View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12779_low_11 (Length: 441)

Name: NF12779_low_11
Description: NF12779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12779_low_11
NF12779_low_11
[»] chr8 (10 HSPs)
chr8 (144-344)||(27541479-27541679)
chr8 (142-318)||(14677967-14678144)
chr8 (142-318)||(5657769-5657946)
chr8 (142-318)||(31100818-31100995)
chr8 (349-426)||(27540167-27540244)
chr8 (167-296)||(5662589-5662719)
chr8 (144-219)||(23738657-23738731)
chr8 (144-219)||(24788079-24788154)
chr8 (141-197)||(33689362-33689418)
chr8 (144-284)||(8158461-8158601)
[»] chr5 (9 HSPs)
chr5 (142-318)||(22009474-22009651)
chr5 (142-318)||(7473435-7473612)
chr5 (144-318)||(9043802-9043977)
chr5 (145-318)||(30442493-30442667)
chr5 (1-145)||(13424808-13424952)
chr5 (150-280)||(22004441-22004571)
chr5 (155-240)||(26840988-26841074)
chr5 (144-222)||(19085420-19085498)
chr5 (143-202)||(30463113-30463173)
[»] chr7 (6 HSPs)
chr7 (144-318)||(1262088-1262263)
chr7 (143-318)||(43071328-43071504)
chr7 (144-318)||(26909927-26910102)
chr7 (144-318)||(48849753-48849928)
chr7 (151-222)||(22007347-22007418)
chr7 (190-222)||(26000064-26000096)
[»] scaffold0035 (1 HSPs)
scaffold0035 (144-318)||(35063-35238)
[»] chr2 (8 HSPs)
chr2 (144-318)||(23348926-23349101)
chr2 (143-318)||(18355259-18355435)
chr2 (155-318)||(12741699-12741863)
chr2 (144-344)||(1615835-1616035)
chr2 (142-304)||(10328851-10329015)
chr2 (145-344)||(24454516-24454716)
chr2 (48-100)||(5428508-5428560)
chr2 (47-100)||(19263637-19263690)
[»] chr3 (13 HSPs)
chr3 (143-318)||(53973232-53973408)
chr3 (144-318)||(31685077-31685252)
chr3 (144-318)||(37982349-37982524)
chr3 (142-318)||(19882057-19882233)
chr3 (144-314)||(17681767-17681938)
chr3 (143-280)||(12538620-12538757)
chr3 (142-286)||(2549935-2550079)
chr3 (143-280)||(24815914-24816052)
chr3 (144-280)||(24761882-24762019)
chr3 (142-280)||(53352745-53352884)
chr3 (143-280)||(53027736-53027874)
chr3 (1-115)||(7298928-7299041)
chr3 (143-172)||(32015784-32015813)
[»] scaffold0045 (1 HSPs)
scaffold0045 (143-318)||(11580-11756)
[»] chr6 (8 HSPs)
chr6 (151-318)||(33045377-33045545)
chr6 (142-272)||(10092510-10092641)
chr6 (144-255)||(3065698-3065809)
chr6 (151-284)||(8976411-8976545)
chr6 (144-222)||(16246702-16246780)
chr6 (142-222)||(30908412-30908493)
chr6 (145-219)||(4660222-4660295)
chr6 (286-318)||(10092641-10092673)
[»] chr4 (4 HSPs)
chr4 (144-318)||(29863307-29863482)
chr4 (144-205)||(12506436-12506497)
chr4 (161-219)||(24260237-24260294)
chr4 (65-115)||(28146863-28146913)
[»] scaffold0596 (1 HSPs)
scaffold0596 (142-318)||(652-829)
[»] scaffold0096 (1 HSPs)
scaffold0096 (144-296)||(27410-27563)
[»] chr1 (2 HSPs)
chr1 (142-222)||(50990905-50990985)
chr1 (144-172)||(25223219-25223247)
[»] scaffold0157 (1 HSPs)
scaffold0157 (144-205)||(13980-14041)
[»] scaffold0475 (1 HSPs)
scaffold0475 (153-219)||(7520-7585)


Alignment Details
Target: chr8 (Bit Score: 177; Significance: 3e-95; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 144 - 344
Target Start/End: Complemental strand, 27541679 - 27541479
Alignment:
Q  144 atcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaacaagggaggccgttggatctcat 243  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  27541679 atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggctttggctccaaacaagggacgccgttggatctcat 27541580  T
Q  244 catttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatgtaccaaattcccatatagcttatag 343  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  27541579 catttggctaagcatgcatctcatcctttgatctaatctgaatcaaactttcaaatttgatgtatatttcctatgcaccaaattcccatatagcttatag 27541480  T
Q  344 t 344  Q
    |    
T  27541479 t 27541479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 142 - 318
Target Start/End: Complemental strand, 14678144 - 14677967
Alignment:
Q  142 atatcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaa-caagggaggccgttggatct 240  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  14678144 atatcatacttatatctaatctttgttaacattgctaatgactttgaaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatct 14678045  T
Q  241 catcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14678044 catcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttaatgtatatttcctatg 14677967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 142 - 318
Target Start/End: Original strand, 5657769 - 5657946
Alignment:
Q  142 atatcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaa-caagggaggccgttggatct 240  Q
    |||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  5657769 atatcatacttatatctaatctttgttaacgttgctaatgactttgcaaaccctaaacctaaatagttttggctccaaaacaagggaggccgttggatct 5657868  T
