View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12779_low_19 (Length: 331)
Name: NF12779_low_19
Description: NF12779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12779_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 2434166 - 2434477
Alignment:
| Q |
1 |
atcagtacaaagtatatatgggaacaattcatactatgtgatacaattgcaagttttctgtaggcatcacttgttttgttttccattaataattcattaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2434166 |
atcagtacaaagtatatatgggaacaattcatactatgtgatacaattgcaagttttctgtaggcatcacttgttttgttttccattaataattcattaa |
2434265 |
T |
|
| Q |
101 |
tccagttttgtttgtctttaaaatataaatctgcaaattacacaccgtttgacaagtcacgagaattattatttaactttagcaatcatagcaactaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2434266 |
tccagttttgtttgtctttaaaatataaatctgcaaattacacaccgtttgacaagtcacgagaattattatttaactttagcaatcatagcaactaaca |
2434365 |
T |
|
| Q |
201 |
acaactcaaataagattgaacctttcagcatttgtacattaagaactttttcgtaagtacaatttatcgtgcattgctactttatttaggatactgtaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2434366 |
acaactcaaataagattgaacctttcagcatttgtacattaagaactttttcgtaagtacaatttatcgtgcattgctactttatttaggatactgtaag |
2434465 |
T |
|
| Q |
301 |
gaataaacaatc |
312 |
Q |
| |
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|||||||||||| |
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| T |
2434466 |
gaataaacaatc |
2434477 |
T |
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