View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12779_low_10 (Length: 450)

Name: NF12779_low_10
Description: NF12779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12779_low_10
NF12779_low_10
[»] chr3 (16 HSPs)
chr3 (15-441)||(26770949-26771377)
chr3 (44-315)||(40930519-40930790)
chr3 (44-312)||(34332806-34333074)
chr3 (87-325)||(33496415-33496653)
chr3 (34-325)||(35214354-35214643)
chr3 (80-315)||(11203697-11203932)
chr3 (243-367)||(29523935-29524059)
chr3 (242-429)||(36801264-36801451)
chr3 (34-168)||(29523724-29523860)
chr3 (77-220)||(17097900-17098043)
chr3 (44-270)||(2364200-2364426)
chr3 (212-325)||(7031176-7031289)
chr3 (242-315)||(12342414-12342487)
chr3 (340-389)||(17098163-17098212)
chr3 (345-430)||(48570331-48570416)
chr3 (44-192)||(7312777-7312925)
[»] chr2 (7 HSPs)
chr2 (15-441)||(17764922-17765350)
chr2 (44-381)||(41206828-41207165)
chr2 (15-369)||(28252544-28252900)
chr2 (80-435)||(15917411-15917767)
chr2 (41-266)||(38604362-38604587)
chr2 (201-325)||(12645404-12645528)
chr2 (44-222)||(4552140-4552318)
[»] chr6 (14 HSPs)
chr6 (19-441)||(15958777-15959202)
chr6 (40-435)||(14372978-14373373)
chr6 (44-312)||(24767415-24767683)
chr6 (327-440)||(32536648-32536761)
chr6 (86-312)||(2553518-2553744)
chr6 (44-301)||(18651225-18651482)
chr6 (34-435)||(20883012-20883415)
chr6 (34-325)||(21630086-21630381)
chr6 (242-325)||(17606523-17606606)
chr6 (212-325)||(17573814-17573927)
chr6 (212-325)||(17579240-17579353)
chr6 (86-222)||(12734096-12734232)
chr6 (340-372)||(17330783-17330815)
chr6 (80-168)||(17606361-17606449)
[»] chr8 (15 HSPs)
chr8 (100-427)||(34137010-34137337)
chr8 (44-312)||(13396269-13396537)
chr8 (44-315)||(9922479-9922750)
chr8 (90-270)||(32266487-32266667)
chr8 (85-301)||(5181562-5181778)
chr8 (44-428)||(2170105-2170491)
chr8 (34-313)||(37434012-37434293)
chr8 (242-429)||(17699246-17699433)
chr8 (44-312)||(41665360-41665628)
chr8 (212-431)||(43270212-43270431)
chr8 (41-432)||(13199884-13200275)
chr8 (202-279)||(2529800-2529877)
chr8 (44-270)||(7924309-7924535)
chr8 (212-325)||(20824164-20824277)
chr8 (80-168)||(20824321-20824409)
[»] chr4 (18 HSPs)
chr4 (15-424)||(11587158-11587569)
chr4 (44-312)||(7403794-7404062)
chr4 (86-301)||(15740113-15740328)
chr4 (75-301)||(1828562-1828788)
chr4 (242-325)||(12697681-12697764)
chr4 (87-312)||(19755145-19755373)
chr4 (87-312)||(19784433-19784661)
chr4 (343-435)||(2822327-2822419)
chr4 (242-325)||(4548408-4548491)
chr4 (242-325)||(8360968-8361051)
chr4 (80-168)||(45472736-45472824)
chr4 (90-294)||(47685932-47686136)
chr4 (212-435)||(20002476-20002699)
chr4 (85-168)||(55725718-55725801)
chr4 (361-432)||(17401994-17402065)
chr4 (44-234)||(13270882-13271072)
chr4 (44-270)||(23642582-23642808)
chr4 (41-110)||(19735735-19735804)
[»] chr1 (7 HSPs)
chr1 (15-369)||(47623037-47623391)
chr1 (242-325)||(43388235-43388318)
chr1 (44-222)||(51052451-51052629)
chr1 (80-279)||(37191237-37191436)
chr1 (44-192)||(11909096-11909244)
chr1 (80-168)||(16917836-16917924)
chr1 (80-172)||(43388388-43388480)
[»] chr5 (16 HSPs)
chr5 (44-312)||(42928012-42928280)
chr5 (44-315)||(28535666-28535937)
chr5 (44-301)||(23238276-23238533)
chr5 (81-418)||(19255150-19255488)
chr5 (86-301)||(8227918-8228133)
chr5 (44-315)||(35983782-35984053)
chr5 (34-315)||(33385353-33385636)
chr5 (34-435)||(18359071-18359472)
chr5 (44-222)||(12825170-12825348)
chr5 (44-222)||(30732305-30732483)
chr5 (34-168)||(8300161-8300297)
chr5 (34-325)||(27766911-27767203)
chr5 (212-325)||(8300341-8300454)
chr5 (80-168)||(25857451-25857539)
chr5 (86-270)||(27117194-27117378)
chr5 (44-120)||(31641584-31641660)
[»] scaffold0472 (1 HSPs)
scaffold0472 (44-301)||(3144-3401)
[»] chr7 (10 HSPs)
chr7 (44-312)||(235428-235698)
chr7 (44-301)||(11277243-11277500)
chr7 (44-284)||(47876892-47877132)
chr7 (25-301)||(17720527-17720805)
chr7 (88-301)||(29967867-29968080)
chr7 (44-312)||(37919425-37919693)
chr7 (34-435)||(37254516-37254919)
chr7 (249-431)||(18530272-18530454)
chr7 (80-435)||(25619217-25619572)
chr7 (44-270)||(4938119-4938345)
[»] scaffold0034 (1 HSPs)
scaffold0034 (44-270)||(105834-106060)
[»] scaffold0369 (1 HSPs)
scaffold0369 (90-222)||(11242-11374)


Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 15 - 441
Target Start/End: Original strand, 26770949 - 26771377
Alignment:
Q  15 tcagggtggcgggtattcagttcgtggtgt--atgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaa 112  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||     
T  26770949 tcagggtggcgggtattcagttcgtggtgtgtatgacatgctaacattacaggaacatccttagttacatccaaatatggagttaatgtggcataaacag 26771048  T
Q  113 gctcctcttaaaatctctatgcttgtttggcggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgc 212  Q
    |||||||||||| ||||||| |||  |||||||| |||||| ||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||    
T  26771049 gctcctcttaaagtctctattcttacttggcggcttttgagggatcgtttacctacgaaagcaaatttggcaaaccgtggtatcattcctttggaggtgc 26771148  T
Q  213 ggttgtgtgtcactggttgtggacacgtggaagatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggct 312  Q
     ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |    
T  26771149 agttgtgtgtcactggttgtgggcacgtggaagatgtgaatcacttgtttttgtcttgcccaatttttagtgccttatggccattggtgagggcttggtt 26771248  T
Q  313 tggggttgaagggcttgatccttagcatatttcggaccattttttgcaatttattcattacgcatgttgcttgaaattgcgaagatcttatttccatttc 412  Q
    ||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||| |||| |||||||| || |||||||||     
T  26771249 tggggttgaaggggttgatcctcagcatatttcggacaattttttgcaatttattcattacgcaggttgcttaaaatcgcgaagattttttttccatttg 26771348  T
Q  413 atttggcttcagtgtgtttgggtcctatg 441  Q
    |||||||||||||||||||||||||||||    
T  26771349 atttggcttcagtgtgtttgggtcctatg 26771377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 44 - 315
Target Start/End: Original strand, 40930519 - 40930790
Alignment:
Q  44 tatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggc 143  Q
    ||||||||||| |||| |||||| || ||| |||| |||| ||| ||||||||| | || |||||||| | |||||| ||| | ||||| |||| |||||    
T  40930519 tatgacatgctgacatcacaggagcaacctcagttgcatcaaaacatggagttagtttgacataaacaggttcctctcaaagtatctatccttgcttggc 40930618  T
Q  144 ggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgtcactggttgtggacacgtgga 243  Q
    | | |||||| ||| | |||||||| |||   |||| ||||||||||||  |  |  ||||||||| ||||||||||||  ||||||||||  |||| ||    
T  40930619 gacttttgagggattggttacctacaaaaaataatttggcaaaccgtggccttttacctttggaggcgcggttgtgtgtttctggttgtgggaacgtcga 40930718  T
Q  244 agatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggcttgg 315  Q
    |||||| ||||| ||||||||||||||  ||| |||||||| |||||||||| ||||| |||| ||||||||    
T  40930719 agatgtcaatcatttgtttttgtcttgttcaacttttagtgccttatggccaatggtgcgggcatggcttgg 40930790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 44 - 312
Target Start/End: Original strand, 34332806 - 34333074
Alignment:
Q  44 tatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggc 143  Q
    ||||||||||| |||| |||||| || ||  |||||||||  |||||||||||||| ||||||||||| | |||||| ||| | ||||| |||| |||||    
T  34332806 tatgacatgctgacatcacaggagcagccccagttacatcataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggc 34332905  T
Q  144 ggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgtcactggttgtggacacgtgga 243  Q
      | | |||||||||| |||||||| |||   |||| |||||||||||| ||  |  ||||||||| ||||||||||||  |||| |||||  |||| ||    
T  34332906 aacttctgagagatcgattacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttga 34333005  T
Q  244 agatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggct 312  Q
    |||||| ||||| ||||||||||||||   || ||||||||  ||||||||| ||||| |||| |||||    
T  34333006 agatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatggccaatggtgcgggcatggct 34333074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 87 - 325
Target Start/End: Complemental strand, 33496653 - 33496415
Alignment:
Q  87 atatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggcggcatttgagagatcgtttacctacgaaagtaaattcggcaaa 186  Q
    ||||||||||||| ||||||||||| | |||| | ||| | |||||  ||| |||||| |  ||||| |||||||||||||| |||  ||||| ||   |    
T  33496653 atatggagttaatttggcataaacaggttcctttaaaagtttctatcattgcttggcgactgttgagggatcgtttacctactaaatcaaatttggtgga 33496554  T
Q  187 ccgtggtatcatttctttggaggtgcggttgtgtgtcactggttgtggacacgtggaagatgtgaatcacttgtttttgtcttgcccaatttttagtgtc 286  Q
     ||||| || || ||| ||||    ||||| ||||| |  || || ||||| || |||||||||||||| || ||||||||||| ||||||||| |||      
T  33496553 acgtgggattatatctgtggaaaatcggttttgtgtaatgggatgcggacaggttgaagatgtgaatcatttatttttgtcttgtccaatttttggtgca 33496454  T
Q  287 ttatggccattggtgagggcttggcttggggttgaaggg 325  Q
    || ||||| |||||| ||||||||||||| || ||||||    
T  33496453 ttgtggcctttggtgcgggcttggcttggtgtcgaaggg 33496415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 325
Target Start/End: Original strand, 35214354 - 35214643
Alignment:
Q  34 gttcgtggtgtatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatg 133  Q
    ||||||||||||  ||||| |||||| || |||||| ||| |  | |||| ||||||||||||||| ||||||||||| | |||| | ||| | |||||     
T  35214354 gttcgtggtgta--acatgttaacatcacgggaacaacctcatgttcatcaaaatatggagttaatctggcataaacaggttcctttaaaagtttctatc 35214451  T
Q  134 cttgtttggcggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgtcactggttgtg 233  Q
    ||||||||||||   ||||| |||||||| ||||| |||  ||||| | || | ||||| ||  | | | |||| |  | ||| ||||| || || |||     
T  35214452 cttgtttggcggatgttgagggatcgtttgcctactaaatcaaatttgccagaacgtgggattctatatgtggaagctcagttttgtgtaacgggatgtt 35214551  T
Q  234 gacacgtggaagatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggcttggggttgaaggg 325  Q
    | || || |||||||||||||| ||||| |||||||| ||||||||| |||  || |||||  ||||| |||| |||||||| || ||||||    
T  35214552 ggcatgttgaagatgtgaatcatttgttcttgtcttgtccaatttttggtgcattgtggcctatggtgcgggcatggcttggtgtcgaaggg 35214643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 315
Target Start/End: Complemental strand, 11203932 - 11203697
Alignment:
Q  80 catctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggcggcatttgagagatcgtttacctacgaaagtaaatt 179  Q
    |||| ||||||||||||||| ||||||||||| | |||| | ||| | ||||| |||| |||||| |  ||||| |||||||||||||| |||  |||||    
T  11203932 catcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatacttgcttggcgactgttgagggatcgtttacctactaaatcaaatt 11203833  T
Q  180 cggcaaaccgtggtatcatttctttggaggtgcggttgtgtgtcactggttgtggacacgtggaagatgtgaatcacttgtttttgtcttgcccaatttt 279  Q
     ||   | ||||| || ||  || ||||    ||||| ||||| || || || || || || |||||||||||||| || ||||||||||| ||||||||    
T  11203832 tggtggaacgtgggattatagctgtggaaaatcggttttgtgtaacgggatgcgggcaggttgaagatgtgaatcatttatttttgtcttgtccaatttt 11203733  T
Q  280 tagtgtcttatggccattggtgagggcttggcttgg 315  Q
    | ||   || ||||| |||||| |||||||||||||    
T  11203732 tggttcattgtggcctttggtgcgggcttggcttgg 11203697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 367
Target Start/End: Original strand, 29523935 - 29524059
Alignment:
Q  243 aagatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggcttggggttgaagggcttgatccttagcatat 342  Q
    ||||||||||||| || || |||||||| ||||||||| |||  || ||||| |||||| ||||||||||||| || |||||| | ||| || |  ||||    
T  29523935 aagatgtgaatcatttattcttgtcttgtccaatttttggtgcattgtggcctttggtgtgggcttggcttggtgtcgaaggggtcgattctcataatat 29524034  T
Q  343 ttcggaccattttttgcaatttatt 367  Q
     || || |||||| |||||||||||    
T  29524035 ctcagatcattttgtgcaatttatt 29524059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 429
Target Start/End: Original strand, 36801264 - 36801451
Alignment:
Q  242 gaagatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggcttggggttgaagggcttgatccttagcata 341  Q
    |||||||| ||||| || ||||||||||| ||||||||| |||  || ||||| |||||| ||||||||||||| || |||||| | ||| || |   ||    
T  36801264 gaagatgtaaatcatttatttttgtcttgtccaatttttggtgcattgtggcctttggtgcgggcttggcttggtgtcgaaggggtagattctcatgcta 36801363  T