Q  241 catcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatg 318  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5657869 catcatttggttaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatg 5657946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 142 - 318
Target Start/End: Complemental strand, 31100995 - 31100818
Alignment:
Q  142 atatcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaa-caagggaggccgttggatct 240  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||    
T  31100995 atatcatacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaatggttttggctccaaaacaagggaggccgttcgatct 31100896  T
Q  241 catcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatg 318  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31100895 catcatttggttaagcatgtatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatg 31100818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 349 - 426
Target Start/End: Complemental strand, 27540244 - 27540167
Alignment:
Q  349 ttgaagatattgtggtagaacatttctctcaaatctgaagcattatgaatgctatggcattattttgactgtcacagt 426  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27540244 ttgaagatattgtggtagaacatttttctcaaatctgaagcattatgaatgctatggcattattttgactgtcacagt 27540167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 167 - 296
Target Start/End: Original strand, 5662589 - 5662719
Alignment:
Q  167 ttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaacaagggaggccgttggatctcatcatttggctaagcatgcatctca 266  Q
    |||| ||||| ||||| ||||||||||||||||||| ||  ||| ||| |||| |||||  | ||||| |||||||||||||||||| |||| |||||||    
T  5662589 ttaatattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctcatcatttggctaggcattcatctca 5662688  T
Q  267 tcctttgatctaatctga-gtcaaactttca 296  Q
    ||||||||| ||||||||  |||||||||||    
T  5662689 tcctttgatttaatctgacttcaaactttca 5662719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 144 - 219
Target Start/End: Original strand, 23738657 - 23738731
Alignment:
Q  144 atcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaa 219  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||| | ||||||||||||    
T  23738657 atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaccctaaa-gtttttggctccaa 23738731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 144 - 219
Target Start/End: Complemental strand, 24788154 - 24788079
Alignment:
Q  144 atcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaa 219  Q
    |||||||||||||||||||||  |||||||||| ||||| |||||||||||||||||||| | |||||||| ||||    
T  24788154 atcatacttatatctaatcttaattaacattgctaatgactttgcaaaccctaaacctaattagttttggcgccaa 24788079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 33689418 - 33689362
Alignment:
Q  141 gatatcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaa 197  Q
    |||||||||| ||||||||||||||||||||||||| ||||| |||||| |||||||    
T  33689418 gatatcatacctatatctaatctttgttaacattgctaatgactttgcagaccctaa 33689362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 144 - 284
Target Start/End: Original strand, 8158461 - 8158601
Alignment:
Q  144 atcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaacaagggaggccgttggatctcat 243  Q
    |||||||||||||||||| |||||||||| ||| ||| |  ||||||| ||||||||||| |  ||| ||| ||||  |||   ||||||| ||||  ||    
T  8158461 atcatacttatatctaatttttgttaacaatgctaattaccttgcaaaacctaaacctaagtattttgggcgccaattaagcagggccgtttgatcaaat 8158560  T
Q  244 catttggctaagcatgcatctcatcctttgatctaatctga 284  Q
     |  | ||||| ||| |||||||||||||||||||||||||    
T  8158561 gagctagctaatcattcatctcatcctttgatctaatctga 8158601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 162; Significance: 3e-86; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 142 - 318
Target Start/End: Complemental strand, 22009651 - 22009474
Alignment:
Q  142 atatcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaa-caagggaggccgttggatct 240  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22009651 atatcatacttatatctaatctttgttaacattgctaatgaatttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatct 22009552  T
Q  241 catcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22009551 catcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatg 22009474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 142 - 318
Target Start/End: Complemental strand, 7473612 - 7473435
Alignment:
Q  142 atatcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaa-caagggaggccgttggatct 240  Q
    ||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7473612 atatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatct 7473513  T
