View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12779_low_13 (Length: 404)
Name: NF12779_low_13
Description: NF12779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12779_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 24 - 397
Target Start/End: Original strand, 34143919 - 34144292
Alignment:
| Q |
24 |
ccatctaagaatatttaataactagatgcaggccatgcattgcacgggtgtagtataattaaccaaaacttaaatcttttgtatacttataaaaattcaa |
123 |
Q |
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| T |
34143919 |
ccatctaagaatatttaataactagatgcaggccaagcattgcacgggtgtagtataattaaccaaaacttaaatcttttatatacttataaaaattcaa |
34144018 |
T |
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| Q |
124 |
cagaataaagaatagccatggaatttttgtctgtattgaatagtaccctctagcgttattgttttaaagaacccaatacaaagtattaatataaaaacat |
223 |
Q |
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| T |
34144019 |
cagaataaagaatagccatggaatttttgtctgtattgaatagtaccctctagcgttattgttttaaagaacccaatacaaagtattaatataaaaacat |
34144118 |
T |
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| Q |
224 |
tgctttgttgttttgattatctatatatacataaacaaatgaactttgctttataagcagccattctctgaaaaaacatgccttagacaaatccctgctt |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34144119 |
tgctttgttgttttgattatctatatatacataaacaaatgaactttgctttataagcagccattctctgaaaaaacatgccttagacaaatccctgctt |
34144218 |
T |
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| Q |
324 |
gaaattgtacgagtcattcactaaggtttgactcttatcattggaaactccaagatctgtcatgtatcatctca |
397 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34144219 |
gaaattgtacgagtctttcactaaggtttgactcttatcattggaaactccaagatctgtcatgtatcatctca |
34144292 |
T |
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