Q  342 tttcggaccattttttgcaatttattcattacgcatgttgcttgaaattgcgaagat-cttatttccatttcatttggcttcagtgtgt 429  Q
    | || || |||||| ||||||||||| | || ||| || ||||||||| |||  ||| ||||||| ||||| |||||| | ||||||||    
T  36801364 tctcagatcattttgtgcaatttattgaatatgcaggtggcttgaaatcgcgtcgatccttattt-catttgatttggttacagtgtgt 36801451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 168
Target Start/End: Original strand, 29523724 - 29523860
Alignment:
Q  34 gttcgtggtgtat--gacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctcta 131  Q
    |||||||||||||  ||| || | |||| ||||||||| ||| |  | |||| ||||||||||||||| ||||||||||| | |||| | ||| | ||||    
T  29523724 gttcgtggtgtatatgacttgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttcta 29523823  T
Q  132 tgcttgtttggcggcatttgagagatcgtttacctac 168  Q
    | |||| |||||| |  ||||| ||||||||||||||    
T  29523824 tccttgcttggcgactgttgagggatcgtttacctac 29523860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 220
Target Start/End: Original strand, 17097900 - 17098043
Alignment:
Q  77 ttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggcggcatttgagagatcgtttacctacgaaagtaa 176  Q
    ||||||| |||| |||||||||| ||||||||||| ||   | | ||| |||||||  ||| || ||| |  ||||  ||||| |||||||| |||| ||    
T  17097900 ttacatcaaaatgtggagttaatttggcataaacaggcatatgtgaaagtctctatctttgcttagcgactgttgatggatcggttacctactaaagaaa 17097999  T
Q  177 attcggcaaaccgtggtatcatttctttggaggtgcggttgtgt 220  Q
    ||| |||||||||||| || |||||| ||||||  |||||||||    
T  17098000 atttggcaaaccgtgggattatttctatggaggcacggttgtgt 17098043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 270
Target Start/End: Complemental strand, 2364426 - 2364200
Alignment:
Q  44 tatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggc 143  Q
    ||||||||||| |||| |||||| || ||  ||||||| |  |||||||| ||||| ||||||||||| |  ||||| ||| | ||||| |||| |||||    
T  2364426 tatgacatgctgacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggc 2364327  T
Q  144 ggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgtcactggttgtggacacgtgga 243  Q
    | |   |||| ||||| |||||||| ||| | |||| |||||| ||||| ||  | ||| |||||| |||||| || ||  |||| |||||    || ||    
T  2364326 gactactgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcga 2364227  T
Q  244 agatgtgaatcacttgtttttgtcttg 270  Q
    |||||| | ||| ||||||||||||||    
T  2364226 agatgttactcatttgtttttgtcttg 2364200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 325
Target Start/End: Original strand, 7031176 - 7031289
Alignment:
Q  212 cggttgtgtgtcactggttgtggacacgtggaagatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggc 311  Q
    ||||| ||||| || || ||||| || || |||||||||||||| || ||||||||||| || | |||| |||  || |||||  ||||| |||||||||    
T  7031176 cggttttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggc 7031275  T
Q  312 ttggggttgaaggg 325  Q
    |||| || ||||||    
T  7031276 ttggtgtcgaaggg 7031289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 315
Target Start/End: Original strand, 12342414 - 12342487
Alignment:
Q  242 gaagatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggcttgg 315  Q
    |||||||||||||| || || || ||||| ||||||||| |||  || ||||| |||||| |||||||||||||    
T  12342414 gaagatgtgaatcatttattcttctcttgtccaatttttggtgcattgtggcctttggtgcgggcttggcttgg 12342487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 389
Target Start/End: Original strand, 17098163 - 17098212
Alignment:
Q  340 tatttcggaccattttttgcaatttattcattacgcatgttgcttgaaat 389  Q
    |||||| |||||||| ||||||||||||||||||||| || | |||||||    
T  17098163 tatttcagaccatttcttgcaatttattcattacgcaggtggtttgaaat 17098212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 430
Target Start/End: Original strand, 48570331 - 48570416
Alignment:
Q  345 cggaccattttttgcaatttattcattacgcatgttgcttgaaattgcgaagatcttatttccatttcatttggcttcagtgtgtt 430  Q
    |||| |||||| ||||||||||||| || ||| || ||||||||| |||  |||||   ||||| || ||||||||||||||||||    
T  48570331 cggatcattttatgcaatttattcaatatgcaggtggcttgaaatcgcgtcgatctctcttccacttgatttggcttcagtgtgtt 48570416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 192
Target Start/End: Complemental strand, 7312925 - 7312777
Alignment:
Q  44 tatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggc 143  Q
    ||||||||||| |||| |||||| || ||  ||||||| |  |||||||| ||||| ||||||||||| |  ||||| ||| | ||||| |||| |||||    
T  7312925 tatgacatgctgacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtacctctcaaagtatctatccttgcttggc 7312826  T
Q  144 ggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtgg 192  Q
    | |   |||| ||||| |||||||| ||| | |||| |||||| |||||    
T  7312825 gactaatgagggatcggttacctacaaaacttaatttggcaaatcgtgg 7312777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 15 - 441
Target Start/End: Original strand, 17764922 - 17765350
Alignment:
Q  15 tcagggtggcgggtattcagttc---gtggtgtatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaaca 111  Q
    ||||||||||| |||||||||||   || |||||||||||| | |||| ||| |||||||||| |||| ||  |||||||||||||||||||||||||||    
T  17764922 tcagggtggcgagtattcagttcacagt-gtgtatgacatgttgacatcacatgaacatccttggttatattcaaatatggagttaatatggcataaaca 17765020  T
Q  112 agctcctcttaaaatctctatgcttgtttggcggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtg 211  Q
     |||||||||||| ||||||| |||| ||||||||  ||||| |||| |||||||||||||| ||||| ||||||||||||||||||| ||||||||| |    
T  17765021 ggctcctcttaaagtctctattcttgcttggcggctattgagggatcatttacctacgaaagcaaatttggcaaaccgtggtatcattcctttggaggcg 17765120  T
Q  212 cggttgtgtgtcactggttgtggacacgtggaagatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggc 311  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||| ||| |    
T  17765121 cggttgtgtgtcactggttgtggtcacgtggaagatgtgaatcacttgtttttgtcttgcccaatttttggtgccttatggtcattggtgagggattgac 17765220  T
Q  312 ttggggttgaagggcttgatccttagcatatttcggaccattttttgcaatttattcattacgcatgttgcttgaaattgcgaagatcttatttccattt 411  Q
     | ||||||||||| |||||||| | |||||||| ||||||||||||||| |||||||||||||| ||||||||||||  |||||||||| ||| |||||    
T  17765221 attgggttgaaggggttgatcctcaacatatttcagaccattttttgcaacttattcattacgcaggttgcttgaaatcacgaagatctttttttcattt 17765320  T
Q  412 catttggcttcagtgtgtttgggtcctatg 441  Q
     |||||||||||||||||||||||| ||||    
T  17765321 gatttggcttcagtgtgtttgggtcttatg 17765350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 44 - 381
Target Start/End: Complemental strand, 41207165 - 41206828
Alignment:
Q  44 tatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggc 143  Q
    ||||||||||| ||||  |||||||||||| ||||||||| ||||||||||||||| ||||||||||| | |||||| ||| ||||||| |||| |||||    
T  41207165 tatgacatgctgacatcgcaggaacatcctcagttacatccaaatatggagttaatttggcataaacaggttcctctcaaagtctctatccttgcttggc 41207066  T
Q  144 ggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgtcactggttgtggacacgtgga 243  Q
    ||| | |||| ||||| |||||||| |||   |||| |||||| ||||| || ||| | ||||||| |||||||||||||||||| || || ||||| ||    
T  41207065 ggcttctgagggatcggttacctacaaaaaataatttggcaaatcgtggcattattcccttggaggcgcggttgtgtgtcactggatgcgggcacgttga 41206966  T
Q  244 agatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggcttggggttgaagggcttgatccttagcatatt 343  Q
    |||||| ||||| ||||| |||||||| |||| |||| ||| ||||||||||||| || |||| ||||| || || | |||| ||||  || ||   | |    
T  41206965 agatgtcaatcatttgttcttgtcttgtccaacttttggtgccttatggccattgatgcgggcatggctcggagtggtaggggttgactctcagacaact 41206866  T
Q  344 tcggaccattttttgcaatttattcattacgcatgttg 381  Q
    || || |||||||||||||||||| | |||||| ||||    
T  41206865 tcagatcattttttgcaatttattaactacgcaagttg 41206828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 15 - 369
Target Start/End: Complemental strand, 28252900 - 28252544
Alignment:
Q  15 tcagggtggcgggtattcagttcgt--ggtgtatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaa 112  Q
    |||||| ||||| |||||||| |||  ||||||||||||||| |||| ||||||||| ||| ||||||||  |  |||||| ||||| |||||||||||     
T  28252900 tcagggaggcggttattcagtccgtagggtgtatgacatgctgacatcacaggaacagcctcagttacattcatctatggaattaatttggcataaacag 28252801  T
Q  113 gctcctcttaaaatctctatgcttgtttggcggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgc 212  Q
    |  ||||| ||| | ||||| |||| |||||||| |||||| ||||| ||||||||||| | ||||| |||||||| ||| || |||  | |||||| ||    
T  28252800 gtacctctaaaagtatctattcttgcttggcggcttttgagggatcgcttacctacgaagggaaatttggcaaaccatggcattattcatatggaggggc 28252701  T
Q  213 ggttgtgtgtcactggttgtggacacgtggaagatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggct 312  Q
    |||| |||||  | |||||||| || |  |||||||||||||| |||||||||||||| ||| ||||| ||| ||||||| | |||||| |||  |||||    
T  28252700 ggttatgtgtttccggttgtggtcatgatgaagatgtgaatcatttgtttttgtcttgtccattttttggtgccttatggtctttggtgcgggagtggct 28252601  T
Q  313 tggggttgaagggcttgatccttagcatatttcggaccattttttgcaatttattca 369  Q
     |||||||||||  ||||| |||||  |||  | |||||||||||||||||||||||    
T  28252600 gggggttgaaggtgttgattcttagtctatggcagaccattttttgcaatttattca 28252544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 80 - 435
Target Start/End: Complemental strand, 15917767 - 15917411
Alignment:
Q  80 catctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggcggcatttgagagatcgtttacctacgaaagtaaatt 179  Q
    |||| |||||| |||||||| | ||||||| | | |||||| ||| ||| ||| |||| |||| | |   |||| |||||||||||||| ||||| ||||    
T  15917767 catcaaaatattgagttaatttcgcataaataggttcctctgaaagtctgtatccttgcttggggactgctgagggatcgtttacctacaaaagttaatt 15917668  T
Q  180 cggcaaaccgtggtatcatttctttggaggtgcggttgtgtgtcactggttgtggacacgtggaagatgtgaatcacttgtttttgtcttgcccaatttt 279  Q
     |||||| |||||||| ||| ||||||| |||||||||||||||||||||||||| || || ||||||||||||||  ||||||||||||| |||| |||    
T  15917667 tggcaaatcgtggtattattcctttggaagtgcggttgtgtgtcactggttgtgggcatgttgaagatgtgaatcatatgtttttgtcttgtccaacttt 15917568  T
Q  280 tagtgtcttatggccattggtgagggcttggcttggggttgaagggcttgatccttagcatatttcggaccattttttgcaatttattcattacgcatgt 379  Q
    | | |  || ||||||||||||  ||| |||||  | |||| |||| | | | || ||  |||||| |||||||||||||||||||||||||| ||| ||    
T  15917567 tggcgcgttgtggccattggtgcaggcatggctcagtgttgtaggggtcggttctcaggctatttcagaccattttttgcaatttattcattatgcaggt 15917468  T
Q  380 tgcttg-aaattgcgaagatcttatttccatttcatttggcttcagtgtgtttgggt 435  Q
     ||| | |||| |||| |||||| |||||| ||  |||| ||||| |||||||||||    
T  15917467 ggctcgaaaatcgcgacgatcttttttccacttggtttgacttcaatgtgtttgggt 15917411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 266
Target Start/End: Original strand, 38604362 - 38604587
Alignment:
Q  41 gtgtatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgttt 140  Q
    |||||||||||| | |||| ||||||||| ||| | || |||| ||||||||||||||| |||||||||||||  ||||| ||| | || || ||||  |    
T  38604362 gtgtatgacatgttgacatcacaggaacaacctaattttcatcaaaatatggagttaatctggcataaacaagtacctctaaaagtttcaatccttgcat 38604461  T
Q  141 ggcggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgtcactggttgtggacacgt 240  Q
    ||| ||  || ||||||||||||||||| | ||| |||| |||| | ||||| ||| ||    ||||||  ||||| |||||| | || ||||| || ||    
T  38604462 ggctgctgttaagagatcgtttacctacaatagtcaatttggcatatcgtggcatccttctcatggaggctcggttatgtgtctcaggctgtgggcatgt 38604561  T
Q  241 ggaagatgtgaatcacttgtttttgt 266  Q
     |||||||| |||||  |||||||||    
T  38604562 tgaagatgtaaatcatgtgtttttgt 38604587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 201 - 325
Target Start/End: Complemental strand, 12645528 - 12645404
Alignment:
Q  201 ctttggaggtgcggttgtgtgtcactggttgtggacacgtggaagatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggt 300  Q
    |||||||||  ||||| ||||| || || ||||| || || |||||||||| ||| |||||||||||||||||||||||| | |  || |||||  ||||    
T  12645528 ctttggaggctcggttttgtgttacagggtgtgggcatgttgaagatgtgactcatttgtttttgtcttgcccaatttttggcgcattgtggcctatggt 12645429  T
Q  301 gagggcttggcttggggttgaaggg 325  Q
    | ||||||||||||| || ||||||    
T  12645428 gcgggcttggcttggtgtcgaaggg 12645404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 44 - 222
Target Start/End: Complemental strand, 4552318 - 4552140
Alignment:
