View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12779_low_14 (Length: 383)

Name: NF12779_low_14
Description: NF12779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12779_low_14
NF12779_low_14
[»] chr7 (2 HSPs)
chr7 (4-379)||(33274034-33274409)
chr7 (16-176)||(3160216-3160376)
[»] chr6 (3 HSPs)
chr6 (11-249)||(10029918-10030156)
chr6 (16-146)||(4038684-4038814)
chr6 (84-148)||(10554660-10554724)
[»] chr8 (2 HSPs)
chr8 (20-146)||(12508608-12508734)
chr8 (13-146)||(35665872-35666005)
[»] chr4 (5 HSPs)
chr4 (97-143)||(2428679-2428725)
chr4 (31-147)||(32072592-32072708)
chr4 (31-69)||(46024060-46024098)
chr4 (31-69)||(46265269-46265307)
chr4 (89-146)||(47101350-47101407)
[»] chr2 (2 HSPs)
chr2 (100-138)||(15403650-15403688)
chr2 (97-143)||(44648686-44648732)
[»] chr3 (1 HSPs)
chr3 (97-146)||(43490075-43490124)


Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 4 - 379
Target Start/End: Complemental strand, 33274409 - 33274034
Alignment:
Q  4 aacacaaacaagtttgttggtgttagacaaaggccatcagggagatgggtagctgagatcaaagacacaactcagaagataagaatgtggcttggaacat 103  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33274409 aacacaaacaagtttgttggtgttaggcaaaggccatcagggagatgggtagctgagatcaaagacacaactcagaagataagaatgtggcttggaacat 33274310  T
Q  104 ttgagacagctgaggaagcagctagagcttatgatgaagctgcatgccttcttcgaggttcgaacactcgaaccaacttcatcactcatgtctcattgga 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33274309 ttgagacagctgaggaagcagctagagcttatgatgaagctgcatgccttcttcgaggttcgaacactcgaaccaacttcatcactcatgtctcattgga 33274210  T
Q  204 ttctcctcttgcttccaggataagaaatcttcttaacaacagaaaaggcgacaaaaaacaggaagatggcgctgttgcttctgctccaagtaacagcaaa 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33274209 ttctcctcttgcttccaggataagaaatcttcttaacaacagaaaaggcgacaaaaaacaggaagatggtgctgttgcttctgctccaagtaacagcaaa 33274110  T
Q  304 actaccattagtaatactagtacaattacaagcaatgatgataacaaggagagcactctttcgacctatgctactc 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33274109 actaccattagtaatactagtacaattacaagcaatgatgataacaaggagagcactctttcgacctgtgctactc 33274034  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 3160216 - 3160376
Alignment:
Q  16 tttgttggtgttagacaaaggccatcagggagatgggtagctgagatcaaagacacaactcagaagataagaatgtggcttggaacatttgagacagctg 115  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| || | ||||||||||||| | ||| | ||||| ||||| |||||||    
T  3160216 tttgttggtgtgagacaaaggccatcaggaagatgggtagctgagataaaagataccattcagaagataagagtttggttaggaacttttgatacagctg 3160315  T
Q  116 aggaagcagctagagcttatgatgaagctgcatgccttcttcgaggttcgaacactcgaac 176  Q
    | ||||| || ||||| |||||||||||||||||  | ||||| ||||| |||||| ||||    
T  3160316 aagaagctgcaagagcctatgatgaagctgcatgtatacttcgcggttccaacactagaac 3160376  T