Q  241 catcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatg 318  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7473512 catcatttagctaagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatg 7473435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 144 - 318
Target Start/End: Original strand, 9043802 - 9043977
Alignment:
Q  144 atcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaa-caagggaggccgttggatctca 242  Q
    ||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9043802 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctca 9043901  T
Q  243 tcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatg 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  9043902 tcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaatttttaaatttgatgtatatttcctatg 9043977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 145 - 318
Target Start/End: Complemental strand, 30442667 - 30442493
Alignment:
Q  145 tcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaa-caagggaggccgttggatctcat 243  Q
    |||| ||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30442667 tcatgcttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcat 30442568  T
Q  244 catttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30442567 catttggctaagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatg 30442493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 13424952 - 13424808
Alignment:
Q  1 gttttaaaatatggtccgttaccaagaaaaagaccgcgnnnnnnnggtataggtagccgatgttaccgtttttacagggtgaacaaaattcatgacgaaa 100  Q
    ||||||||||||||||| ||||| ||||||||||||||       ||||||||||||||||||||| |||||||| | ||||||||||||||||||||||    
T  13424952 gttttaaaatatggtccattaccgagaaaaagaccgcgaaaaaaaggtataggtagccgatgttactgtttttacggagtgaacaaaattcatgacgaaa 13424853  T
Q  101 tgtcgttacagctgcaacatgacagtagacatagaatccggatat 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  13424852 tgtcgttacagctgcaacatgacagtagacatagaatccggatat 13424808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 150 - 280
Target Start/End: Complemental strand, 22004571 - 22004441
Alignment:
Q  150 cttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaacaagggaggccgttggatctcatcatttg 249  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||| ||| |||| |||||  | ||||||||||||||||||||    
T  22004571 cttatatctaatctttgttaacattgctaatgattttgcaaaccctaaacctagatagtttaggcgccaatcaaggtggtccgttggatctcatcatttg 22004472  T
Q  250 gctaagcatgcatctcatcctttgatctaat 280  Q
    ||| ||||| ||| |||||||||||||||||    
T  22004471 gctcagcattcatatcatcctttgatctaat 22004441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 155 - 240
Target Start/End: Complemental strand, 26841074 - 26840988
Alignment:
Q  155 atctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctcc-aaacaagggaggccgttggatct 240  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  26841074 atctaatctttgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatct 26840988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 19085498 - 19085420
Alignment:
Q  144 atcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaaca 222  Q
    ||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  19085498 atcatacttatatataatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaca 19085420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 30463173 - 30463113
Alignment:
Q  143 tatcatacttatatctaatctttgttaacattgcaaatgattttgc-aaaccctaaaccta 202  Q
    |||||||||||||||||||||||||||||| ||| ||| |  |||| ||||||||||||||    
T  30463173 tatcatacttatatctaatctttgttaacaatgctaattaccttgcaaaaccctaaaccta 30463113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 156; Significance: 1e-82; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 144 - 318
Target Start/End: Original strand, 1262088 - 1262263
Alignment:
Q  144 atcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaa-caagggaggccgttggatctca 242  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  1262088 atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagggaagccgttggatctca 1262187  T
Q  243 tcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1262188 tcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatg 1262263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 143 - 318
Target Start/End: Complemental strand, 43071504 - 43071328
Alignment:
Q  143 tatcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaa-caagggaggccgttggatctc 241  Q
    |||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  43071504 tatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctc 43071405  T
Q  242 atcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  43071404 atcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatg 43071328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 144 - 318