Q  44 tatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggc 143  Q
    ||||||||||| |||| |||||| || ||  ||||||| |  |||||||| ||||| ||||||||| | | |||||||||| | ||||| |||| |||||    
T  4552318 tatgacatgctgacatcacaggagcagccccagttacaccataatatggacttaatttggcataaataggttcctcttaaagtatctatccttgcttggc 4552219  T
Q  144 ggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgt 222  Q
    | | | |||| ||||| |||||||| ||| | |||| |||||| ||||| ||  | ||| |||||| |||||| |||||    
T  4552218 gacttctgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgt 4552140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 441
Target Start/End: Original strand, 15958777 - 15959202
Alignment:
Q  19 ggtggcgggtattcagttcgtggtgtat--gacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctc 116  Q
    ||||| |||||||||||||| ||||| |  |||||||| |||| ||||||||| | | ||||||||| ||||||| ||||||||||||||||||| | ||    
T  15958777 ggtggtgggtattcagttcgcggtgtgtctgacatgctgacatcacaggaacaacttcagttacatccaaatatgaagttaatatggcataaacaggttc 15958876  T
Q  117 ctcttaaaatctctatgcttgtttggcggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgcggtt 216  Q
    |||||||| ||||||| |||| |||||||| |||||| |||| |||||||||||||| ||||| |||||||| |||||||||| |||||||||||| |||    
T  15958877 ctcttaaagtctctattcttgcttggcggcttttgagggatcatttacctacgaaagcaaatttggcaaaccatggtatcattcctttggaggtgcagtt 15958976  T
Q  217 gtgtgtcactggttgtggacacgtggaagatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgag-ggcttggcttgg 315  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||| ||||||||||||    
T  15958977 gtgtgtcactgattgtgggcacgtggaagatgtgaatcacttgtttttatcttgcccaatttttggtgccttatggccattggtgagaggcttggcttgg 15959076  T
Q  316 ggttgaagggcttgatccttagcatatttcggaccattttttgcaatttattcattacgcatgttgcttgaaattgcgaagatcttatttccatttcatt 415  Q
    |||||||||| || ||||| |||||||||| |||||||||| ||||||| ||||||||||| |||||||||||| ||||||||||| ||||||||| |||    
T  15959077 ggttgaaggggttcatcctcagcatatttcagaccatttttcgcaatttgttcattacgcaggttgcttgaaatcgcgaagatcttttttccatttgatt 15959176  T
Q  416 tggcttcagtgtgtttgggtcctatg 441  Q
    |||||| |||||  ||||| ||||||    
T  15959177 tggcttaagtgtaattgggacctatg 15959202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 40 - 435
Target Start/End: Original strand, 14372978 - 14373373
Alignment:
Q  40 ggtgtatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtt 139  Q
    ||||||||||||||| ||||  |||||||| ||| ||||||||     |||||| ||||| ||||||||||| |  ||||| ||| | ||||| |||| |    
T  14372978 ggtgtatgacatgctgacatcccaggaacagcctcagttacattcttctatggatttaatttggcataaacaggtacctctaaaagtatctattcttgct 14373077  T
Q  140 tggcggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgtcactggttgtggacacg 239  Q
    |||| || ||||||  |  | ||||||||||||| ||||| |||||||||||| || |||||| |||||| ||||||||||||  | |||| ||| || |    
T  14373078 tggcagcttttgaggaacggcttacctacgaaaggaaatttggcaaaccgtggcattatttctatggaggggcggttgtgtgtttccggttatgggcatg 14373177  T
Q  240 tggaagatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggcttggggttgaagggcttgatccttagca 339  Q
      |||||||| ||||| |||||||||||||| ||| ||||| ||| ||||||| | |||||| |||   |||| ||||||| |||  ||||| || ||      
T  14373178 atgaagatgtaaatcatttgtttttgtcttgtccattttttggtgccttatggtctttggtgcgggagcggctgggggttgtaggcgttgattctcagtc 14373277  T
Q  340 tatttcggaccattttttgcaatttattcattacgcatgttgcttgaaattgcgaagatcttatttccatttcatttggcttcagtgtgtttgggt 435  Q
    |||  || | |||||||||||||||||||| || ||  || | |||||||  ||  |||| |  |||||||| ||||||||||||||| |||||||    
T  14373278 tatgacgaatcattttttgcaatttattcagtatgctggtagtttgaaatcacgtcgatcattcttccatttgatttggcttcagtgtttttgggt 14373373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 44 - 312
Target Start/End: Original strand, 24767415 - 24767683
Alignment:
Q  44 tatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggc 143  Q
    ||||||||||| |||| |||||| || || |||||||||| ||||||||||||||| | ||||||||| | |||| | ||| ||||||| |||| ||| |    
T  24767415 tatgacatgctgacatcacaggagcagccctagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttgac 24767514  T
Q  144 ggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgtcactggttgtggacacgtgga 243  Q
    | | | | || ||||| |||||||| |||   |||| |||||| ||||| ||  |  ||||||||| ||||||||||||   |||||| ||  |||| ||    
T  24767515 gacttcttagggatcggttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaacgttga 24767614  T
Q  244 agatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggct 312  Q
    |||||| ||| | |||||||||||||| |||| |||||||| |||||| ||||||||| |||| |||||    
T  24767615 agatgttaataatttgtttttgtcttgtccaacttttagtgccttatgaccattggtgcgggcatggct 24767683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 327 - 440
Target Start/End: Complemental strand, 32536761 - 32536648
Alignment:
Q  327 ttgatccttagcatatttcggaccattttttgcaatttattcattacgcatgttgcttgaaattgcgaagatcttatttccatttcatttggcttcagtg 426  Q
    |||||||| | |||||||||||  |||||||||||||||||||||||||| |||| || ||||||| |||||||| ||| ||||| ||||| ||||||||    
T  32536761 ttgatcctcaacatatttcggattattttttgcaatttattcattacgcaggttgtttaaaattgcaaagatctttttttcatttgatttgacttcagtg 32536662  T
Q  427 tgtttgggtcctat 440  Q
    ||||||||||||||    
T  32536661 tgtttgggtcctat 32536648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 86 - 312
Target Start/End: Complemental strand, 2553744 - 2553518
Alignment:
Q  86 aatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggcggcatttgagagatcgtttacctacgaaagtaaattcggcaa 185  Q
    |||||||||||||| ||||||||||| | |||||| ||| | ||||| |||| |||||| | ||||| |||||| |||||||| |||   |||| |||||    
T  2553744 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaa 2553645  T
Q  186 accgtggtatcatttctttggaggtgcggttgtgtgtcactggttgtggacacgtggaagatgtgaatcacttgtttttgtcttgcccaatttttagtgt 285  Q
    ||||||| ||  |  ||||||||| || |||||||||  |||| |||||  |||| |||||||| ||||| ||||||||||||||   || ||||||||     
T  2553644 accgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgc 2553545  T
Q  286 cttatggccattggtgagggcttggct 312  Q
     ||||| ||| ||||| |||| |||||    
T  2553544 attatgaccaatggtgcgggcatggct 2553518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 44 - 301
Target Start/End: Original strand, 18651225 - 18651482
Alignment:
Q  44 tatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggc 143  Q
    ||||||||||| |||| |||||| || ||  ||||| ||| ||||||||||||||| ||||||||||| | |||||| ||| ||||||| |||| |||||    
T  18651225 tatgacatgctgacatcacaggagcagccccagttagatcaaaatatggagttaatttggcataaacaggttcctctcaaagtctctatccttgcttggc 18651324  T
Q  144 ggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgtcactggttgtggacacgtgga 243  Q
    | | | |||| ||||| |||||||| |||   |||| || ||||||||| ||  |  ||||||| | ||||||||||||| |||| || ||   ||| ||    
T  18651325 gacttctgagggatcggttacctacaaaaaataatttggaaaaccgtgggattttacctttggatgcgcggttgtgtgtctctggatgcgggaccgttga 18651424  T
Q  244 agatgtgaatcacttgtt-tttgtcttgcccaatttttagtgtcttatggccattggtg 301  Q
    |||||| ||||||||||| |||||  || |||| |||||| | ||||| ||||||||||    
T  18651425 agatgtcaatcacttgttctttgt-gtgtccaacttttagcgccttattgccattggtg 18651482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 34 - 435
Target Start/End: Original strand, 20883012 - 20883415
Alignment:
Q  34 gttcgtggtgtat--gacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctcta 131  Q
    |||||||||||||  |||||| | |||| ||||||||| ||  |  | |||| ||||||||||||||| ||||||||| | | |||| | ||| | ||||    
T  20883012 gttcgtggtgtatatgacatgttgacatcacaggaacaaccacatgttcatcaaaatatggagttaatctggcataaataggttcctttaaaagtttcta 20883111  T
Q  132 tgcttgtttggcggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgtcactggttg 231  Q
    | |||| ||||||||  ||||| ||| |||||||||| |||   || | || | | ||||| || || ||| ||||||  ||||| |||||||| || ||    
T  20883112 tccttgcttggcggctgttgagggattgtttacctactaaatcgaacttggtagatcgtggcattatatctgtggaggctcggttttgtgtcacgggatg 20883211  T
Q  232 tggacacgtggaagatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggcttggggttgaagggcttgat 331  Q
    ||| || || |||||| |||||||  ||||||||||||| ||||||||  |||  || |||||  ||||| || | |||||||| || |||||| | |||    
T  20883212 tgggcatgttgaagatatgaatcatatgtttttgtcttgtccaattttcggtgcattgtggcctatggtgcggacatggcttggtgtcgaaggggtagat 20883311  T
Q  332 ccttagcatatttcggaccattttttgcaatttattcattacgcatgttgcttgaaattgcgaagatcttatttccatttcatttggcttcagtgtgttt 431  Q
     || |   ||| || ||||||||| ||||||||||| | || ||| || |||||||||  ||  ||||||  || ||||| ||||||||||||||||| |    
T  20883312 tctcatgctatctcagaccattttgtgcaatttattgaatatgcaggtggcttgaaatcccgtcgatctttatttcatttgatttggcttcagtgtgtat 20883411  T
Q  432 gggt 435  Q
    ||||    
T  20883412 gggt 20883415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 325
Target Start/End: Original strand, 21630086 - 21630381
Alignment:
Q  34 gttcgtggtgtat--gacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctcta 131  Q
    |||||||||||||  ||| || | |||| ||||||||| ||| |  | |||| ||||||||||||||| |||||||| || | |||| | ||| | ||||    
T  21630086 gttcgtggtgtatatgacttgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaccaggttcctttaaaagtttcta 21630185  T
Q  132 tgcttgtttggcggcatttgagagatcgtttacctacgaaagtaaa--ttcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgtcactggt 229  Q
    | ||||||||||| |  ||||| |||||||||||||| |||  |||  || ||   | ||||| || || ||| ||||    ||||| ||||| || ||     
T  21630186 tccttgtttggcgactattgagggatcgtttacctacaaaatcaaaaatttggtggaacgtgggattatatctgtggaaaatcggttttgtgtaacggga 21630285  T
Q  230 tgtggacacgtggaagatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggcttggggttgaaggg 325  Q
    || || || || |||||||||||||| || ||||||||||| ||||||||| |||  || ||||| |||||| ||||||||||||| || ||||||    
T  21630286 tgcgggcaggttgaagatgtgaatcatttatttttgtcttgtccaatttttggtgctttgtggcctttggtgcgggcttggcttggtgtcgaaggg 21630381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 325
Target Start/End: Original strand, 17606523 - 17606606
Alignment:
Q  242 gaagatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggcttggggttgaaggg 325  Q
    |||||||||||||| || ||||||||||| ||||||||| |||  || ||| | |||||| ||||||||||||| || ||||||    
T  17606523 gaagatgtgaatcatttatttttgtcttgtccaatttttggtgcattgtggtctttggtgcgggcttggcttggtgtcgaaggg 17606606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 325
Target Start/End: Original strand, 17573814 - 17573927
Alignment:
Q  212 cggttgtgtgtcactggttgtggacacgtggaagatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggc 311  Q
    ||||| ||||| || || ||||| || || |||||||||||||| || ||||||||||| || | |||| ||| ||| |||||  ||||| |||||||||    
T  17573814 cggttttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgccttgtggcctctggtgcgggcttggc 17573913  T
Q  312 ttggggttgaaggg 325  Q
    |||| || ||||||    
T  17573914 ttggtgtcgaaggg 17573927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 325
Target Start/End: Original strand, 17579240 - 17579353
Alignment:
Q  212 cggttgtgtgtcactggttgtggacacgtggaagatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggc 311  Q
    ||||| ||||| || || ||||| || || |||||||||||||| || ||||||||||| || | |||| ||| ||| |||||  ||||| |||||||||    
T  17579240 cggttttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgccttgtggcctctggtgcgggcttggc 17579339  T
Q  312 ttggggttgaaggg 325  Q
    |||| || ||||||    
T  17579340 ttggtgtcgaaggg 17579353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 222
Target Start/End: Complemental strand, 12734232 - 12734096
Alignment:
Q  86 aatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggcggcatttgagagatcgtttacctacgaaagtaaattcggcaa 185  Q
    |||||||| ||||| ||||||||||| | |||||| ||| | ||||| |||| |||||| | | |||| ||||| |||||||| ||| | |||| || ||    
T  12734232 aatatggatttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggtaa 12734133  T
Q  186 accgtggtatcatttctttggaggtgcggttgtgtgt 222  Q
     |||||| ||  | ||| |||||| |||||| |||||    
T  12734132 cccgtggcattctatctctggaggagcggttatgtgt 12734096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 372
Target Start/End: Complemental strand, 17330815 - 17330783
Alignment:
Q  340 tatttcggaccattttttgcaatttattcatta 372  Q
    |||||| ||||||||||||||||||||||||||    
T  17330815 tatttcagaccattttttgcaatttattcatta 17330783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 168
Target Start/End: Original strand, 17606361 - 17606449
Alignment:
Q  80 catctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggcggcatttgagagatcgtttacctac 168  Q
    |||| ||||||||||||||| ||||||||||| | |||| | ||| | ||||| |||| |||||| |  ||||| |||| |||||||||    
T  17606361 catcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcatttacctac 17606449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 100 - 427
Target Start/End: Original strand, 34137010 - 34137337
Alignment:
Q  100 atggcataaacaagctcctcttaaaatctctatgcttgtttggcggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatt 199  Q
    |||||||||||| |  ||||| ||| ||||||| |||| |||||||| | |||  ||||||||||||||||||| ||||| ||||||||| |||||||||    
T  34137010 atggcataaacaggtacctctcaaagtctctattcttgcttggcggcttatgatggatcgtttacctacgaaagaaaatttggcaaaccgcggtatcatt 34137109  T
Q  200 tctttggaggtgcggttgtgtgtcactggttgtggacacgtggaagatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattgg 299  Q
     || |||||| |||||||||||  |||||||||||   |||  || |||||||||||||||||||||||||||||| |||| ||| ||| ||||||||||    
T  34137110 cctgtggaggggcggttgtgtgctactggttgtgggtgcgttcaaaatgtgaatcacttgtttttgtcttgcccaaattttggtgccttgtggccattgg 34137209  T
Q  300 tgagggcttggcttggggttgaagggcttgatccttagcatatttcggaccattttttgcaatttattcattacgcatgttgcttgaaattgcgaagatc 399  Q
    ||||||  ||||| ||||||||||   |||| ||| ||||||||| ||||||||||||||||||||||||||| ||| |||| |||||||  || ||||     
T  34137210 tgagggagtggctaggggttgaagctgttgaccctcagcatattttggaccattttttgcaatttattcattatgcaggttgtttgaaatcccgtagata 34137309  T
Q  400 ttatttccatttcatttggcttcagtgt 427  Q
    ||   ||||||| |||||||||||||||    
T  34137310 tttgctccatttgatttggcttcagtgt 34137337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 44 - 312
Target Start/End: Complemental strand, 13396537 - 13396269
Alignment:
Q  44 tatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggc 143  Q
    ||||||||||| |||| |||||| || ||  | |||||||   ||||||||||||| ||||||||||||| |||||| ||| | ||||| |||| |||||    
T  13396537 tatgacatgctgacatcacaggagcagccccaattacatcatcatatggagttaatttggcataaacaagttcctctcaaagtatctatccttgcttggc 13396438  T
Q  144 ggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgtcactggttgtggacacgtgga 243  Q
    | |   |||||||||| |||||||| |||   |||| |||||||||||| ||  |  ||||||||| ||||||||||||  |||| |||||  |||| ||    
T  13396437 gactcctgagagatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttga 13396338  T
Q  244 agatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggct 312  Q
    |||||| ||||| ||||||||||||||   || ||||||||  ||||||||| ||||| |||| |||||    
T  13396337 agatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatggccaatggtgcgggcatggct 13396269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 44 - 315
Target Start/End: Complemental strand, 9922750 - 9922479
Alignment:
Q  44 tatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggc 143  Q
    ||||||||||| |||| |||||| || ||| | ||||||| |||  |||||||||| ||||||| ||| | |||||| ||| | ||||| ||||  || |    
T  9922750 tatgacatgctgacatcacaggagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttcctctcaaagtttctatccttgcatgac 9922651  T
Q  144 ggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgtcactggttgtggacacgtgga 243  Q
    | | | |||| ||||| |||||||| ||||  |||| |||||||||||| ||  |  || |||||| |||| |||||||  ||||||||||  | || ||    
T  9922650 gacttctgagggatcggttacctacaaaagataatttggcaaaccgtggcattttacctctggaggcgcggatgtgtgtttctggttgtgggaatgtaga 9922551  T
Q  244 agatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggcttgg 315  Q
    |||||| ||||| ||||||||||||||  ||| |||||||| |||||||||||||||| | || ||||||||    
T  9922550 agatgtcaatcatttgtttttgtcttgtgcaacttttagtgccttatggccattggtgcgagcatggcttgg 9922479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 90 - 270
Target Start/End: Complemental strand, 32266667 - 32266487
Alignment:
Q  90 tggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggcggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccg 189  Q
    |||||||||| ||||||||||| | |||||| ||| | ||||| |||| |||| | | |||||||||||| ||||||||||||   |||| |||||||||    
T  32266667 tggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggagacttttgagagatcggttacctacgaaaagtaatttggcaaaccg 32266568  T
Q  190 tggtatcatttctttggaggtgcggttgtgtgtcactggttgtggacacgtggaagatgtgaatcacttgtttttgtcttg 270  Q
    ||| ||  |  ||||||||| ||||||||||||  |||| |||||  |||| |||||||| ||||| ||||||||||||||    
T  32266567 tggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttg 32266487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 85 - 301
Target Start/End: Complemental strand, 5181778 - 5181562
Alignment:
Q  85 aaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggcggcatttgagagatcgtttacctacgaaagtaaattcggca 184  Q
    |||||||||| |||| ||||||||||| |  ||||| ||| ||| ||| |||||||||||||   |||| |||| |||||| || ||||  |||| |  |    
T  5181778 aaatatggagataatttggcataaacaggtgcctctaaaagtctatattcttgtttggcggcggctgagggatcatttaccaacaaaagataatttgata 5181679  T
Q  185 aaccgtggtatcatttctttggaggtgcggttgtgtgtcactggttgtggacacgtggaagatgtgaatcacttgtttttgtcttgcccaatttttagtg 284  Q
    |||||| |  ||||| ||||||||| |||||||||| ||||| | || || || || ||||||| ||||||  |||||||||||||||||| |||| |||    
T  5181678 aaccgtcgagtcattcctttggaggcgcggttgtgtatcactagatgcgggcaagttgaagatgagaatcatatgtttttgtcttgcccaacttttggtg 5181579  T
Q  285 tcttatggccattggtg 301  Q
     ||| ||||||||||||    
T  5181578 ccttgtggccattggtg 5181562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 44 - 428
Target Start/End: Complemental strand, 2170491 - 2170105
Alignment:
Q  44 tatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggc 143  Q
    ||||||||| | |||| ||||||||| ||| |  | |||| ||||||||||||||| ||||||||||| | |||| | ||| | ||||| |||| |||||    
T  2170491 tatgacatgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatctggcataaacaggttcctttaaaagtttctatccttgcttggc 2170392  T
Q  144 ggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgcggt--tgtgtgtcactggttgtggacacgtg 241  Q
    | |  ||||| |||||||||||||| |||  ||||| || | | ||||| ||  | ||| ||||    ||||  | ||||| || || ||||| || ||     
T  2170391 gaccgttgagggatcgtttacctactaaatcaaatttggtagaacgtgggattctatctgtggaaaatcggtgttttgtgtaacggggtgtgggcaggtt 2170292  T
Q  242 gaagatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggcttggggttgaagggcttgatccttagcata 341  Q
    |||||||||||||| |||||||||||||| ||||||||| |||  || |||||  ||||| ||||||||||||| || |||||| | ||| || |   ||    
T  2170291 gaagatgtgaatcatttgtttttgtcttgtccaatttttggtgcattgtggcctatggtgcgggcttggcttggtgtcgaaggggtagattctcatgcta 2170192  T
Q  342 tttcggaccattttttgcaatttattcattacgcatgttgcttgaaattgcgaagat-cttatttccatttcatttggcttcagtgtg 428  Q
    | || || |||||| ||||||||||| | || ||| || |||||||||  ||  ||| ||||||| ||||| ||||||||||||||||    
T  2170191 tctcagatcattttgtgcaatttattgaatatgcaggtggcttgaaatctcgtcgatccttattt-catttgatttggcttcagtgtg 2170105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 34 - 313
Target Start/End: Complemental strand, 37434293 - 37434012
Alignment:
Q  34 gttcgtggtgtat--gacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctcta 131  Q
    |||||||||||||  ||| || | |||| ||||||||| ||| |  | |||| ||||||||||||||| ||||||||||| | |||| | ||| ||||||    
T  37434293 gttcgtggtgtatatgacttgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacatgttcctttaaaagtctcta 37434194  T
Q  132 tgcttgtttggcggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgtcactggttg 231  Q
    | |||| |||||| |  ||||| |||||||||||||| |||  ||||| ||   | ||||| || || ||| ||||    ||||| ||||| || || ||    
T  37434193 ttcttgcttggcgactgttgagggatcgtttacctactaaatcaaatttggtggaacgtgggattatatctgtggaaaatcggttttgtgtaacgggatg 37434094  T
Q  232 tggacacgtggaagatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggctt 313  Q
     || || || |||||||||||||| || ||||||||||| ||||||||| |||  || ||||| |||||| |||||||||||    
T  37434093 cgggcaggttgaagatgtgaatcatttatttttgtcttgtccaatttttggtgcattgtggcctttggtgcgggcttggctt 37434012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 242 - 429
Target Start/End: Complemental strand, 17699433 - 17699246
Alignment:
Q  242 gaagatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggcttggggttgaagggcttgatccttagcata 341  Q
    |||||||||||||| || ||||||||||| ||||||||| |||  || || || |||||| ||||||||||||| || |||||| | ||| || |   ||    
T  17699433 gaagatgtgaatcatttatttttgtcttgtccaatttttggtgcattgtgacctttggtgcgggcttggcttggtgtcgaaggggtagattctcatgcta 17699334  T
Q  342 tttcggaccattttttgcaatttattcattacgcatgttgcttgaaattgcgaagat-cttatttccatttcatttggcttcagtgtgt 429  Q
    | || || |||||| ||||||||||| | || ||| || |||||||||||||  ||| ||||||| ||||| |||||| ||||||||||    
T  17699333 tctcagatcattttgtgcaatttattgaatatgcaggtggcttgaaattgcgccgatccttattt-catttgatttggtttcagtgtgt 17699246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 44 - 312
Target Start/End: Original strand, 41665360 - 41665628
Alignment:
Q  44 tatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggc 143  Q
    ||||||||||| |||| |||||| || ||  | |||||||   ||||||||||||| ||||||||||| | |||||| ||| | ||||| |||| |||||    
T  41665360 tatgacatgctgacatcacaggagcagccccaattacatcatcatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggc 41665459  T
Q  144 ggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgtcactggttgtggacacgtgga 243  Q
    |     | |||||||  |||||||| |||   |||| |||||||| ||  ||  |  ||||||||| ||||||||||||  |||| |||||  |||| ||    
T  41665460 gattcctaagagatcagttacctacaaaaaataatttggcaaaccatgacattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttga 41665559  T
Q  244 agatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggct 312  Q
    |||||| ||||| ||||||||||||||   || ||||||||  ||||||||| ||||| |||| |||||    
T  41665560 agatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatggccaatggtgcgggcatggct 41665628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 212 - 431
Target Start/End: Complemental strand, 43270431 - 43270212
Alignment:
Q  212 cggttgtgtgtcactggttgtggacacgtggaagatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggc 311  Q
    ||||| ||||| || |||||||| || || |||||||||||||| |||||||||||||| ||||||||| |||  || ||| |  ||||| |||||||||    
T  43270431 cggttttgtgtaacgggttgtgggcaggttgaagatgtgaatcatttgtttttgtcttgtccaatttttggtgcattgtggtctatggtgcgggcttggc 43270332  T
Q  312 ttggggttgaagggcttgatccttagcatatttcggaccattttttgcaatttattcattacgcatgttgcttgaaattgcgaagat-cttatttccatt 410  Q
    |||| || |||||| | ||| || |   ||| || || |||||| ||||||||||| | || ||| || |||||||||  ||  | | ||||||| ||||    
T  43270331 ttggtgtcgaaggggtagattctcatgctatctcagatcattttgtgcaatttattgaatatgcaggtggcttgaaatctcgtcgttccttattt-catt 43270233  T
Q  411 tcatttggcttcagtgtgttt 431  Q
    | |||||||||||||||||||    
T  43270232 taatttggcttcagtgtgttt 43270212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 41 - 432
Target Start/End: Complemental strand, 13200275 - 13199884
Alignment:
Q  41 gtgtatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgttt 140  Q
    |||||||| ||| | |||| ||||||||| ||| |  | |||| ||||||||||||| | ||||||||||| | |||||| ||| | || || |||| ||    
T  13200275 gtgtatgatatgttgacatcacaggaacaacctcatgttcatcaaaatatggagttagtttggcataaacaggttcctctaaaagtttcaatccttgctt 13200176  T
Q  141 ggcggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgtcactggttgtggacacgt 240  Q
    ||| ||  ||||| |||||||||||||| |||   |||| |||| | ||  | ||  |  || ||||||  ||||| ||||| ||||| ||||| || ||    
T  13200175 ggcagctattgagggatcgtttacctacaaaatacaatttggcagagcgcagaattctacctatggaggctcggttttgtgttactgggtgtgggcatgt 13200076  T
Q  241 ggaagatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggcttggggttgaagggcttgatccttagcat 340  Q
     |||||||||| |||  ||||||||||||||||||||||| | |  || |||||  ||||| ||||||||||||| || ||||   | ||| ||     |    