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Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 10029918 - 10030156
Alignment:
Q  11 acaagtttgttggtgttagacaaaggccatcagggagatgggtagctgagatcaaagacacaactcagaagataagaatgtggcttggaacatttgagac 110  Q
    ||||||||||||| || |||||||| |||||||| ||||  || |||||||| || |||||||| || || |||||||||||||||||||||||||| ||    
T  10029918 acaagtttgttggggtgagacaaagaccatcaggtagatatgttgctgagataaaggacacaacacaaaacataagaatgtggcttggaacatttgaaac 10030017  T
Q  111 agctgaggaagcagctagagcttatgatgaagctgcatgccttcttcgaggttcgaacactcgaaccaacttcatcactcatgtctcattggattctcct 210  Q
    ||||||||||||||| ||||||||||||||||| ||    |||||||| ||||| || ||||| ||||||||| |||| ||||| || |  ||||| |||    
T  10030018 agctgaggaagcagcaagagcttatgatgaagccgcgacacttcttcgcggttccaaaactcgtaccaacttcgtcacacatgtttcttatgattcccct 10030117  T
Q  211 cttgcttccaggataagaaatcttcttaacaacagaaaa 249  Q
    || |||||  ||||  || ||||||| |||||| |||||    
T  10030118 ctcgcttctcggattcgacatcttctcaacaaccgaaaa 10030156  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 4038684 - 4038814
Alignment:
Q  16 tttgttggtgttagacaaaggccatcagggagatgggtagctgagatcaaagacacaactcagaagataagaatgtggcttggaacatttgagacagctg 115  Q
    |||||||| ||| ||||||||||||| || |||||||| |||||||| ||||| || | ||| ||||||||| | ||| | ||||| ||||| |||||||    
T  4038684 tttgttggcgttcgacaaaggccatcgggtagatgggttgctgagattaaagataccattcaaaagataagagtttggttaggaacttttgatacagctg 4038783  T
Q  116 aggaagcagctagagcttatgatgaagctgc 146  Q
    | ||||| ||||||||||||||||| |||||    
T  4038784 aagaagctgctagagcttatgatgaggctgc 4038814  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 10554660 - 10554724
Alignment:
Q  84 aagaatgtggcttggaacatttgagacagctgaggaagcagctagagcttatgatgaagctgcat 148  Q
    |||| |||||||||| || ||||| |||||||| |  |||||||  |||||||||||||||||||    
T  10554660 aagagtgtggcttggcacctttgaaacagctgaagctgcagctactgcttatgatgaagctgcat 10554724  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 12508734 - 12508608
Alignment:
Q  20 ttggtgttagacaaaggccatcagggagatgggtagctgagatcaaagacacaactcagaagataagaatgtggcttggaacatttgagacagctgagga 119  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||| || ||||  |  ||||| | ||||||||||| | ||| ||| | || ||    
T  12508734 ttggtgtgagacaaaggccatcaggtagatgggtagctgagatcaaagactcatctcaacatgtaagattatggcttggaacctatgacacaccagaaga 12508635  T
Q  120 agcagctagagcttatgatgaagctgc 146  Q
    ||| ||| ||||||| || ||||||||    
T  12508634 agctgctcgagcttacgacgaagctgc 12508608  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 146
Target Start/End: Original strand, 35665872 - 35666005
Alignment:
Q  13 aagtttgttggtgttagacaaaggccatcagggagatgggtagctgagatcaaagacacaactcagaagataagaatgtggcttggaacatttgagacag 112  Q
    ||||||||||| || ||||||||  | ||||| | ||||| ||| ||||| ||||||||| |  |||| || || ||||||||||| || | | | || |    
T  35665872 aagtttgttggagtgagacaaagagcttcaggaaaatgggcagcagagataaaagacacatcaaagaacattaggatgtggcttggtacctataaaactg 35665971  T
Q  113 ctgaggaagcagctagagcttatgatgaagctgc 146  Q
    |||||||||| ||| ||||||| |||||||||||    
T  35665972 ctgaggaagctgctcgagcttacgatgaagctgc 35666005  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 2428725 - 2428679
Alignment:
Q  97 ggaacatttgagacagctgaggaagcagctagagcttatgatgaagc 143  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||    
T  2428725 ggaacatttgagacagctgaagaagcagctagagcatatgatgaagc 2428679  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 31 - 147
Target Start/End: Original strand, 32072592 - 32072708
Alignment:
Q  31 caaaggccatcagggagatgggtagctgagatcaaagacacaactcagaagataagaatgtggcttggaacatttgagacagctgaggaagcagctagag 130  Q
    ||||| || |||||||||||||| ||||||||||||||||| |  ||||| |||||| ||||| | || || | ||| || | ||| || || |||||||    
T  32072592 caaagaccttcagggagatgggtggctgagatcaaagacaccatacagaacataagattgtggttggggacctatgacactggtgaagaggctgctagag 32072691  T
Q  131 cttatgatgaagctgca 147  Q
    |||||||||| ||||||    
T  32072692 cttatgatgaggctgca 32072708  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 46024060 - 46024098
Alignment:
Q  31 caaaggccatcagggagatgggtagctgagatcaaagac 69  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  46024060 caaaggccatcaggaagatggatagctgagatcaaagac 46024098  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 46265307 - 46265269
Alignment:
Q  31 caaaggccatcagggagatgggtagctgagatcaaagac 69  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  46265307 caaaggccatcaggaagatggatagctgagatcaaagac 46265269  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 146
Target Start/End: Complemental strand, 47101407 - 47101350
Alignment:
Q  89 tgtggcttggaacatttgagacagctgaggaagcagctagagcttatgatgaagctgc 146  Q
    ||||||| ||||||||||| ||||| || |||||||| ||||| |||||| |||||||    
T  47101407 tgtggctaggaacatttgaaacagcagaagaagcagcaagagcatatgatcaagctgc 47101350  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 138
Target Start/End: Original strand, 15403650 - 15403688
Alignment:
Q  100 acatttgagacagctgaggaagcagctagagcttatgat 138  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  15403650 acatttgacacagctgaagaagcagctagagcttatgat 15403688  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 44648732 - 44648686
Alignment:
Q  97 ggaacatttgagacagctgaggaagcagctagagcttatgatgaagc 143  Q
    ||||||||||| |||||||| |||||||||| ||| |||||||||||    
T  44648732 ggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagc 44648686  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 43490124 - 43490075
Alignment:
Q  97 ggaacatttgagacagctgaggaagcagctagagcttatgatgaagctgc 146  Q
    ||||||||||| |||||||| | ||| |||||||| ||||||||||||||    
T  43490124 ggaacatttgaaacagctgaagcagctgctagagcatatgatgaagctgc 43490075  T

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