View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12779_low_22 (Length: 308)

Name: NF12779_low_22
Description: NF12779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12779_low_22
NF12779_low_22
[»] chr6 (1 HSPs)
chr6 (1-293)||(31114060-31114352)


Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 31114060 - 31114352
Alignment:
Q  1 gaaaatatggtaaggttcaagaaaaaggagaaataatacagtagcgcgcttgtgtgtacatgtaaggcttcactcgttgggtttattatgaacatcatcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31114060 gaaaatatggtaaggttcaagaaaaaggagaaataatacagtagcgcgcttgtgtgtacatgtaaggcttcactcgttgggtttattatgaacatcatcc 31114159  T
Q  101 aaattttgatttatgtaagcttgtgttacattaaacaaatttcatgcattattgaatacatacgacgctgatagaaaacaacaaaaattgagagaaaata 200  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31114160 aaattttgattaatgtaagcttgtgttacattaaacaaatttcatgcattattgaatacatacgacgctgatagaaaacaacaaaaattgggagaaaata 31114259  T
Q  201 tatcgtgtaggaggaacttcgcaaagctctatcattcttcttccacttcctcaagttcaaacaaacaccactgacacggtggccgctgacagt 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  31114260 tatcgtgtaggaggaacttcgcaaagctctatcattcttcttccacttcctcaagttcaaacaaacgccactgacacagtggccgctgacagt 31114352  T

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