T  13200075 tgaagatgtgactcatatgtttttgtcttgcccaatttttggcgcattgtggcctatggtgcgggcttggcttggtgtcgaagatgtagattctcttgtt 13199976  T
Q  341 atttcggaccattttttgcaatttattcattacgcatgttgcttgaaattgcgaagatcttatttccatttcatttggcttcagtgtgtttg 432  Q
    ||||| || |||||| ||||||||||| | || ||| |  |||||||||| ||  |||| |  |||||||| |||||||| |||||||||||    
T  13199975 atttcagatcattttatgcaatttattgaatatgcaggaggcttgaaattccgtcgatccttattccatttgatttggctgcagtgtgtttg 13199884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 202 - 279
Target Start/End: Complemental strand, 2529877 - 2529800
Alignment:
Q  202 tttggaggtgcggttgtgtgtcactggttgtggacacgtggaagatgtgaatcacttgtttttgtcttgcccaatttt 279  Q
    ||||||||  ||||| ||||| || || ||||| || || |||||||||| ||| |||||||||||||||||||||||    
T  2529877 tttggaggctcggttttgtgttacagggtgtgggcatgttgaagatgtgactcatttgtttttgtcttgcccaatttt 2529800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 270
Target Start/End: Complemental strand, 7924535 - 7924309
Alignment:
Q  44 tatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggc 143  Q
    ||||||||||| |||| |||||| || ||  ||||||| |  ||| |||| ||||| ||||||||||| |  ||||| ||| ||||||| |||| |||||    
T  7924535 tatgacatgctgacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggc 7924436  T
Q  144 ggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgtcactggttgtggacacgtgga 243  Q
    | |   |||| ||||| |||||||| ||| | |||| |||||| ||||| ||  | ||| |||||| |||||| || ||  |||| |||||    || ||    
T  7924435 gactaatgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcga 7924336  T
Q  244 agatgtgaatcacttgtttttgtcttg 270  Q
    |||||| | ||| ||||||||||||||    
T  7924335 agatgttactcatttgtttttgtcttg 7924309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 325
Target Start/End: Complemental strand, 20824277 - 20824164
Alignment:
Q  212 cggttgtgtgtcactggttgtggacacgtggaagatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggc 311  Q
    ||||| ||||| || || ||||| || || |||||||||||||| || ||||||||||| || | |||| |||  || |||||  ||||| |||||||||    
T  20824277 cggttttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggc 20824178  T
Q  312 ttggggttgaaggg 325  Q
    |||| || ||||||    
T  20824177 ttggtgtcgaaggg 20824164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 168
Target Start/End: Complemental strand, 20824409 - 20824321
Alignment:
Q  80 catctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggcggcatttgagagatcgtttacctac 168  Q
    |||| ||||||||||||||| ||||||||||| | |||| | ||| | ||||| |||| |||||| |  ||||| ||||| ||||||||    
T  20824409 catcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgcttacctac 20824321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 15 - 424
Target Start/End: Original strand, 11587158 - 11587569
Alignment:
Q  15 tcagggtggcgggtattcagttcgtggtgt--atgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaa 112  Q
    |||||| ||||| ||||||||  |||||||  |||||||||| |||| ||||||||| ||| |||| |||| |  |||||||||||| ||||||||| |     
T  11587158 tcagggaggcggatattcagtctgtggtgtgtatgacatgctgacatcacaggaacagcctcagttgcatccatctatggagttaatttggcataaatag 11587257  T
Q  113 gctcctcttaaaatctctatgcttgtttggcggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgc 212  Q
       ||| | ||| | ||||| |||| |||||||| | ||||  |||||||||||||||||| ||||| |||||||||  ||| |||| || |||||| ||    
T  11587258 atacctatcaaagtatctattcttgcttggcggcttctgaggaatcgtttacctacgaaagaaaatttggcaaaccgcagtaacattcctatggaggggc 11587357  T
Q  213 ggttgtgtgtcactggttgtggacacgtggaagatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggct 312  Q
    ||||||||   |||||||| |  ||||| ||| |||||||||||||||||||||||||||||| |||| |||  || ||||||||||||||||  |||||    
T  11587358 ggttgtgtactactggttgcgagcacgttgaaaatgtgaatcacttgtttttgtcttgcccaaattttggtgctttgtggccattggtgagggagtggct 11587457  T
Q  313 tggggttgaagggcttgatccttagcatatttcggaccattttttgcaatttattcattacgcatgttgcttgaaattgcgaagatcttatttccatttc 412  Q
     | |||||||||  |||| | | |||||||||||||||||||||||||||| |||||||| ||| || ||| || ||  || |||||||  || |||||     
T  11587458 agaggttgaaggtgttgaccgtcagcatatttcggaccattttttgcaattcattcattatgcaggtagctcgacatcccgtagatctttatttcatttg 11587557  T
Q  413 atttggcttcag 424  Q
    ||||||||||||    
T  11587558 atttggcttcag 11587569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 44 - 312
Target Start/End: Complemental strand, 7404062 - 7403794
Alignment:
Q  44 tatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggc 143  Q
    ||||||||||| |||| |||||| || ||  ||||||||| ||||||| ||||||| ||||||||||||| || | | ||| ||||||| |||| |||||    
T  7404062 tatgacatgctgacatcacaggagcagccccagttacatcaaaatatgaagttaatttggcataaacaagttcatttcaaagtctctatccttgcttggc 7403963  T
Q  144 ggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgtcactggttgtggacacgtgga 243  Q
    | | | |||| ||||| |||||||| |||   |||| |||||||||||| ||  |   |||||||| ||||||||||||| |||| || ||  |||| ||    
T  7403962 gacttctgagggatcggttacctacaaaaaagaatttggcaaaccgtggcattttacgtttggaggcgcggttgtgtgtctctggatgcgggaacgttga 7403863  T
Q  244 agatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggct 312  Q
    |||||| ||||| |||||||||||||| |||| |||||||| |||||||||||||||| |||| |||||    
T  7403862 agatgtcaatcatttgtttttgtcttgtccaacttttagtgccttatggccattggtgtgggcatggct 7403794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 86 - 301
Target Start/End: Complemental strand, 15740328 - 15740113
Alignment:
Q  86 aatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggcggcatttgagagatcgtttacctacgaaagtaaattcggcaa 185  Q
    |||||||||||||| ||||||||||| | |||||| ||| | ||||| |||| |||| | | |||| ||||||| |||||||| |||   |||| | |||    
T  15740328 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggagacttttgcgagatcggttacctacaaaaaataatttgacaa 15740229  T
Q  186 accgtggtatcatttctttggaggtgcggttgtgtgtcactggttgtggacacgtggaagatgtgaatcacttgtttttgtcttgcccaatttttagtgt 285  Q
     |||||| ||  |  ||||||||| ||||||||||||  |||| |||||  | ||  ||||||| ||||| |||||||||||||| | || |||| |||     
T  15740228 gccgtggcattttacctttggaggcgcggttgtgtgtttctgggtgtgggaatgttaaagatgttaatcatttgtttttgtcttgtctaacttttggtgc 15740129  T
Q  286 cttatggccattggtg 301  Q
    ||||||||||||||||    
T  15740128 cttatggccattggtg 15740113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 75 - 301
Target Start/End: Original strand, 1828562 - 1828788
Alignment:
Q  75 agttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggcggcatttgagagatcgtttacctacgaaagt 174  Q
    |||||||||  |||||||||||||| ||||||||||| | |||||| ||| | ||||| |||| |||| | |  ||| ||||| | |||||||| |||      
T  1828562 agttacatcataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggagactattgcgagataggttacctacaaaaac 1828661  T
Q  175 aaattcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgtcactggttgtggacacgtggaagatgtgaatcacttgtttttgtcttgccca 274  Q
     |||| |||||||||||| ||  |  ||||||||| ||||||||||||  |||| |||||  | || ||||||||  |||| ||||||||||||||  ||    
T  1828662 taatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttgatcatttgtttttgtcttgtgca 1828761  T
Q  275 atttttagtgtcttatggccattggtg 301  Q
    | |||| |||  ||||| |||||||||    
T  1828762 acttttggtgctttatgaccattggtg 1828788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 242 - 325
Target Start/End: Complemental strand, 12697764 - 12697681
Alignment:
Q  242 gaagatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggcttggggttgaaggg 325  Q
    |||||||||||||| || ||||||||||| ||||||||| |||  |||||||| |||||| ||||||||||||| || ||||||    
T  12697764 gaagatgtgaatcatttatttttgtcttgtccaatttttggtgcattatggcctttggtgcgggcttggcttggtgtcgaaggg 12697681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 87 - 312
Target Start/End: Complemental strand, 19755373 - 19755145
Alignment:
Q  87 atatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggcggcatttgagagatcgtttacctacgaaagtaaattcggcaaa 186  Q
    ||||||||||||| ||||||||||| | |||||| ||| | ||||| |||| |||||| |   |||||||||| |||||||| |||   |||| ||||||    
T  19755373 atatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgactcctgagagatcggttacctacaaaaaataatttggcaaa 19755274  T
Q  187 ccgtggtatcattt---ctttggaggtgcggttgtgtgtcactggttgtggacacgtggaagatgtgaatcacttgtttttgtcttgcccaatttttagt 283  Q
    |||||  ||  | |   ||||||||| ||||||||||||  |||| |||||   ||| |||||||| ||||| ||||||||||||||   || |||||||    
T  19755273 ccgtgacattttattacctttggaggcgcggttgtgtgtttctggatgtgggagcgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagt 19755174  T
Q  284 gtcttatggccattggtgagggcttggct 312  Q
    |  |||||| || ||||| |||| |||||    
T  19755173 gcattatggtcaatggtgcgggcatggct 19755145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 87 - 312
Target Start/End: Original strand, 19784433 - 19784661
Alignment:
Q  87 atatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggcggcatttgagagatcgtttacctacgaaagtaaattcggcaaa 186  Q
    ||||||||||||| ||||||||||| | |||||| ||| | ||||| |||| |||||| |   |||||||||| |||||||| |||   |||| ||||||    
T  19784433 atatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgactcctgagagatcggttacctacaaaaaataatttggcaaa 19784532  T
Q  187 ccgtggtatcattt---ctttggaggtgcggttgtgtgtcactggttgtggacacgtggaagatgtgaatcacttgtttttgtcttgcccaatttttagt 283  Q
    |||||  ||  | |   ||||||||| ||||||||||||  |||| |||||   ||| |||||||| ||||| ||||||||||||||   || |||||||    
T  19784533 ccgtgacattttattacctttggaggcgcggttgtgtgtttctggatgtgggagcgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagt 19784632  T
Q  284 gtcttatggccattggtgagggcttggct 312  Q
    |  |||||| || ||||| |||| |||||    
T  19784633 gcattatggtcaatggtgcgggcatggct 19784661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 343 - 435
Target Start/End: Original strand, 2822327 - 2822419
Alignment:
Q  343 ttcggaccattttttgcaatttattcattacgcatgttgcttgaaattgcgaagatcttatttccatttcatttggcttcagtgtgtttgggt 435  Q
    |||||| |||||| ||||||||||||| || ||| || ||||||||| |||  ||||||  ||||| || |||||||||||||||||||||||    
T  2822327 ttcggatcattttatgcaatttattcaatatgcaggtggcttgaaatcgcgtcgatctttcttccacttgatttggcttcagtgtgtttgggt 2822419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 242 - 325
Target Start/End: Original strand, 4548408 - 4548491
Alignment:
Q  242 gaagatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggcttggggttgaaggg 325  Q
    |||||||||||||| || ||||||||||||||||||||| |||  || |||||  ||||| ||||||||||||| || ||||||    
T  4548408 gaagatgtgaatcatttatttttgtcttgcccaatttttggtgcattgtggcctctggtgtgggcttggcttggtgtcgaaggg 4548491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 242 - 325
Target Start/End: Complemental strand, 8361051 - 8360968
Alignment:
Q  242 gaagatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggcttggggttgaaggg 325  Q
    |||||||||||||| || ||||||||||| ||||||||| |||  || ||||| |||||| ||||||||||||| || ||||||    
T  8361051 gaagatgtgaatcatttatttttgtcttgtccaatttttggtgcattgtggcctttggtgcgggcttggcttggtgtcgaaggg 8360968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 168
Target Start/End: Original strand, 45472736 - 45472824
Alignment:
Q  80 catctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggcggcatttgagagatcgtttacctac 168  Q
    |||| ||||||||||||||| ||||||||||| | |||| | ||| | ||||| ||||||||||| |  ||||| ||||||||||||||    
T  45472736 catcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgtttggcgactgttgagggatcgtttacctac 45472824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 294
Target Start/End: Original strand, 47685932 - 47686136
Alignment:
Q  90 tggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggcggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccg 189  Q
    |||| ||||| || |||||||| | |||||| ||| | ||||| |||| |||||| | |||||||||||| |||||||| |||   |||| |||||||||    
T  47685932 tggacttaatttgacataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagagatcggttacctacaaaacataatttggcaaaccg 47686031  T
Q  190 tggtatcatttctttggaggtgcggttgtgtgtcactggttgtggacacgtggaagatgtgaatcacttgtttttgtcttgcccaatttttagtgtctta 289  Q
    ||| ||  | ||| |||||| |||||| |||||  |||| |||||  | || ||||||||   ||  ||||||||||||||  ||| ||||||||  |||    