Target Start/End: Complemental strand, 26910102 - 26909927
Alignment:
Q  144 atcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaa-caagggaggccgttggatctca 242  Q
    ||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||| |||||||||||| |||||||| || |||||||| |    
T  26910102 atcatacttatatctaatctttgttaacattgctaataactttgcaaaccctaaacctaaatggatttggctccaaaacaagggagaccattggatctta 26910003  T
Q  243 tcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26910002 tcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatg 26909927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 144 - 318
Target Start/End: Complemental strand, 48849928 - 48849753
Alignment:
Q  144 atcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaa-caagggaggccgttggatctca 242  Q
    ||||||||||||||||||||||||||||||||| ||||| |||| ||| |||||||||||||||||||||||||||| |||||||    |||||||||||    
T  48849928 atcatacttatatctaatctttgttaacattgctaatgactttgtaaatcctaaacctaaatggttttggctccaaaacaagggattttgttggatctca 48849829  T
Q  243 tcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48849828 tcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatg 48849753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 22007347 - 22007418
Alignment:
Q  151 ttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaaca 222  Q
    ||||||||||| |||||||||||||| ||||| ||| ||||||||||| |||||||||||||||||||||||    
T  22007347 ttatatctaatttttgttaacattgctaatgactttacaaaccctaaatctaaatggttttggctccaaaca 22007418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 26000064 - 26000096
Alignment:
Q  190 aaccctaaacctaaatggttttggctccaaaca 222  Q
    |||||||| ||||||||||||||||||||||||    
T  26000064 aaccctaatcctaaatggttttggctccaaaca 26000096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 144 - 318
Target Start/End: Original strand, 35063 - 35238
Alignment:
Q  144 atcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaa-caagggaggccgttggatctca 242  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||    
T  35063 atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggttgttggatctca 35162  T
Q  243 tcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35163 tcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatg 35238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 144 - 318
Target Start/End: Complemental strand, 23349101 - 23348926
Alignment:
Q  144 atcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaa-caagggaggccgttggatctca 242  Q
    ||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  23349101 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctca 23349002  T
Q  243 tcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatg 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23349001 tcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatg 23348926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 143 - 318
Target Start/End: Complemental strand, 18355435 - 18355259
Alignment:
Q  143 tatcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaa-caagggaggccgttggatctc 241  Q
    |||||||||||||| ||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  18355435 tatcatacttatatttaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggtcgttggatctc 18355336  T
Q  242 atcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatg 318  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  18355335 atcatttggctaagcatgcatctcatcctttaatctaatctgagtcaaattttcaaatttgatgtatatttcctatg 18355259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 155 - 318
Target Start/End: Original strand, 12741699 - 12741863
Alignment:
Q  155 atctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaa-caagggaggccgttggatctcatcatttggcta 253  Q
    |||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  12741699 atctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaaaggaggccgttggatctcatcatttggcta 12741798  T
Q  254 agcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatg 318  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  12741799 agcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatg 12741863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 144 - 344
Target Start/End: Complemental strand, 1616035 - 1615835
Alignment:
Q  144 atcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaacaagggaggccgttggatctcat 243  Q
    ||||| |||||||| |||||||||||||||||  ||||| |||| || |  |||| |||||||||||| ||||||||||||||||  ||||||||| |||    
T  1616035 atcatccttatatccaatctttgttaacattgttaatgactttgtaaccattaaatctaaatggtttttgctccaaacaagggagatcgttggatcgcat 1615936  T
Q  244 catttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatgtaccaaattcccatatagcttatag 343  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||    
