View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12779_low_12 (Length: 421)
Name: NF12779_low_12
Description: NF12779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12779_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 403
Target Start/End: Complemental strand, 1021489 - 1021095
Alignment:
| Q |
13 |
actgtgttgatgaaaacagcgggaatgtcgtcggagacggcgagaggttcaccggcggcgaaagtggagagtgcggaaccggtgaggcgaagagagttac |
112 |
Q |
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| T |
1021489 |
actgtgttgatgaaaacagcgggaatgtcgtcggagacggagagaggttcaccggcggcgaaagtggagagtgcggaaccggtgaggcgaagagagttac |
1021390 |
T |
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| Q |
113 |
agtaatcagaatgagccgctgcgaggtagtggcgagcgtaaagtgcttccttcatgagacggcggcgttctttgcaccgtcgtaccgtttcttcgttgtc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1021389 |
agtaatcagaatgagccgctgcgaggtagtggcgagcgtaaagtgcttccttcatgagacggcggcgttctttgcaccgtcgtaccgtttcttcgttgtc |
1021290 |
T |
|
| Q |
213 |
gagtttagacaccgtacaacccattgtttcaggtggtatatatataccgta-----------tatttgaacgtgtgtatgcgtatattaaacaaaaacaa |
301 |
Q |
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| T |
1021289 |
gagtttagacacagtgcaacccattgtttcaggtggtatatatataccgtatattatacacgtatttgaacgtctgtatgcgtatattaaacaaaaacaa |
1021190 |
T |
|
| Q |
302 |
atgttgaagaaggttttgaagggaaac-aagaacttgaaaaac-aagtgcaagtgttagttaatctgaagtgctatgatatctaggttggttaggtttat |
399 |
Q |
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| T |
1021189 |
atgttgaagaaggttttgaagggaaacaaagaacttgaaaaacaaagtgcaagt----gttaatctgaagtgc-----tatctaggttggttaggtttac |
1021099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 13 - 126
Target Start/End: Complemental strand, 4970850 - 4970737
Alignment:
| Q |
13 |
actgtgttgatgaaaacagcgggaatgtcgtcggagacggcgagaggttcaccggcggcgaaagtggagagtgcggaaccggtgaggcgaagagagttac |
112 |
Q |
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|||||||||| |||||| ||||||||||||||| |||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4970850 |
actgtgttgacgaaaacggcgggaatgtcgtcgaagacggcgagaggttcactggcagcgaaggtggagagtgcggaaccggtgaggcgaagagagttat |
4970751 |
T |
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| Q |
113 |
agtaatcagaatga |
126 |
Q |
| |
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|||||||||||||| |
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| T |
4970750 |
agtaatcagaatga |
4970737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 9e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 6344978 - 6345091
Alignment:
| Q |
13 |
actgtgttgatgaaaacagcgggaatgtcgtcggagacggcgagaggttcaccggcggcgaaagtggagagtgcggaaccggtgaggcgaagagagttac |
112 |
Q |
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|||||||||| |||||| ||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6344978 |
actgtgttgacgaaaacggcgggaatgtcgtcggagacgacgagaggttcactggcggcgaaggtggagagtgcggaaccggtgaggcgaagagagttac |
6345077 |
T |
|
| Q |
113 |
agtaatcagaatga |
126 |
Q |
| |
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|||||||||||||| |
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| T |
6345078 |
agtaatcagaatga |
6345091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 31344534 - 31344725
Alignment:
| Q |
18 |
gttgatgaaaacagcgggaatgtcgtcggagacggcgagaggttcaccggcggcgaaagtggagagtgcggaaccggtgaggcgaagagagttacagtaa |
117 |
Q |
| |
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|||||||||||| |||||| ||| || || |||| |||||||||||||| ||||||||||||||| |||| |||||||| || || || ||||| |
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| T |
31344534 |
gttgatgaaaacggcgggagtgttatcagaaacggagagaggttcaccggaggcgaaagtggagagggcggtgccggtgagacggagggaacggcagtag |
31344633 |
T |
|
| Q |
118 |
tcagaatgagccgctgcgaggtagtggcgagcgtaaagtgcttccttcatgagacggcggcgttctttgcaccgtcgtaccgtttcttcgtt |
209 |
Q |
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|| || ||||| || ||||||| || ||||| || | ||||| ||||| |||||||| || |||||||||||||| || || |||||||| |
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| T |
31344634 |
tcggagtgagcagcggcgaggtgatgacgagcatagacagcttctttcataagacggcgacggtctttgcaccgtcgcactgtatcttcgtt |
31344725 |
T |
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