T  47686032 tggcattttatctgtggaggagcggttatgtgtttctggatgtgggaatgtcgaagatgtttctcgtttgtttttgtcttgtgcaacttttagtgcatta 47686131  T
Q  290 tggcc 294  Q
    |||||    
T  47686132 tggcc 47686136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 212 - 435
Target Start/End: Complemental strand, 20002699 - 20002476
Alignment:
Q  212 cggttgtgtgtcactggttgtggacacgtggaagatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggc 311  Q
    ||||| |||||||| || ||||| || || ||||||||||||||  ||||||||||||| ||| ||||  |||  || |||||  ||||| |||| ||||    
T  20002699 cggttttgtgtcacgggatgtgggcatgttgaagatgtgaatcatatgtttttgtcttgtccatttttcggtgcattgtggcctatggtgcgggcatggc 20002600  T
Q  312 ttggggttgaagggcttgatccttagcatatttcggaccattttttgcaatttattcattacgcatgttgcttgaaattgcgaagatcttatttccattt 411  Q
    |||  |  |||||| | ||| || |   ||| || || |||||| ||||||||||| | || | | || |||||||||| ||  ||||||  || |||||    
T  20002599 ttgatgccgaaggggtagattctcatgctatctcagatcattttgtgcaatttattgaatatgtaggtggcttgaaattccgtcgatctttatttcattt 20002500  T
Q  412 catttggcttcagtgtgtttgggt 435  Q
     |||||||||||||||||||||||    
T  20002499 gatttggcttcagtgtgtttgggt 20002476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 85 - 168
Target Start/End: Original strand, 55725718 - 55725801
Alignment:
Q  85 aaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggcggcatttgagagatcgtttacctac 168  Q
    ||||||||||||||| ||||||||||||| |||||| ||| | || || |||| ||||||||  ||||| ||||| ||||||||    
T  55725718 aaatatggagttaatttggcataaacaagttcctctaaaagtttcaatccttgcttggcggctattgagggatcgcttacctac 55725801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 432
Target Start/End: Original strand, 17401994 - 17402065
Alignment:
Q  361 atttattcattacgcatgttgcttgaaattgcgaagatcttatttccatttcatttggcttcagtgtgtttg 432  Q
    |||||||||||||||||||||||  ||||  ||| |||||  |||||| || |||||||||| |||||||||    
T  17401994 atttattcattacgcatgttgctctaaatcacgacgatctcttttccacttgatttggcttcggtgtgtttg 17402065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 234
Target Start/End: Original strand, 13270882 - 13271072
Alignment:
Q  44 tatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggc 143  Q
    ||||||||||| |||| |||||| || ||  ||||||| |  ||| |||| ||||| ||||||||||| |  ||||| ||| ||||||| |||| |||||    
T  13270882 tatgacatgctgacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggc 13270981  T
Q  144 ggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgtcactggttgtgg 234  Q
    | |   |||| ||||| |||||||| ||| | |||| |||||| ||||| ||  | ||| |||||| |||||| || || ||||| |||||    
T  13270982 gactaatgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgagttactggatgtgg 13271072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 270
Target Start/End: Original strand, 23642582 - 23642808
Alignment:
Q  44 tatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggc 143  Q
    ||||||||||| |||| |||||| || ||  ||||||| |  ||| |||| ||||| ||||||||||| |  ||||| ||| ||||||| |||| |||||    
T  23642582 tatgacatgctgacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggc 23642681  T
Q  144 ggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgtcactggttgtggacacgtgga 243  Q
    | |   |||| ||||| |||||||| ||| | |||| |||||| ||||| ||  | ||| |||||| |||||| || ||  |||| |||||    || ||    
T  23642682 gactaatgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcga 23642781  T
Q  244 agatgtgaatcacttgtttttgtcttg 270  Q
    |||||| | ||| ||||||||||||||    
T  23642782 agatgttactcatttgtttttgtcttg 23642808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 110
Target Start/End: Original strand, 19735735 - 19735804
Alignment:
Q  41 gtgtatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaac 110  Q
    |||||||||||||| ||||  |||||||| |||  |||||||| |||| ||||||||||  |||||||||    
T  19735735 gtgtatgacatgctgacatcgcaggaacaacctatgttacatcaaaatttggagttaattaggcataaac 19735804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 7e-56; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 15 - 369
Target Start/End: Original strand, 47623037 - 47623391
Alignment:
Q  15 tcagggtggcgggtattcagttcgtgg--tgtatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaa 112  Q
    |||||| |||||||||||||| | |||  ||||||||||||| |||| ||||||||| ||| ||||||||  | ||||||| ||||| |||||||||||     
T  47623037 tcagggaggcgggtattcagtccatggggtgtatgacatgctgacatcacaggaacaacctcagttacattcatatatggaattaatttggcataaacag 47623136  T
Q  113 gctcctcttaaaatctctatgcttgtttggcggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgc 212  Q
    |  ||||| ||| | ||||| |||| |||||||| |||||| || || ||||||||||| | ||||| |||||||||||  || ||| || |||||| ||    
T  47623137 gtacctctcaaagtatctattcttgcttggcggcttttgagggaccgcttacctacgaagggaaatttggcaaaccgtgacattattcctatggaggggc 47623236  T
Q  213 ggttgtgtgtcactggttgtggacacgtggaagatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggct 312  Q
    |||||||| |  |||||||||| || |  ||||||||||||||||||||| ||||||||||| ||||| ||| ||||||| | ||||||||||  |||||    
T  47623237 ggttgtgttt--ctggttgtgggcatgatgaagatgtgaatcacttgtttctgtcttgcccattttttggtgccttatggtctttggtgagggagtggct 47623334  T
Q  313 tggggttgaagggcttgatccttagcatatttcggaccattttttgcaatttattca 369  Q
     |||||||||||   |||| || ||  |||  |||||||||||||||||||||||||    
T  47623335 gggggttgaaggcgctgattctcagtttatggcggaccattttttgcaatttattca 47623391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 242 - 325
Target Start/End: Complemental strand, 43388318 - 43388235
Alignment:
Q  242 gaagatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggcttggggttgaaggg 325  Q
    |||||||||||||| || ||||||||||| ||||||||| |||  || ||||| |||||| ||||||||||||| || ||||||    
T  43388318 gaagatgtgaatcatttatttttgtcttgtccaatttttggtgcattgtggcctttggtgcgggcttggcttggtgtcgaaggg 43388235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 44 - 222
Target Start/End: Complemental strand, 51052629 - 51052451
Alignment:
Q  44 tatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggc 143  Q
    ||||||||||| |||| |||||| || ||  ||||||| |  |||||||| ||||| ||||||||||| | |||||| ||| | ||||| |||| |||||    
T  51052629 tatgacatgctgacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggc 51052530  T
Q  144 ggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgt 222  Q
    | | | |||| ||||| |||||||| ||| | |||| |||||| ||||| ||  | ||| |||||| |||||| |||||    
T  51052529 gacttctgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgt 51052451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 279
Target Start/End: Original strand, 37191237 - 37191436
Alignment:
Q  80 catctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggcggcatttgagagatcgtttacctacgaaagtaaatt 179  Q
    |||| ||||||||||||||| ||||||||||  | || | | ||| | | ||| |||| ||||||||  ||||||||||| |||||||| |||   || |    
T  37191237 catcaaaatatggagttaatctggcataaactggttcatttaaaagtttatatccttgcttggcggctgttgagagatcgattacctactaaatccaact 37191336  T
Q  180 cggcaaaccgtggtatcatttctttggaggtgcggttgtgtgtcactggttgtggacacgtggaagatgtgaatcacttgtttttgtcttgcccaatttt 279  Q
     |||| | ||||| || |  ||| ||||||  || || |||||||| || ||||| || || ||||||||||||||  ||||||||||||| ||||||||    
T  37191337 tggcagatcgtggcattacatctgtggaggatcgattttgtgtcacgggatgtgggcatgttgaagatgtgaatcatatgtttttgtcttgtccaatttt 37191436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 192
Target Start/End: Original strand, 11909096 - 11909244
Alignment:
Q  44 tatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggc 143  Q
    ||||||||||| |||| |||||| || ||  ||||||| |  |||||||| ||||| ||||||||||| | |||||| ||| | |||||  ||| |||||    
T  11909096 tatgacatgctgacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctatcattgcttggc 11909195  T
Q  144 ggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtgg 192  Q
    | | | |||| ||||| |||||||| ||| | |||| |||||| |||||    
T  11909196 gacttctgagggatcggttacctacaaaacttaatttggcaaatcgtgg 11909244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 168
Target Start/End: Original strand, 16917836 - 16917924
Alignment:
Q  80 catctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggcggcatttgagagatcgtttacctac 168  Q
    |||| ||||||||||||||| ||||||||||| | |||| | ||| | ||||| |||| |||||| |  ||||| ||||| ||||||||    
T  16917836 catcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgcttacctac 16917924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 172
Target Start/End: Complemental strand, 43388480 - 43388388
Alignment:
Q  80 catctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggcggcatttgagagatcgtttacctacgaaa 172  Q
    |||| ||||||||||||||| ||||||||||| | |||| | ||| | ||||| |||| ||||||    ||||| |||||||||||||| |||    
T  43388480 catcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgattgttgagggatcgtttacctactaaa 43388388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 44 - 312
Target Start/End: Complemental strand, 42928280 - 42928012
Alignment:
Q  44 tatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggc 143  Q
    ||||||||||| ||||  |||||||| ||  ||||||||| ||||||||||||||| ||| ||||||| | |||||| ||| ||||||| ||||||||||    
T  42928280 tatgacatgctgacatcgcaggaacagccccagttacatccaaatatggagttaatttggtataaacaggttcctctcaaagtctctatccttgtttggc 42928181  T
Q  144 ggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgtcactggttgtggacacgtgga 243  Q
    ||| | |||| ||||| ||| |||| |||   |||| | ||||| |||| ||  |  | ||||||||||||||||||||| |||| || ||  |||| ||    
T  42928180 ggcttctgagggatcggttaactacaaaaaataatttgacaaactgtggcattttacccttggaggtgcggttgtgtgtctctggatgcgggaacgttga 42928081  T
Q  244 agatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggct 312  Q
    |||||| ||||| ||||| ||||| || |||| |||||||| |||||| ||||||||| |||| |||||    
T  42928080 agatgtcaatcatttgttcttgtcatgtccaacttttagtgccttatgaccattggtgcgggcatggct 42928012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 44 - 315
Target Start/End: Original strand, 28535666 - 28535937
Alignment:
Q  44 tatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggc 143  Q
    ||||||||||| |||| |||||| || ||| ||||||||| ||| ||||||||||| ||||||| ||| | |||||| ||| | ||||| |||| |||||    
T  28535666 tatgacatgctgacatcacaggagcagcctcagttacatcaaaacatggagttaatttggcatacacaggttcctctcaaagtttctatccttgcttggc 28535765  T
Q  144 ggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgtcactggttgtggacacgtgga 243  Q
    | | | |||| ||||| |||||||| |||   |||| |||||||||||| ||  |  ||||||||| || | |||||||  ||||||||||  | || ||    
T  28535766 gacttctgagggatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagatgtgtgtttctggttgtgggaatgtaga 28535865  T
Q  244 agatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggcttgg 315  Q
    ||||||  |||| ||||||||||||||  ||| |||||||| |||||||||| ||||| |||| ||||||||    
T  28535866 agatgtcgatcatttgtttttgtcttgtgcaacttttagtgccttatggccaatggtgcgggcatggcttgg 28535937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 44 - 301
Target Start/End: Complemental strand, 23238533 - 23238276
Alignment:
Q  44 tatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggc 143  Q
    ||||| |||||||||| |||||| || ||  ||||||| |  |||||||||||||| ||||||||| | | |||||| ||| | ||||| |||| ||||     
T  23238533 tatgatatgctaacatcacaggagcaaccccagttacaccataatatggagttaatttggcataaataggttcctctcaaagtttctatccttgcttgga 23238434  T
Q  144 ggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgtcactggttgtggacacgtgga 243  Q
    | | |||||||||||| ||||||||||||   |||| |||||||||||| ||  |  ||||||||| ||||||||||||  |||| |||||  |||| ||    
T  23238433 gacttttgagagatcggttacctacgaaaagtaatttggcaaaccgtggcattttagctttggaggcgcggttgtgtgtttctggatgtgggaacgttga 23238334  T
Q  244 agatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtg 301  Q
    |||||| ||||| ||||||||||||||   || ||||||||  ||||||||| |||||    
T  23238333 agatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatggccaatggtg 23238276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 81 - 418
Target Start/End: Original strand, 19255150 - 19255488
Alignment:
Q  81 atctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggcggcatttgagagatcgtttacctacgaaagtaaattc 180  Q
