View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12779_low_17 (Length: 349)
Name: NF12779_low_17
Description: NF12779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12779_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 341
Target Start/End: Complemental strand, 5126573 - 5126249
Alignment:
| Q |
16 |
caatttgcctactcacaggaaaattcatcataccaacggtaattttctcatctttattttggtctaacataaaagatctatgaatttcagtagaaatagt |
115 |
Q |
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| T |
5126573 |
caatttgcctactcacaggaaaattcatcataccaacggtaattttctcatctttattttggtctaagataaaagatctacgaatttcagtagaaatagt |
5126474 |
T |
|
| Q |
116 |
gttcgaaagtgtgttgttatcctctattatcaagtcaataaaagaccatgtgttagaaatatagtttcctatagtatcttccaataactaatnnnnnnnn |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5126473 |
gttcgaaagtgtgttgttatcctctattatcaagtcaataaaagaccatgtgttagaaatatagtttcctatagtatcttccaataactaat-aaaaaaa |
5126375 |
T |
|
| Q |
216 |
taagaaaatgtaacattatataatataaagtcataatgattctaagttcttacatcaaattgttgtggctaatttgatgcagctatcaaacattgcaagt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5126374 |
taagaaaatgtaacattatataatataaagtcataatgattctaagttcttacatcaaattgttgtggctaatttgatgcagctatcaaacattgcaagt |
5126275 |
T |
|
| Q |
316 |
gcactctttcttggacttttcatctc |
341 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
5126274 |
gcactctttcttggacttttcatctc |
5126249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 35924500 - 35924458
Alignment:
| Q |
16 |
caatttgcctactcacaggaaaattcatcataccaacggtaat |
58 |
Q |
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|||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
35924500 |
caatttgccttctcacaggaaaatttatcataccaacggtaat |
35924458 |
T |
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