T  1615935 catttggctaagcatgcatctcatcctttgatctaatttgagtcaaactttcaaatttgatgtatatttcctatacaccaaattccaatatagcttatag 1615836  T
Q  344 t 344  Q
    |    
T  1615835 t 1615835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 142 - 304
Target Start/End: Complemental strand, 10329015 - 10328851
Alignment:
Q  142 atatcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctc-caaacaagggaggccgttggatct 240  Q
    ||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||| ||||||| ||  |||||||||||||||||||||||    
T  10329015 atatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaattgttttggttctaaaacaagggaggccgttggatct 10328916  T
Q  241 catcatttggctaagcatgcatctcatcc-tttgatctaatctgagtcaaactttcaaatttgat 304  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||  |||||||||    
T  10328915 catcatttggctaagcatgcatctcatccttttgatctaatctgagtcaaatttgaaaatttgat 10328851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 145 - 344
Target Start/End: Original strand, 24454516 - 24454716
Alignment:
Q  145 tcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaacaagggaggccgttggatctcatc 244  Q
    ||||||||||||||||||||  |||||||||| ||     ||||||| |||||||||||||  ||| ||| ||||||||||  |||||||||||||||||    
T  24454516 tcatacttatatctaatcttaattaacattgctaagaccattgcaaatcctaaacctaaattttttaggcgccaaacaaggagggccgttggatctcatc 24454615  T
Q  245 atttggctaagcatgcatctcatcctttgatctaatctga-gtcaaactttcaaatttgatgtatatttcctatgtaccaaattcccatatagcttatag 343  Q
    ||||||||   ||| |||||||||||||||||||||||||  ||||||||||||||||||||| | ||||||||| ||| ||||||||||||||||||||    
T  24454616 atttggcttgacattcatctcatcctttgatctaatctgacttcaaactttcaaatttgatgtctttttcctatgcaccgaattcccatatagcttatag 24454715  T
Q  344 t 344  Q
    |    
T  24454716 t 24454716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 5428508 - 5428560
Alignment:
Q  48 tataggtagccgatgttaccgtttttacagggtgaacaaaattcatgacgaaa 100  Q
    ||||||||||||| |||||||||||||||| |||||||||| ||| |||||||    
T  5428508 tataggtagccgacgttaccgtttttacagagtgaacaaaaatcacgacgaaa 5428560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 19263637 - 19263690
Alignment:
Q  47 gtataggtagccgatgttaccgtttttacagggtgaacaaaattcatgacgaaa 100  Q
    |||||||||||||| |||||| ||||||||  |||||||||| |||||||||||    
T  19263637 gtataggtagccgacgttaccatttttacaatgtgaacaaaaatcatgacgaaa 19263690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 149; Significance: 2e-78; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 143 - 318
Target Start/End: Complemental strand, 53973408 - 53973232
Alignment:
Q  143 tatcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaa-caagggaggccgttggatctc 241  Q
    |||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  53973408 tatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaatcaagggaggccgttggatctc 53973309  T
Q  242 atcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatg 318  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  53973308 atcatttggctaagcctgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatg 53973232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 144 - 318
Target Start/End: Original strand, 31685077 - 31685252
Alignment:
Q  144 atcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaac-aagggaggccgttggatctca 242  Q
    |||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||    
T  31685077 atcatacttatatctaatctttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaataagggaggccgttgaatctca 31685176  T
Q  243 tcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31685177 tcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatg 31685252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 144 - 318
Target Start/End: Original strand, 37982349 - 37982524
Alignment:
Q  144 atcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaa-caagggaggccgttggatctca 242  Q
    ||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  37982349 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctca 37982448  T
Q  243 tcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatg 318  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  37982449 tcatttggctaagcatgcatctcatcctttaatctaatctgagtcaaattttcaaatttgatgtatatttcctatg 37982524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 142 - 318
Target Start/End: Complemental strand, 19882233 - 19882057
Alignment:
Q  142 atatcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaa-caagggaggccgttggatct 240  Q
    |||||||| |||||||||||||||||||||||||| |||||  ||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  19882233 atatcata-ttatatctaatctttgttaacattgctaatgaaattgtaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatct 19882135  T