    ||||||||||||||||||| |||||||||||   | |||| ||| | ||||| |||| |||||||  | |||| ||||| |||||||| |||   ||||     
T  19255150 atctaaatatggagttaatttggcataaacagatttctctcaaagtatctatccttgcttggcggtttctgagggatcggttacctacaaaaaataattt 19255249  T
Q  181 ggcaaaccgtggtatcatttctttggag-gtgcggttgtgtgtcactggttgtggacacgtggaagatgtgaatcacttgtttttgtcttgcccaatttt 279  Q
    ||||||  |||| || ||| | |||||| | |||||||||||||||||| || || ||||| |||||||| ||||| ||||| |||||||| |||| |||    
T  19255250 ggcaaattgtggcattattcccttggagcgcgcggttgtgtgtcactggatgcgggcacgttgaagatgtcaatcatttgttcttgtcttgtccaacttt 19255349  T
Q  280 tagtgtcttatggccattggtgagggcttggcttggggttgaagggcttgatccttagcatatttcggaccattttttgcaatttattcattacgcatgt 379  Q
    | ||| ||||||| |||||||| |||| ||||| || || | |||| | ||| || |    | ||| || |||||||||||||||||| |||||||| ||    
T  19255350 tggtgccttatggacattggtgcgggcatggctcggagtggtaggggtcgattctcaaacaacttcagatcattttttgcaatttattaattacgcaggt 19255449  T
Q  380 tgcttgaaattgcgaagatcttatttccatttcatttgg 418  Q
    || | || ||||||| |||| | |||||| || ||||||    
T  19255450 tgttcgagattgcgacgatcatttttccacttgatttgg 19255488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 86 - 301
Target Start/End: Complemental strand, 8228133 - 8227918
Alignment:
Q  86 aatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggcggcatttgagagatcgtttacctacgaaagtaaattcggcaa 185  Q
    |||||||||||||| || |||||||| | |||||| ||| | ||||| |||| |||| | | |||||||||||| ||||||||||||   |||| |||||    
T  8228133 aatatggagttaatttgacataaacaggttcctctcaaagtatctatccttgcttggagacttttgagagatcggttacctacgaaaagtaatttggcaa 8228034  T
Q  186 accgtggtatcatttctttggaggtgcggttgtgtgtcactggttgtggacacgtggaagatgtgaatcacttgtttttgtcttgcccaatttttagtgt 285  Q
    ||||||  ||  |  ||||||||| ||||||||||||  |||| ||||   |||| |||||||| ||||| ||||||||||||||   || ||||||||     
T  8228033 accgtgacattttacctttggaggcgcggttgtgtgtttctggatgtgagaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgc 8227934  T
Q  286 cttatggccattggtg 301  Q
     ||||||||| |||||    
T  8227933 attatggccaatggtg 8227918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 44 - 315
Target Start/End: Original strand, 35983782 - 35984053
Alignment:
Q  44 tatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggc 143  Q
    ||||||||||| |||| |||||| || ||| ||||||||| ||| ||||||||||| |||| || ||| | |||||| ||| | ||||| |||| |||||    
T  35983782 tatgacatgctgacatcacaggagcagcctcagttacatcaaaacatggagttaatttggcttacacaggttcctctcaaagtatctatccttgcttggc 35983881  T
Q  144 ggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgtcactggttgtggacacgtgga 243  Q
    | | | ||||  |||| |||||||| |||   |||| |||||||| ||  ||  |  ||||||||| ||||||||||||   |||||||||  | || ||    
T  35983882 gacttctgaggaatcggttacctacaaaaaataatttggcaaaccatgacattttacctttggaggcgcggttgtgtgtttttggttgtgggaatgtaga 35983981  T
Q  244 agatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggcttgg 315  Q
    || ||| ||||| ||||||||||||||  ||| |||||||| |||||||||| ||||| |||| || |||||    
T  35983982 agttgtcaatcatttgtttttgtcttgtgcaacttttagtgccttatggccaatggtgcgggcatgacttgg 35984053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 315
Target Start/End: Original strand, 33385353 - 33385636
Alignment:
Q  34 gttcgtggtgtat--gacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaa-tctct 130  Q
    |||||||||||||  ||| || | |||| ||||||||| ||| |  | |||| ||||||||||||||| ||||||||||| | ||| ||||||| | |||    
T  33385353 gttcgtggtgtatatgacttgttgacatcacaggaacaacctcatattcatcaaaatatggagttaatttggcataaacaggttcc-cttaaaagtttct 33385451  T
Q  131 atgcttgtttggcggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgtcactggtt 230  Q
    || |||| |||||| |  ||||| |||||||||||||| |||  ||||| ||     ||||| || || ||| ||||    ||||| |||||  | || |    
T  33385452 atccttgcttggcgactgttgagggatcgtttacctactaaatcaaatttggtggcacgtggaattatatctgtggaaaatcggttttgtgtatcgggat 33385551  T
Q  231 gtggacacgtggaagatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggcttgg 315  Q
    |||| || || |||||||||||||| || ||||||||||| ||||||||| |||  || ||||| |||||| |||||||||||||    
T  33385552 gtgggcaggttgaagatgtgaatcatttatttttgtcttgtccaatttttggtgcattgtggcctttggtgtgggcttggcttgg 33385636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 435
Target Start/End: Original strand, 18359071 - 18359472
Alignment:
Q  34 gttcgtggtgtat--gacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctcta 131  Q
    |||||||||||||  |||||| | |||| ||||||||| ||| |  | |||| ||||||||||||||| | ||||||||| | |||| | ||| | || |    
T  18359071 gttcgtggtgtatatgacatgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatctagcataaacaggttcctttaaaagtttcaa 18359170  T
Q  132 tgcttgtttggcggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgtcactggttg 231  Q
    | |||| |||||||   ||||| |||||||||||||| |||   || | |||| | ||||  || || | | ||||||  ||||| |||||||| || |     
T  18359171 tccttgcttggcggttgttgagggatcgtttacctactaaatccaacttggcagatcgtgc-attatatatgtggaggatcggttttgtgtcacgggatc 18359269  T
Q  232 tggacacgtggaagatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggcttggggttgaagggcttgat 331  Q
    ||| || || ||||||||||||||  ||||||||||||| || |||||  |||  || |||||  ||| | |||| |||||||| || |||||| | |||    
T  18359270 tgggcatgttgaagatgtgaatcatatgtttttgtcttgtccgattttcggtgcattgtggcctatggggcgggcatggcttggtgtcgaaggg-tagat 18359368  T
Q  332 ccttagcatatttcggaccattttttgcaatttattcattacgcatgttgcttgaaattgcgaagatcttatttccatttcatttggcttcagtgtgttt 431  Q
     || |   ||| || || |||||| ||||||||||| | |||||| || |||||||||  ||  ||||||  || ||||| |||||||||||||||||||    
T  18359369 tctcatgctatctcagatcattttgtgcaatttattaaatacgcaggtggcttgaaatctcgtcgatctttctttcatttgatttggcttcagtgtgttt 18359468  T
Q  432 gggt 435  Q
    ||||    
T  18359469 gggt 18359472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 44 - 222
Target Start/End: Complemental strand, 12825348 - 12825170
Alignment:
Q  44 tatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggc 143  Q
    ||||||||||| |||| |||||| || ||  ||||||| |  |||||||| ||||| ||||||||||||| |||||| ||| | | ||| |||| |||||    
T  12825348 tatgacatgctgacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaagttcctctcaaagtatgtatccttgcttggc 12825249  T
Q  144 ggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgt 222  Q
    | | | |||| ||||| |||||||| ||| | |||| |||||| ||||| ||  | ||| |||||| |||||| |||||    
T  12825248 gacttctgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgt 12825170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 222
Target Start/End: Original strand, 30732305 - 30732483
Alignment:
Q  44 tatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggc 143  Q
    ||||||||||| |||| |||||| || ||  ||||||| |  |||||||| ||||| ||||||||||| | |||||| ||| | |||||  ||| |||||    
T  30732305 tatgacatgctgacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctatctttgcttggc 30732404  T
Q  144 ggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgt 222  Q
    | | | |||| ||||| |||||||| ||| | |||| |||||| ||||| ||  | ||| |||||| |||||| |||||    
T  30732405 gacttctgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgt 30732483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 168
Target Start/End: Original strand, 8300161 - 8300297
Alignment:
Q  34 gttcgtggtg--tatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctcta 131  Q
    ||||||||||  |||||| || | |||| ||||||||| ||| |  | |||| ||||||||||||||| ||||||||||| | |||| | ||| | ||||    
T  8300161 gttcgtggtgcatatgacctgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttcta 8300260  T
Q  132 tgcttgtttggcggcatttgagagatcgtttacctac 168  Q
    | ||||||||||| |  ||||| ||||| ||||||||    
T  8300261 tccttgtttggcgactgttgagggatcgcttacctac 8300297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 325
Target Start/End: Complemental strand, 27767203 - 27766911
Alignment:
Q  34 gttcgtggtgtat--gacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctcta 131  Q
    |||||||||||||  ||| || | |||| ||||||||| ||| |  | |||| ||||||||||||||| ||||||||||| | |||| | ||| | | ||    
T  27767203 gttcgtggtgtatatgacttgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttata 27767104  T
Q  132 tgcttgtttggcggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgtcactggttg 231  Q
    | |||| |||||| |  ||||| |||||||||||||| |||  ||||| ||   | ||||| || || | | ||||    ||||| ||||| || || ||    
T  27767103 tccttgcttggcgactgttgagggatcgtttacctacaaaatcaaatttggtggaacgtgggattatatatgtggaaaatcggttttgtgtaacgggatg 27767004  T
Q  232 tggacacgtggaagatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggcttggggttgaaggg 325  Q
     || || || |||||||||||||| || ||||||||||| ||||||||| |||  || ||||| || |||  |||||||||||| || ||||||    
T  27767003 cgggcaggttgaagatgtgaatcatttatttttgtcttgtccaatttttggtgctttgtggcc-tttgtgcaggcttggcttggtgtcgaaggg 27766911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 325
Target Start/End: Original strand, 8300341 - 8300454
Alignment:
Q  212 cggttgtgtgtcactggttgtggacacgtggaagatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggc 311  Q
    ||||| ||||| || || ||||| || || |||||||||||||| || ||||||||||| || | |||| ||| ||| |||||  || || |||||||||    
T  8300341 cggttttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgccttgtggcctctgatgcgggcttggc 8300440  T
Q  312 ttggggttgaaggg 325  Q
    |||| || ||||||    
T  8300441 ttggtgtcgaaggg 8300454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 168
Target Start/End: Original strand, 25857451 - 25857539
Alignment:
Q  80 catctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggcggcatttgagagatcgtttacctac 168  Q
    |||| ||||||||||||||| ||||||||||| | |||| | ||| | ||||| |||| |||||| |  ||||| ||||| ||||||||    
T  25857451 catcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgcttacctac 25857539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 270
Target Start/End: Original strand, 27117194 - 27117378
Alignment:
Q  86 aatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggcggcatttgagagatcgtttacctacgaaagtaaattcggcaa 185  Q
    |||||||| ||||| ||||||||||| | |||||| ||| | ||||| |||| |||||| | | |||| || || ||||| || ||| | |||| || ||    
T  27117194 aatatggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggaccggttacccacaaaacttaatttggtaa 27117293  T
Q  186 accgtggtatcatttctttggaggtgcggttgtgtgtcactggttgtggacacgtggaagatgtgaatcacttgtttttgtcttg 270  Q
    ||||||| ||  | ||| |||||| |||||| |||||  |||| |||||  | || ||||||||   ||| ||||||||||||||    
T  27117294 accgtggcattctatctatggaggagcggttatgtgtttctggctgtgggaatgtcgaagatgtttctcatttgtttttgtcttg 27117378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 120
Target Start/End: Complemental strand, 31641660 - 31641584
Alignment:
Q  44 tatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctct 120  Q
    ||||||||||| |||| |||||| || ||| | ||||||| ||| ||||||||||| ||||||| ||| | ||||||    
T  31641660 tatgacatgctgacatcacaggagcagcctcacttacatcaaaacatggagttaatttggcatacacaggttcctct 31641584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 44 - 301
Target Start/End: Complemental strand, 3401 - 3144
Alignment:
Q  44 tatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggc 143  Q
    ||||| ||||| |||| |||||| || || |||||||| |  |||||||||||||| ||||||||||| | |||||||||| | ||||| |||| ||||     
T  3401 tatgatatgctgacatcacaggagcaaccctagttacaccataatatggagttaatttggcataaacaggttcctcttaaagtttctatccttgcttgga 3302  T
Q  144 ggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgtcactggttgtggacacgtgga 243  Q
    | | |||||||||||| ||||||||||||   |||| |||||||| ||| ||  |  ||||||||| ||||||||||||  |||| |||||  |||| ||    
T  3301 gacttttgagagatcggttacctacgaaaagcaatttggcaaaccatggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttga 3202  T
Q  244 agatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtg 301  Q
    |||||| ||||| ||||||||||||||   || ||||||||  ||||||||| |||||    
T  3201 agatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatggccaatggtg 3144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 44 - 312
Target Start/End: Original strand, 235428 - 235698
