View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12779_high_8 (Length: 454)
Name: NF12779_high_8
Description: NF12779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12779_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 33750687 - 33751104
Alignment:
| Q |
1 |
gaatatgaatcaagaaattcaaagtgagacaaatatgggatttgggaataatatggattgtgatttttgggataggcttggggaaactgattttcaacaa |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33750687 |
gaatatgaatcaagaaatgcaaagtgagacaaatattggatttgggaataatatggattgtgatttttgggataggcttggggaaactgattttcaacaa |
33750786 |
T |
|
| Q |
101 |
ctgatgaggtttatggattttggtggagattcttctgattccagaactgggaacacttttaattagttcctgaactcaacaacaatggaacagttacttg |
200 |
Q |
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| T |
33750787 |
ctgatgaggtttatggattttggtggagattcttctgattccagaactgggaacacttttaattagttcctgaactcaacaacaatggaacagttacttg |
33750886 |
T |
|
| Q |
201 |
tgtaaattagtgcgtgtttgaccgaggttaaggtattgattagcttcgctttgcaacaatgtgcataatctttcttccactagattttttcggaggagga |
300 |
Q |
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| T |
33750887 |
tgtaaattagtgcgtgtttgaccgaggttaaggtattgattagcttcgctttgcaacaatgtgcataatctttcttccactagattttttcggaggagga |
33750986 |
T |
|
| Q |
301 |
agttgccttgccagctgcaagtgcaaatcgtgatttcaatttttgtttttgcagaagaatctgctatgtagaattttgctgtgcaatgtgcagctagcta |
400 |
Q |
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|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33750987 |
agttaccatgccagctgcaagtgcaaatcgtgatttcaatttttgtttttgcagaagaatctgctatgtagaattttgctgtgcaatgtgc----agcta |
33751082 |
T |
|
| Q |
401 |
gtgtctttcttgcttcaactac |
422 |
Q |
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|||||||||||||||||||||| |
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| T |
33751083 |
gtgtctttcttgcttcaactac |
33751104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 33735875 - 33736035
Alignment:
| Q |
1 |
gaatatgaatcaagaaattcaaagtgagacaaatatgggatttgggaataatatggattgtgatttttgggataggcttggggaaactgattttcaacaa |
100 |
Q |
| |
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|||||||||||||||||| |||| |||||||| ||||||||||| || ||||| | ||||||||||||||||||| | || ||| |||||||||||||| |
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| T |
33735875 |
gaatatgaatcaagaaatacaaattgagacaactatgggatttgagagtaataagaattgtgatttttgggatagtatcggagaagctgattttcaacaa |
33735974 |
T |
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| Q |
101 |
ctgatgaggtttatggattttggtggagattcttctgattccagaactgggaacactttta |
161 |
Q |
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|| ||||||||||||||||||| | ||||||||||||| || ||||| |||||||||||| |
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| T |
33735975 |
ctaatgaggtttatggattttgatagagattcttctgactcaagaacatggaacactttta |
33736035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 33719205 - 33719578
Alignment:
| Q |
1 |
gaatatgaatcaagaaattcaaagtgagacaaatatgggatttgggaataatatggattgtgatttttgggataggcttggggaaactgattttcaacaa |
100 |
Q |
| |
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|||||||||||||||||| |||| ||| |||| | ||| |||| |||||||| |||||||||||||| |||||| |||| ||| |||||||||||||| |
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| T |
33719205 |
gaatatgaatcaagaaatgcaaattgaaacaatgacggggtttgagaataataaggattgtgattttttggatagcattggtgaacctgattttcaacaa |
33719304 |
T |
|
| Q |
101 |
ctgatgaggtttatggattttggtggagattcttctgattccagaactgggaacacttttaattagttcctgaactcaacaacaatggaacagttacttg |
200 |
Q |
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| |||| ||||||||| ||| |||||||||||||| ||| || || ||||| |||||||||||||| |||| |||||||||| ||||||| | || |
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| T |
33719305 |
tttatgaagtttatggaattttctggagattcttctggttctaggacagggaatccttttaattagttcatgaattcaacaacaaatgaacagtgatttt |
33719404 |
T |
|
| Q |
201 |
tgtaa-----attagtgcgtgtttgaccgaggttaag-gtattgattagcttcgctttgcaacaatgtgcataatctttcttccactagattttttcgga |
294 |
Q |
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| | | ||| ||| | ||| ||| ||||| |||||||||||||| ||| || ||||||||||||||| ||||| || ||||||||| | |
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| T |
33719405 |
ttttagcatgtttaactagtggtagactgagattaagtgtattgattagctttgctgtg---caatgtgcataatctctcttctacgagattttttttta |
33719501 |
T |
|
| Q |
295 |
-ggaggaagttgccttgccagctgcaagtgcaaatcgtgatttcaatttttgtttttgcagaagaatctgctatgtagaatt |
375 |
Q |
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|||||||||||| || |||||||||||||| ||||||||||| |||| ||||| ||||||||| ||| ||||||||| |
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| T |
33719502 |
gggaggaagttgcttt-----ctgcaagtgcaaatagtgatttcaatgtttgattttgaagaagaatccgctttgtagaatt |
33719578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 196
Target Start/End: Original strand, 33721214 - 33721392
Alignment:
| Q |
12 |
aagaaattcaaagtgagacaaatatgggatttgggaataatatg---gattgtgatttttgggataggcttggggaaa---ctgattttcaacaactgat |
105 |
Q |
| |
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||||||| |||| |||||||| ||||||||||||||||||| | || ||||||||||||||||| |||||||| |||||||||||||||| || |
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| T |
33721214 |
aagaaatgcaaattgagacaacgatgggatttgggaataatacgactgaatgtgatttttgggatagtattggggaagaagctgattttcaacaacttat |
33721313 |
T |
|
| Q |
106 |
gaggtttatggattttggtggagattcttctgattccagaactgggaacacttttaattagttcctgaactcaacaacaatggaacagtta |
196 |
Q |
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|||||||||| ||||||||| |||| ||||| || |||||||||||||||||||| || |||||||||| ||||||||| |
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| T |
33721314 |
gaggtttatg------------gattcttctcattctagaacaggaaacacttttaattagttcctcaattcaacaacaacagaacagtta |
33721392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 127
Target Start/End: Original strand, 32575066 - 32575155
Alignment:
| Q |
38 |
ggatttgggaataatatggattgtgatttttgggataggcttggggaaactgattttcaacaactgatgaggtttatggattttggtgga |
127 |
Q |
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|||||| | ||| ||||||||||||| |||||||||| | |||||||| ||| |||| ||| | |||||||||||||||||||||||| |
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| T |
32575066 |
ggatttagaaatgatatggattgtgaattttgggatatgattggggaaggtgaatttcggcaagttatgaggtttatggattttggtgga |
32575155 |
T |
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