View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12779_low_23 (Length: 296)
Name: NF12779_low_23
Description: NF12779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12779_low_23 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 39125967 - 39125691
Alignment:
| Q |
1 |
agctctcaaccacactaatctaaatctttcacatcaactcattatggtcaatcttataaaacttcaagtaaaagctataagtatccttcgtctaattctc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39125967 |
agctctcaaccacactaatctaa-tctttcacatcaactcattatggtcaatcttataaaacttcaagtaaaagctataagtatccttcgtctaattctc |
39125869 |
T |
|
| Q |
101 |
aacttacaagcattgtatatcgcttttgaatcttacgaccatgtccttaagcttctcatgccatacatactatttacattaaactttgtcataactgacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39125868 |
aacttacaagcattgtatatcgcttttgaatcttacgaccatgtccttaagcttctcatgccatacatactatttacattaaactttgtcataactgacc |
39125769 |
T |
|
| Q |
201 |
gtaaaagattcaataaaatcaatgggataaggatgagatcagttaactctgaaacttaggtgacgcataagtaaacac |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
39125768 |
gtaaaagattcaataaaatcaatgggataaggatgagatcggttaactctgaaacttaggtgacacataagtaaacac |
39125691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University