Alignment:
Q  44 tatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggc 143  Q
    ||||||||| | |||| |||||| || ||  ||||||||| ||||||||||||||| ||||||||||| | || ||| ||| ||||||| |||| |||||    
T  235428 tatgacatgttgacatcacaggagcagccccagttacatcaaaatatggagttaatttggcataaacaggttcatctcaaagtctctatccttgcttggc 235527  T
Q  144 ggcatttgagagatcgtttacctacgaaagtaa--attcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgtcactggttgtggacacgtg 241  Q
    | | | |||| ||||| |||||||| |||  ||  ||| |||||||||||| ||  |  ||||||||| ||||||||||||  ||||||| |   ||||     
T  235528 gacttctgagggatcggttacctacaaaaaaaatcatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggttgcgagaacgtt 235627  T
Q  242 gaagatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggct 312  Q
    |||||||| ||||| ||||||||||||||  ||| |||||||| |||||||||| ||||| |||| |||||    
T  235628 gaagatgttaatcatttgtttttgtcttgttcaacttttagtgccttatggccaatggtgcgggcatggct 235698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 44 - 301
Target Start/End: Original strand, 11277243 - 11277500
Alignment:
Q  44 tatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggc 143  Q
    ||||| ||||| |||| |||||| || ||  ||||||| |  |||||||||||||| ||||||||||| | |||||| ||| | ||||| |||| |||||    
T  11277243 tatgatatgctgacatcacaggagcaaccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggc 11277342  T
Q  144 ggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgtcactggttgtggacacgtgga 243  Q
    | | |||||||||||| ||||||||||||   |||| |||||||||||| ||  |  ||||||||| ||||||||||||  |||| |||||  |||| ||    
T  11277343 gacttttgagagatcggttacctacgaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttga 11277442  T
Q  244 agatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtg 301  Q
    |||||| ||||| ||||||| ||||||   || ||||||||  ||||||||| |||||    
T  11277443 agatgttaatcatttgttttagtcttgtgtaaattttagtgcattatggccaatggtg 11277500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 44 - 284
Target Start/End: Complemental strand, 47877132 - 47876892
Alignment:
Q  44 tatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggc 143  Q
    ||||||||||| |||| |||||| || ||  ||||||||| ||||| ||||||||| ||||||||||| | |||||| ||| | ||||| |||| |||||    
T  47877132 tatgacatgctgacatcacaggagcagccccagttacatcaaaatagggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggc 47877033  T
Q  144 ggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgtcactggttgtggacacgtgga 243  Q
    | | | |||||||||  |||||||| |||   |||| |||||||||||| ||  |  ||||||||| ||||||||||||  |||| || ||  |||| ||    
T  47877032 gacttctgagagatcagttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgcgggaacgttga 47876933  T
Q  244 agatgtgaatcacttgtttttgtcttgcccaatttttagtg 284  Q
    |||||| ||||| ||||||||||||||  ||| ||||||||    
T  47876932 agatgttaatcatttgtttttgtcttgttcaacttttagtg 47876892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 25 - 301
Target Start/End: Complemental strand, 17720805 - 17720527
Alignment:
Q  25 gggtattcagttcgtggtg--tatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctctta 122  Q
    |||||||| |||||||| |  ||||||||||| |||| |||||| || ||| | ||||||| |||  |||||||||| ||||||| ||| | |||||| |    
T  17720805 gggtattccgttcgtggagcctatgacatgctgacatcacaggagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttcctctca 17720706  T
Q  123 aaatctctatgcttgtttggcggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgt 222  Q
    || | ||||| ||||  ||||| | | |||| ||||| |||||||| ||||  |||| |||||||||||| ||  |  || |||||| |||| |||||||    
T  17720705 aagtttctatccttgcatggcgacttctgagggatcggttacctacaaaagataatttggcaaaccgtggcattttacctctggaggcgcggatgtgtgt 17720606  T
Q  223 cactggttgtggacacgtggaagatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtg 301  Q
      || |||||||  | |  |||||||| ||||| ||||||||||||||  ||| |||||||| ||||||||||||||||    
T  17720605 ttctagttgtgggaatgaagaagatgttaatcatttgtttttgtcttgtgcaacttttagtgccttatggccattggtg 17720527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 88 - 301
Target Start/End: Complemental strand, 29968080 - 29967867
Alignment:
Q  88 tatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggcggcatttgagagatcgtttacctacgaaagtaaattcggcaaac 187  Q
    |||||||||||| ||||||||||| | |||||| ||| | ||||| |||| |||  | | |||||||||||| ||||||||||||   |||| |||||||    
T  29968080 tatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttgaggacttttgagagatcggttacctacgaaaagtaatttggcaaac 29967981  T
Q  188 cgtggtatcatttctttggaggtgcggttgtgtgtcactggttgtggacacgtggaagatgtgaatcacttgtttttgtcttgcccaatttttagtgtct 287  Q
    | ||| ||  |  ||||||||| ||||||||||||  |||| |||||  |||| |||||||| ||||| ||||||||||||||   || ||||||||  |    
T  29967980 catggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgctt 29967881  T
Q  288 tatggccattggtg 301  Q
    |||||||| |||||    
T  29967880 tatggccaatggtg 29967867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 44 - 312
Target Start/End: Complemental strand, 37919693 - 37919425
Alignment:
Q  44 tatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggc 143  Q
    ||||||||||| |||| |||||| || ||  | |||||||   ||||| ||||||| ||| ||||||| | |||||| ||| | ||||| |||| |||||    
T  37919693 tatgacatgctgacatcacaggagcagccccaattacatcatcatatgaagttaatttggtataaacaggttcctctcaaagtatctatccttgcttggc 37919594  T
Q  144 ggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgtcactggttgtggacacgtgga 243  Q
    | |   |||||||| | |||||||| |||   |||| |||||||||| | ||  |  ||||||||| ||||||||||||  || |||||||  |||| ||    
T  37919593 gactcctgagagattggttacctacaaaaaataatttggcaaaccgttgcattttacctttggaggcgcggttgtgtgtttctagttgtgggaacgttga 37919494  T
Q  244 agatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggct 312  Q
    |||||| ||||| || |||||||||||   || ||||||||  ||||||||| ||||| |||| |||||    
T  37919493 agatgttaatcatttatttttgtcttgtgtaacttttagtgcattatggccaatggtgcgggcatggct 37919425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 435
Target Start/End: Complemental strand, 37254919 - 37254516
Alignment:
Q  34 gttcgtggtgtat--gacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctcta 131  Q
    |||||||||||||  |||||| | |||| || |||||| ||| |  | |||| ||||||||||||||| ||||||||||| | | || | ||| | || |    
T  37254919 gttcgtggtgtatacgacatgttgacatcacgggaacaacctcatgttcatcaaaatatggagttaatctggcataaacaggttactttaaaagtttcaa 37254820  T
Q  132 tgcttgtttggcggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgtcactggttg 231  Q
    | |||| |||||||   ||||| |||||||||||||| |||   || | |||| |  |||| || || ||| |||||   ||||| |||||||| |  ||    
T  37254819 tccttgcttggcggttgttgagggatcgtttacctactaaatccaacttggcagattgtggcattatatctgtggagactcggttttgtgtcacggaatg 37254720  T
Q  232 tggacacgtggaagatgtgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggcttggggttgaagggcttgat 331  Q
    ||||||  | ||||||||||||||  ||||||||||||| ||||||||  |||  || |||||  ||||| |||| |||||||| || |||||| |  ||    
T  37254719 tggacattttgaagatgtgaatcatatgtttttgtcttgtccaattttcggtgcattgtggcctatggtgcgggcatggcttggtgtcgaaggggtaaat 37254620  T
Q  332 ccttagcatatttcggaccattttttgcaatttattcattacgcatgttgcttgaaattgcgaagatcttatttccatttcatttggcttcagtgtgttt 431  Q
     || |   ||| || || |||||| ||||||||||| | || ||| || ||||| |||  ||  ||||||  || ||||| |||||||||||||||||||    
T  37254619 tctcatgctatctcagatcattttgtgcaatttattgaatatgcaggtggcttggaatcccgtcgatctttatttcattttatttggcttcagtgtgttt 37254520  T
Q  432 gggt 435  Q
    ||||    
T  37254519 gggt 37254516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 431
Target Start/End: Complemental strand, 18530454 - 18530272
Alignment:
Q  249 tgaatcacttgtttttgtcttgcccaatttttagtgtcttatggccattggtgagggcttggcttggggttgaagggcttgatccttagcatatttcgga 348  Q
    ||||||| |||||||||||||| ||||||||| |||  || |||||  ||||| ||||||||||||| || |||||| | ||| || |   ||| || ||    
T  18530454 tgaatcatttgtttttgtcttgtccaatttttggtgcattgtggcctatggtgcgggcttggcttggtgtcgaaggggtagattctcatgctatatcaga 18530355  T
Q  349 ccattttttgcaatttattcattacgcatgttgcttgaaattgcgaagat-cttatttccatttcatttggcttcagtgtgttt 431  Q
     |||||| ||||||||||| | || ||| || ||||||||| |||  ||| ||||||| ||||| ||||| |||||||||||||    
T  18530354 tcattttgtgcaatttattgaatatgcaggtggcttgaaatcgcgttgatccttattt-catttgatttgacttcagtgtgttt 18530272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 435
Target Start/End: Complemental strand, 25619572 - 25619217
Alignment:
Q  80 catctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggcggcatttgagagatcgtttacctacgaaagtaaatt 179  Q
    |||| ||||||||||||||||||||||||||| | |||| | ||| | ||||| |||| |||||||   ||||| || || |||||||| |||   || |    
T  25619572 catcaaaatatggagttaatatggcataaacaggttcctttaaaagtttctatccttgcttggcggttgttgagggaacgattacctactaaatccaact 25619473  T
Q  180 cggcaaaccgtggtatcatttctttggaggtgcggttgtgtgtcactggttgtggacacgtggaagatgtgaatcacttgtttttgtcttgcccaatttt 279  Q
     |||| | ||||| ||    ||| ||||||  || || |||||||| || ||||| || || ||||||||||||||  ||||||||||||| ||||||||    
T  25619472 tggcagatcgtggcattgcatctgtggaggaccgattttgtgtcacaggatgtgggcatgttgaagatgtgaatcatatgtttttgtcttgtccaatttt 25619373  T
Q  280 tagtgtcttatggccattggtgagggcttggcttggggttgaagggcttgatccttagcatatttcggaccattttttgcaatttattcattacgcatgt 379  Q
      |||  || |||||   |||| |||  |||||||| ||||||||  | ||| || |   ||| || || |||||| ||||||||||  | || ||| ||    
T  25619372 cggtgcattgtggcctaaggtgcgggaatggcttggtgttgaaggtgtagattctcatgctatctcagatcattttgtgcaatttatcgaatatgcaggt 25619273  T
Q  380 tgcttgaaattgcgaagatcttatttccatttcatttggcttcagtgtgtttgggt 435  Q
     |||||||||  ||  ||||||  || ||||| |||||||||||||||||||||||    
T  25619272 ggcttgaaatcccgtcgatctttatttcatttgatttggcttcagtgtgtttgggt 25619217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 270
Target Start/End: Original strand, 4938119 - 4938345
Alignment:
Q  44 tatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggc 143  Q
    ||||||||||| |||| |||||| || ||  ||||||| |  ||| |||| ||||| ||||||||||| |  ||||| ||| ||||||| |||| |||||    
T  4938119 tatgacatgctgacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggc 4938218  T
Q  144 ggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgtcactggttgtggacacgtgga 243  Q
    | |   |||| ||||| |||||||| ||| | |||| |||||| ||||| ||  | ||| |||||| |||||| || ||  |||| |||||    || ||    
T  4938219 gactaatgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcga 4938318  T
Q  244 agatgtgaatcacttgtttttgtcttg 270  Q
    |||||| | ||| ||||||||||||||    
T  4938319 agatgttactcatttgtttttgtcttg 4938345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 270
Target Start/End: Original strand, 105834 - 106060
Alignment:
Q  44 tatgacatgctaacattacaggaacatccttagttacatctaaatatggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggc 143  Q
    ||||||||||| |||| |||||| || ||  ||||||| |  ||| |||| ||||| ||||||||||| |  ||||| ||| ||||||| |||| |||||    
T  105834 tatgacatgctgacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggc 105933  T
Q  144 ggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccgtggtatcatttctttggaggtgcggttgtgtgtcactggttgtggacacgtgga 243  Q
    | |   |||| ||||| |||||||| ||| | |||| |||||| ||||| ||  | ||| |||||| |||||| || ||  |||| |||||    || ||    
T  105934 gactaatgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcga 106033  T
Q  244 agatgtgaatcacttgtttttgtcttg 270  Q
    |||||| | ||| ||||||||||||||    
T  106034 agatgttactcatttgtttttgtcttg 106060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 222
Target Start/End: Original strand, 11242 - 11374
Alignment:
Q  90 tggagttaatatggcataaacaagctcctcttaaaatctctatgcttgtttggcggcatttgagagatcgtttacctacgaaagtaaattcggcaaaccg 189  Q
    |||| ||||| ||||||||||| | |||||| ||| | ||||| |||| |||||| | | | || ||||| |||||||| ||| | |||| |||||||||    
T  11242 tggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctcagggatcggttacctacaaaacttaatttggcaaaccg 11341  T
Q  190 tggtatcatttctttggaggtgcggttgtgtgt 222  Q
    ||| ||  | ||| |||||| |||||| |||||    
T  11342 tggcattctatctgtggaggagcggttatgtgt 11374  T

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