Q  241 catcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatg 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  19882134 catcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatg 19882057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 144 - 314
Target Start/End: Original strand, 17681767 - 17681938
Alignment:
Q  144 atcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaacaagggaggccgttggatctcat 243  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17681767 atcatacttatatctaatctttgttaacattgttaatgattttgcaaaccctaaacctaaatggttttggctccaaacaaggggggccgttggatctcat 17681866  T
Q  244 catttggctaagcatgcatctcatcctttgatctaatc-tgagtcaaactttcaaatttgatgtatatttcc 314  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||| ||| |||||| ||||||||||||    
T  17681867 catttggttaagcatgcatctcatcctttgatctaatcttgagtcaaatttttaaatttaatgtatatttcc 17681938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 143 - 280
Target Start/End: Complemental strand, 12538757 - 12538620
Alignment:
Q  143 tatcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaacaagggaggccgttggatctca 242  Q
    ||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12538757 tatcatacttatatctaatctttgttaacctttctaatgattttgcaaaccctaaacctaaatggttttggctccaaacaagggaggccgttggatctca 12538658  T
Q  243 tcatttggctaagcatgcatctcatcctttgatctaat 280  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  12538657 tcatttggctaagcatgcatcacatcctttgatctaat 12538620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 142 - 286
Target Start/End: Original strand, 2549935 - 2550079
Alignment:
Q  142 atatcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctcc-aaacaagggaggccgttggatct 240  Q
    |||||||||||||||||||||||  |||||||||| ||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  2549935 atatcatacttatatctaatcttaattaacattgctaatgactttgcaaaccctaaacctaaatgattttggctccaaaacaagggaggccgttggatct 2550034  T
Q  241 catcatttggctaagcatgcatctcatcctttgatctaatctgagt 286  Q
     |||||||||||||||||||||||||||||||||| ||||||||||    
T  2550035 -atcatttggctaagcatgcatctcatcctttgatttaatctgagt 2550079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 143 - 280
Target Start/End: Original strand, 24815914 - 24816052
Alignment:
Q  143 tatcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaa-caagggaggccgttggatctc 241  Q
    |||||||||||||||||||| || |||||||||| ||||| ||||||||||||||||||||||||||||||||||||| | | |  ||||||||||||||    
T  24815914 tatcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctggccgttggatctc 24816013  T
Q  242 atcatttggctaagcatgcatctcatcctttgatctaat 280  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  24816014 atcatttggctcagcatgcatctcatcctttgatctaat 24816052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 144 - 280
Target Start/End: Complemental strand, 24762019 - 24761882
Alignment:
Q  144 atcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctcc-aaacaagggaggccgttggatctca 242  Q
    ||||||||||||||||||| || |||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||| |  | |||||||||||||    
T  24762019 atcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaatgctgaccgttggatctca 24761920  T
Q  243 tcatttggctaagcatgcatctcatcctttgatctaat 280  Q
    |||||||||| |||||||||||||||||||||||||||    
T  24761919 tcatttggctcagcatgcatctcatcctttgatctaat 24761882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 142 - 280
Target Start/End: Complemental strand, 53352884 - 53352745
Alignment:
Q  142 atatcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaa-caagggaggccgttggatct 240  Q
    ||||||||||||||||||||| || |||||||||| ||||| ||||||||| ||||||||||| ||||||||||||||| | | |  | |||||||||||    
T  53352884 atatcatacttatatctaatccttcttaacattgctaatgactttgcaaactctaaacctaaacggttttggctccaaaacgatgctgaccgttggatct 53352785  T
Q  241 catcatttggctaagcatgcatctcatcctttgatctaat 280  Q
    |||||||||||| ||  |||||||||||||||||| ||||    
T  53352784 catcatttggctcagtgtgcatctcatcctttgatttaat 53352745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 143 - 280
Target Start/End: Complemental strand, 53027874 - 53027736
Alignment:
Q  143 tatcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaaca-agggaggccgttggatctc 241  Q
    |||||||||||||||||||| || |||||| ||| ||| | ||| ||||||||||||||||||||||||| |||||||   | |  | ||||||||||||    
T  53027874 tatcatacttatatctaatccttcttaacactgctaataactttacaaaccctaaacctaaatggttttgactccaaaatgatgctgaccgttggatctc 53027775  T
Q  242 atcatttggctaagcatgcatctcatcctttgatctaat 280  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  53027774 atcatttggctcagcatgcatctcatcctttgatctaat 53027736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 7298928 - 7299041
Alignment:
