View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12779_low_18 (Length: 335)
Name: NF12779_low_18
Description: NF12779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12779_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 20 - 317
Target Start/End: Original strand, 52582278 - 52582583
Alignment:
| Q |
20 |
gtctggttactaatctaaagagcatcataagtcatgaatttcaaaaactgtaaattcacctgaagacacattggatcattttgtcatgttacataataat |
119 |
Q |
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| T |
52582278 |
gtctggttactaatctaaagagcatcataagtcatgaatttcaaaaactgtaaattcacctgaagacacattggatcattttgtcatgttacataataat |
52582377 |
T |
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| Q |
120 |
attctctcctgattttgaaatttctcaaacaaaattctttctatcttcatag--------attcacttctaagtcctaatcctccacagtgacatcttcc |
211 |
Q |
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| T |
52582378 |
attctctcctgattttgaaatttctcaaacaaaattctttttatcttcataggttatataattcacttctaagtcctaatcctccacagtgctatcttcc |
52582477 |
T |
|
| Q |
212 |
cttgacataaaattgttagctggtgggttggagtcttccgaagagtctccaaactcttctttgtacatttcttctatcattggtttccatagccgtaccc |
311 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52582478 |
cttgacataaaattgttagctggcgggttggagtcttccgaagagtctccaaactcttctttgtacatttcttctatcattggtttccatagccgtaccc |
52582577 |
T |
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| Q |
312 |
ttgcat |
317 |
Q |
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|||||| |
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| T |
52582578 |
ttgcat |
52582583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 317
Target Start/End: Original strand, 7301660 - 7301717
Alignment:
| Q |
260 |
ccaaactcttctttgtacatttcttctatcattggtttccatagccgtacccttgcat |
317 |
Q |
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|||||||||||||||||||||||||| | |||||||||||| || || ||||| |||| |
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| T |
7301660 |
ccaaactcttctttgtacatttcttcgaccattggtttccaaagacgcaccctcgcat |
7301717 |
T |
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