View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12779_low_21 (Length: 316)
Name: NF12779_low_21
Description: NF12779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12779_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 307
Target Start/End: Original strand, 42518272 - 42518562
Alignment:
| Q |
17 |
aatataatgtacggctaagatttatgttaggcacctgcagtatcaaagacaaataaataaagtgtccataacaaataacgtggtaataatttaactgcta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42518272 |
aatataatgtacggctaagatttatgttaggcacctgcagtatcaaagacaaataaataaagtgtccataacaaataacgtggtaataatttaactgcta |
42518371 |
T |
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| Q |
117 |
aaaaagttgtttctgttctgtcttcgtgaatcttcacgttgtgaatttacttcagacatagagagagacagtggaaaagcttaaagctgctgtataaaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42518372 |
aaaaagttgtttctgttctgtcttcgtgaatcttcacgttgtgaatttacttcagacatagagagagacagtggaaaagcttaaagctgctgtataaaaa |
42518471 |
T |
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| Q |
217 |
ccatcagtgtctactagannnnnnnnnnnnnnnnnncttgtgagcgagaaagtaaagtacgtgtacctgcttgagttgtttcttttctctg |
307 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42518472 |
ccatcagtgtctactagagagtgtgtgtgtgtgtgtcttgtgagcgagaaagtaaagtacgtgtacctgcttgagttgtttcttttctctg |
42518562 |
T |
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