Q  1 gttttaaaatatggtccgttaccaagaaaaagaccgcgnnnnnnnggtataggtagccgatgttaccgtttttacagggtgaacaaaattcatgacgaaa 100  Q
    ||||||||| | ||||||||||| |||||||| |||||       | ||| ||||||||| ||||||| |||||||  |||||||||| |||  ||||||    
T  7298928 gttttaaaaaacggtccgttaccgagaaaaaggccgcgacaaaaag-tatcggtagccgacgttaccgcttttacaaagtgaacaaaaatcacaacgaaa 7299026  T
Q  101 tgtcgttacagctgc 115  Q
     | ||||||||||||    
T  7299027 cggcgttacagctgc 7299041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 172
Target Start/End: Complemental strand, 32015813 - 32015784
Alignment:
Q  143 tatcatacttatatctaatctttgttaaca 172  Q
    ||||||||||||||||||||||||||||||    
T  32015813 tatcatacttatatctaatctttgttaaca 32015784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 145; Significance: 4e-76; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 143 - 318
Target Start/End: Complemental strand, 11756 - 11580
Alignment:
Q  143 tatcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaa-caagggaggccgttggatctc 241  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||    
T  11756 tatcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaactggttttgactccaaaacaagggaggccgttggatctc 11657  T
Q  242 atcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatg 318  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11656 atcatttggttaagcatgcatctcatcctttgatttaatctgagtcaaactttcaaatttgatgtatatttcctatg 11580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 145; Significance: 4e-76; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 151 - 318
Target Start/End: Complemental strand, 33045545 - 33045377
Alignment:
Q  151 ttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaac-aagggaggccgttggatctcatcatttg 249  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  33045545 ttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaataagggaggccgttggatctcatcatttg 33045446  T
Q  250 gctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatg 318  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33045445 gttaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatg 33045377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 142 - 272
Target Start/End: Original strand, 10092510 - 10092641
Alignment:
Q  142 atatcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctcc-aaacaagggaggccgttggatct 240  Q
    ||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  10092510 atatcatacttatatctaatctttgttaacattgttaatgactttgcaaaccctaaatctaaatggttttggctccaaaacaagggaggccgttggatct 10092609  T
Q  241 catcatttggctaagcatgcatctcatccttt 272  Q
    ||||||||||||||||||||||||||| ||||    
T  10092610 catcatttggctaagcatgcatctcattcttt 10092641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 144 - 255
Target Start/End: Original strand, 3065698 - 3065809
Alignment:
Q  144 atcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaacaagggaggccgttggatctcat 243  Q
    |||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3065698 atcatacttatatctaatctttgttaacatggctaatgactttgcaaaccctaaacctaaatggttttggctccaaacaagggagaccgttggatctcat 3065797  T
Q  244 catttggctaag 255  Q
    ||||||||||||    
T  3065798 catttggctaag 3065809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 151 - 284
Target Start/End: Original strand, 8976411 - 8976545
Alignment:
Q  151 ttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctcc-aaacaagggaggccgttggatctcatcatttg 249  Q
    |||||||||||||||||||| ||||| ||||| ||| ||||| |||||||||||||||||||||||| ||| ||||||| |||||||||||||| ||||     
T  8976411 ttatatctaatctttgttaatattgctaatgactttacaaactctaaacctaaatggttttggctccaaaataagggagaccgttggatctcattattta 8976510  T
Q  250 gctaagcatgcatctcatcctttgatctaatctga 284  Q
    ||||| |||||||||||||||||||||||||||||    
T  8976511 gctaaacatgcatctcatcctttgatctaatctga 8976545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 16246702 - 16246780
Alignment:
Q  144 atcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaaca 222  Q
    |||||||||||||||||||||||| |||||||| ||||| |||||||||||||| ||||||||||||||||||||||||    
T  16246702 atcatacttatatctaatctttgtgaacattgctaatgactttgcaaaccctaatcctaaatggttttggctccaaaca 16246780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 30908493 - 30908412
Alignment:
Q  142 atatcatactt-atatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaaca 222  Q
    ||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||    
T  30908493 atatcatactttatatctaatctttgttaacattgctaatgactttgcaaaccctaaatctaaatggttttggctccaaaca 30908412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 4660295 - 4660222
Alignment:
Q  145 tcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaa 219  Q
    |||||||||||| ||||||||||||||||||| ||||| |||||||||||||| |||||| | ||||||||||||    
