacaaactagcaatttgtcatgtcacatagga |
6817309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 281 - 463
Target Start/End: Complemental strand, 6817292 - 6817110
Alignment:
| Q |
281 |
tgaaccaagccgcactgagaaaaccgaactgtaattgacagttcacgaacttaaccagtttggtgcagttcaatttgtgaactatctatcacagtttggt |
380 |
Q |
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| T |
6817292 |
tgaaccaagccgcactgagaaaaccaaactgtaattgacagttcacgaacttaaccagtttggtgcagttcaattcgtgaactatctgtcacagtttggt |
6817193 |
T |
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| Q |
381 |
tattttaggtgcagttcaattcggtttttggtctatttaaacaatcctaaggtccgatttcgttcagattatggtttttccta |
463 |
Q |
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| T |
6817192 |
tcttttaggtgcagttcaattcggtttttggtctatttaaacaatcctaaggtccgatttcgttcggattatggtttttccta |
6817110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 6809360 - 6809183
Alignment:
| Q |
18 |
aacagtgcattgcaccttgctgctacttatagacggtttaagccttggcgtgtacctggtgctgcaatgcaaatgcagtgggaatacaagtggtataagg |
117 |
Q |
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| T |
6809360 |
aacagtgcattgcaccttgctgctacttatagaaggtttaagccttggcgtgtacctggtgcggcaatgcaaatgcagtgggaatacaagtggtataagg |
6809261 |
T |
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| Q |
118 |
taaagagtatttctccatttttaattatttgtcttctcttatagtttagaaatcttcacaaactagcaatttgtcatgt |
196 |
Q |
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| T |
6809260 |
taaagattatttctccatatttagttatttaccctc-cctataatttagaaattttcacaaactagcaatttgtcatgt |
6809183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 6832003 - 6831902
Alignment:
| Q |
18 |
aacagtgcattgcaccttgctgctacttatagacggtttaagccttggcgtgtacctggtgctgcaatgcaaatgcagtgggaatacaagtggtataagg |
117 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6832003 |
aacagtgcattgcatcttgctgctacttataggaggtttaagccttggcgtgtgcccggtgctgcaatgcaaatgcagtgggaatacaagtggtataagg |
6831904 |
T |
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| Q |
118 |
ta |
119 |
Q |
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|| |
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| T |
6831903 |
ta |
6831902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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