View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12779_low_16 (Length: 372)
Name: NF12779_low_16
Description: NF12779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12779_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 97 - 308
Target Start/End: Complemental strand, 1158377 - 1158162
Alignment:
| Q |
97 |
gaaggttaatactacctagatgatttgttttcttctctataacctaattaccaaaaacaacatttatcaat------gatgggtgagcaaccacattagt |
190 |
Q |
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| T |
1158377 |
gaaggttaagcccacctagatgatttgttttcttctctataacctaattaccaaaaacaacatttattaatattaatgatgaaagagcaacctcgttaac |
1158278 |
T |
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| Q |
191 |
ttctctcttgaaaaactcaacatgagagttgttacaactaaacttaactagagattaacatttcctagtatgataaaaccaaatttagaaacattattat |
290 |
Q |
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| T |
1158277 |
ttctctctttgaaaactcaacatgagagttgttacaactaaacttaactagagattgacatttccta--atgataaaaccaaattcagaaacattattat |
1158180 |
T |
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| Q |
291 |
tatttattggaggcatca |
308 |
Q |
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| T |
1158179 |
tatttattggaggcatca |
1158162 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 35425453 - 35425406
Alignment:
| Q |
183 |
acattagtttctctcttgaaaaactcaacatgagagttgttacaacta |
230 |
Q |
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| T |
35425453 |
acattagcttctctcttgaaaaattcaacatgagagtttttacaacta |
35425406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 6955084 - 6955137
Alignment:
| Q |
174 |
tgagcaaccacattagtttctctcttgaaaaactcaacatgagagttgttacaa |
227 |
Q |
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| T |
6955084 |
tgagcaaccatattagtctctctcttagaaaactcgacataagagttgttacaa |
6955137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 245
Target Start/End: Original strand, 51153739 - 51153783
Alignment:
| Q |
202 |
aaaactcaacatgagagttgttacaactaaact-taactagagat |
245 |
Q |
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| T |
51153739 |
aaaactcaacattagagttcttacaactaaactctaactagagat |
51153783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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