T  4660295 tcatacttatatataatctttgttaacattgctaatgactttgcaaaccctaaccctaaa-gtttttggctccaa 4660222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 318
Target Start/End: Original strand, 10092641 - 10092673
Alignment:
Q  286 tcaaactttcaaatttgatgtatatttcctatg 318  Q
    |||||||||||||||||||||||||||||||||    
T  10092641 tcaaactttcaaatttgatgtatatttcctatg 10092673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 144 - 318
Target Start/End: Complemental strand, 29863482 - 29863307
Alignment:
Q  144 atcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaa-caagggaggccgttggatctca 242  Q
    |||||||||||||||||||||||||||||||||  |||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  29863482 atcatacttatatctaatctttgttaacattgctcatgactttgcaaaccgtaaacctaaatggttttggctccaaaacaagggaggccgttggatctca 29863383  T
Q  243 tcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatg 318  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29863382 tcatttggctgagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcttatg 29863307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 144 - 205
Target Start/End: Original strand, 12506436 - 12506497
Alignment:
Q  144 atcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaat 205  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||    
T  12506436 atcatacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaat 12506497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 24260237 - 24260294
Alignment:
Q  161 tctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaa 219  Q
    |||||||||||||||| ||||| |||||||||||||| |||||| | ||||||||||||    
T  24260237 tctttgttaacattgctaatgactttgcaaaccctaaccctaaa-gtttttggctccaa 24260294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 28146863 - 28146913
Alignment:
Q  65 accgtttttacagggtgaacaaaattcatgacgaaatgtcgttacagctgc 115  Q
    ||||||||||||| |||||||||| ||| ||| ||| ||||||||||||||    
T  28146863 accgtttttacagagtgaacaaaaatcacgacaaaacgtcgttacagctgc 28146913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 142 - 318
Target Start/End: Original strand, 652 - 829
Alignment:
Q  142 atatcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaac-aagggaggccgttggatct 240  Q
    ||||||||||||||||| ||||||||||||||||| |||||  |||||||||||||||||||||||||||| |||||||  |||||||||||||||||||    
T  652 atatcatacttatatctgatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttgactccaaaataagggaggccgttggatct 751  T
Q  241 catcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctatg 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  752 catcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctatg 829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 144 - 296
Target Start/End: Original strand, 27410 - 27563
Alignment:
Q  144 atcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaacaagggaggccgttggatctcat 243  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27410 atcatacttatatctaatctttgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaacaagggaggccgttggatctcat 27509  T
Q  244 catttggctaagcatgcatctcatcctttgatctaatctga-gtcaaactttca 296  Q
    ||||||||||||||||||||||||||||||||||||| |||  |||||||||||    
T  27510 catttggctaagcatgcatctcatcctttgatctaatttgacttcaaactttca 27563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 50990905 - 50990985
Alignment:
Q  142 atatcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaaaca 222  Q
    ||||| |||||||||||||||||||||||||||||  || | |||||||||||||||||||||||||||||||||||||||    
T  50990905 atatcttacttatatctaatctttgttaacattgctgataactttgcaaaccctaaacctaaatggttttggctccaaaca 50990985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 172
Target Start/End: Original strand, 25223219 - 25223247
Alignment:
Q  144 atcatacttatatctaatctttgttaaca 172  Q
    |||||||||||||||||||||||||||||    
T  25223219 atcatacttatatctaatctttgttaaca 25223247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 14041 - 13980
Alignment:
Q  144 atcatacttatatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaat 205  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||    
T  14041 atcatacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaat 13980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 153 - 219
Target Start/End: Complemental strand, 7585 - 7520
Alignment:
Q  153 atatctaatctttgttaacattgcaaatgattttgcaaaccctaaacctaaatggttttggctccaa 219  Q
    |||| ||||||||||||||||||| ||||| |||||||||||||| |||||| | ||||||||||||    
T  7585 atatataatctttgttaacattgctaatgactttgcaaaccctaaccctaaa-gtttttggctccaa 7520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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